jgi.p|Nanoce1779_2|591164, mRNA_5027 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591164
Unique NamemRNA_5027
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1044
Alignment locationscaffold_12:274418..275573 +

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Properties
Property NameValue
TranscriptId591250
TrackFilteredModels2
ProteinId591164
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:274418..275573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591164gene_5027Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591164mRNA_5027-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5027CDS_5027Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5027 ID=mRNA_5027|Name=jgi.p|Nanoce1779_2|591164|organism=Nannochloropsis oceanica|type=mRNA|length=1044bp
GCAGTTGTCCCTCTCTTCGTCTTCTACTCCGTTGCCTTCTGCTGCCTCTA
CTTCTGCTGCCTCTAATTCGCTCTCTCCTGCTGCTGCTCCTGCTGCTGTG
TCAGGCAAGAAGAGCAAGAAAGAAAAAGGTAGCAAGGAGAAAGATGCCGC
TGAACTGTCAGCAACATCATCGCTACTATCAAAGTCTTCGCCAAGACAAA
AAAATATTCCCACTTCGTGGGAAGAAGCGTTGCTGAAGCCTGAGCTCCAA
GTGGTCTTCATCCAACATAAGAACGCCAACTCGGAACAGCTCTCGAATGC
GAGGCGAGAAGCATTGGGTCTCCCCCCTGTGCAGATCGAATGGCTTGACG
ACAGCGTCCACACAGCTCTCTCCACTTCCTTTTATTACTTGGAAGACGAA
GACTCCCATATTCCACACTTTCCGCGTGTGGCCGTCGGTGGAACCTTCGA
TCGCCTGCATAATGGACATAAAAAGCTATTAACACTCGCGGCGTGTGTCT
GCCAAACGGAACTTACCATCGGGATCACCAGCACGGAGATGCTGGCCAAC
AAAAAAAACGCGGCGCAAATCGAGCCCTTGGCCGATAGGATAGAAGCAGT
ACGAGCATTCCTTCACTCGGTGTTTCCCAACCTGCCTCTGGACATCGTGG
TATTGAAAGACCCGTTTGGCCCTCCTGTGCATAATGAGAAATTCGATGCC
ATTGTAGTGAGTTCAGAAACGATTGCAGGCGCGGCCAAAATCAATGAATT
ACGGGTGGAGAAAGGATTTAAGCCGTTGGTAGTAGTGGTAACAAGGAGGA
CGGTGAGTAGTCTTTTGTCTTCGACGTTTATTCGGAACAATCTGCCGCCG
AGACGGAAGCAGGGGAAGTAGGAGACTGGGGATGAGAGGAGCTTTGTGTT
TGTATGAAAAAAAAGGCGGGGAATGTGTGTGCTGCAACAAGATGATGTAT
GATAACCTTCAAAAGAAAGCAAATAAAGGGAAAATAAGCCTCTATTTTTA
TTTCTCGCTAGGTGCACATATTTTTTAGCATTAGCAGCAGTGCG
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protein sequence of jgi.p|Nanoce1779_2|591164

>mRNA_5027-protein ID=mRNA_5027-protein|Name=jgi.p|Nanoce1779_2|591164|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MLANKKNAAQIEPLADRIEAVRAFLHSVFPNLPLDIVVLKDPFGPPVHNE
KFDAIVVSSETIAGAAKINELRVEKGFKPLVVVVTRRTVSSLLSSTFIRN
NLPPRRKQGK*
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mRNA from alignment at scaffold_12:274418..275573+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5027 ID=mRNA_5027|Name=jgi.p|Nanoce1779_2|591164|organism=Nannochloropsis oceanica|type=mRNA|length=1156bp|location=Sequence derived from alignment at scaffold_12:274418..275573+ (Nannochloropsis oceanica)
GCAGTTGTCCCTCTCTTCGTCTTCTACTCCGTTGCCTTCTGCTGCCTCTA
CTTCTGCTGCCTCTAATTCGCTCTCTCCTGCTGCTGCTCCTGCTGCTGTG
TCAGGCAAGAAGAGCAAGAAAGAAAAAGGTAGCAAGGAGAAAGATGCCGC
TGAACTGTCAGCAACATCATCGCTACTATCAAAGTCTTCGCCAAGACAAA
AAAATATTCCCACTTCGTGGGAAGAAGCGTTGCTGAAGCCTGAGCTCCAA
GTGGTCTTCATCCAACATAAGAACGCCAACTCGGAACAGCTCTCGAATGC
GAGGCGAGAAGCATTGGTGAGTAGGAGTCGAAAGGAATGAAAGACGAAAG
GGGAAAGAATGCTGATTTTTATACCATGTCATTGTATGATTACACATATG
TTCACTCTTTCCTTCCTCATTCCCTCAGGGTCTCCCCCCTGTGCAGATCG
AATGGCTTGACGACAGCGTCCACACAGCTCTCTCCACTTCCTTTTATTAC
TTGGAAGACGAAGACTCCCATATTCCACACTTTCCGCGTGTGGCCGTCGG
TGGAACCTTCGATCGCCTGCATAATGGACATAAAAAGCTATTAACACTCG
CGGCGTGTGTCTGCCAAACGGAACTTACCATCGGGATCACCAGCACGGAG
ATGCTGGCCAACAAAAAAAACGCGGCGCAAATCGAGCCCTTGGCCGATAG
GATAGAAGCAGTACGAGCATTCCTTCACTCGGTGTTTCCCAACCTGCCTC
TGGACATCGTGGTATTGAAAGACCCGTTTGGCCCTCCTGTGCATAATGAG
AAATTCGATGCCATTGTAGTGAGTTCAGAAACGATTGCAGGCGCGGCCAA
AATCAATGAATTACGGGTGGAGAAAGGATTTAAGCCGTTGGTAGTAGTGG
TAACAAGGAGGACGGTGAGTAGTCTTTTGTCTTCGACGTTTATTCGGAAC
AATCTGCCGCCGAGACGGAAGCAGGGGAAGTAGGAGACTGGGGATGAGAG
GAGCTTTGTGTTTGTATGAAAAAAAAGGCGGGGAATGTGTGTGCTGCAAC
AAGATGATGTATGATAACCTTCAAAAGAAAGCAAATAAAGGGAAAATAAG
CCTCTATTTTTATTTCTCGCTAGGTGCACATATTTTTTAGCATTAGCAGC
AGTGCG
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Coding sequence (CDS) from alignment at scaffold_12:274418..275573+

>mRNA_5027 ID=mRNA_5027|Name=jgi.p|Nanoce1779_2|591164|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_12:274418..275573+ (Nannochloropsis oceanica)
ATGCTGGCCAACAAAAAAAACGCGGCGCAAATCGAGCCCTTGGCCGATAG
GATAGAAGCAGTACGAGCATTCCTTCACTCGGTGTTTCCCAACCTGCCTC
TGGACATCGTGGTATTGAAAGACCCGTTTGGCCCTCCTGTGCATAATGAG
AAATTCGATGCCATTGTAGTGAGTTCAGAAACGATTGCAGGCGCGGCCAA
AATCAATGAATTACGGGTGGAGAAAGGATTTAAGCCGTTGGTAGTAGTGG
TAACAAGGAGGACGGTGAGTAGTCTTTTGTCTTCGACGTTTATTCGGAAC
AATCTGCCGCCGAGACGGAAGCAGGGGAAGTAG
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Synonyms
Publications