|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 591243 |
| Track | FilteredModels2 |
| ProteinId | 591157 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:271457..273393 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5026 ID=mRNA_5026|Name=jgi.p|Nanoce1779_2|591157|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp
GTTGTATTTCCCGAATTCCATGACACACAACACGCCACTTCGCCTCGTCC
ATGACCTCATGCCCTTTGCATAGCCGATTGGAGTACTCTAGTTTTCTCTG
AAAACCAACTTTACATTCGTTTCTACCGCTTTATTCACCTTTCCTTCTCC
TCCAAGACCACCACAGGCGCGCAACGACTTCTAAGAGGCCCAGGGACAGG
AAATCGGCACGTCAGGGAGACGCGACCGCAAGCAGACAACACCAATACCA
TGCATCGCTTGCAAGACCTCTTCCGCAATCTTCAAGGCGGAGGCCAAGTG
CCCACACCCGACGGGCCTGTTGTGGACACGTCCGAAAAGGTGCATATCAG
CTCATTGGCGTTGCTCAAGATGCTTAAGCACGGGCGCGCAGGGGTGCCAA
TGGAGGTCATGGGCTTGATGCTCGGTAACTTCGTTGACGACTACACTGTG
AATTGCATCGATGTATTTGCCATGCCGCAGTCGGGGACAAGCGTGACGGT
GGAGGCAGTGGACCCAGTGTTTCAGCATAAGATGTTGGAGATGCTCAAGC
AGACGGGACGGCCTGAGATGGTTGTCGGCTGGTACCACAGTCACCCCGGA
TTTGGATGCTGGCTCTCAGGTGTGGACGTCAACACGCAGCAGAGCTTCGA
GCAATTGAACCAGCGTGCCGTGGCCGTGGTGGTCGACCCGATCCAGTCCG
TTAAGGGCAAGGTAGTCATCGACGCTTTCAGAACCATCAACCCTCAACTC
ATGTTGCTCAATCAAGAACCGAGGCAGACCACTTCCAACGTCGGTCACCT
GAACAAGCCCAGTATCCAGGCTTTGATCCACGGGCTGAATCGGCATTACT
ACTCCATTGTGATCGACTACCGCAAGAATGAGCTGGAGGAGCAGATGCTT
ATGAACCTGCATAAAAAGAGCTGGACGTACGGTTTGAAGCTGCAGCGGTT
TGAGGACCACCACAAGACTAACGAGATGACCGTCGAGGCCATGCTTAAGC
TGAGCAAGGACTACAACGAACGGGTGCAAGAGGAGGAGGGAAAGACGGCG
GAAGAGCGCATCGTTGCCAACGTTGGGAAGATCGACCCCAAGCGCCACTT
GGAGAGTGACGTTGCCGCATTGATGGCCAGCAATATCGTCCAATGCCTCG
GTGCCATGCTCGATACAATCGTCTTTTGAGCAGGAGGGAAGGAAGAAGGG back to topprotein sequence of jgi.p|Nanoce1779_2|591157 >mRNA_5026-protein ID=mRNA_5026-protein|Name=jgi.p|Nanoce1779_2|591157|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MHRLQDLFRNLQGGGQVPTPDGPVVDTSEKVHISSLALLKMLKHGRAGVP
MEVMGLMLGNFVDDYTVNCIDVFAMPQSGTSVTVEAVDPVFQHKMLEMLK
QTGRPEMVVGWYHSHPGFGCWLSGVDVNTQQSFEQLNQRAVAVVVDPIQS
VKGKVVIDAFRTINPQLMLLNQEPRQTTSNVGHLNKPSIQALIHGLNRHY
YSIVIDYRKNELEEQMLMNLHKKSWTYGLKLQRFEDHHKTNEMTVEAMLK
LSKDYNERVQEEEGKTAEERIVANVGKIDPKRHLESDVAALMASNIVQCL
GAMLDTIVF* back to topmRNA from alignment at scaffold_12:271457..273393- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5026 ID=mRNA_5026|Name=jgi.p|Nanoce1779_2|591157|organism=Nannochloropsis oceanica|type=mRNA|length=1937bp|location=Sequence derived from alignment at scaffold_12:271457..273393- (Nannochloropsis oceanica)
GTTGTATTTCCCGAATTCCATGACACACAACACGCCACTTCGCCTCGTCC
ATGACCTCATGCCCTTTGCATAGCCGATTGGAGTACTCTAGTTTTCTCTG
AAAACCAACTTTACATTCGTTTCTACCGCTTTATTCACCTTTCCTTCTCC
TCCAAGACCACCACAGGCGCGCAACGACTTCTAAGAGGCCCAGGGACAGG
AAATCGGCACGTCAGGGAGACGCGACCGCAAGCAGACAACACCAATACCA
TGCATCGCTTGCAAGACCTCTTCCGCAATCTTCAAGGTAAATAAGCTCGG
GGGGCTTTGGGGTGGACGCTGTTGTTGCATATGGTGCTTTCCCAGGCCGC
CTCATGCTCACTCTCCCCTTTCTCTTGCGCCATCAGGCGGAGGCCAAGTG
CCCACACCCGACGGGCCTGTTGTGGACACGTCCGAAAAGGTGCATATCAG
CTCATTGGCGTTGCTCAAGATGCTTAAGCACGGGCGCGCAGGGGTGCCAA
TGGAGGTCATGGGCTTGATGCTCGGTAACTTCGTTGACGACTACACTGTG
AATTGCATCGATGTATTTGCCATGCCGCAGTCGGGGACAAGCGTGACGGT
GGAGGCAGTGGACCCAGTGTTTCAGCATAAGATGTTGGAGATGCTCAAGC
AGACGGGACGGCCTGAGATGGTTGTCGGCTGGTGAGTGCTGAGAGGAAGT
GAGGGAGGGAGAGAGGAAGGGGAGGAGAAAAAGTACTGGGGGAACGGCCG
GGCTCTTAGGCAACGCAAACAGACTCACAAATTCTGACACGAATTTCCAT
CCTCGCAAACATACAGGTACCACAGTCACCCCGGATTTGGATGCTGGCTC
TCAGGTGTGGACGTCAACACGCAGCAGGTACGAGGAAGAGAGGGAGGAAG
CGCTGGAGGAGGGGAGGAGGGGAGGACATAGTGCATTTTCCACATGTTTT
CTGTGCAAGATTGGACCCTGACCCTAACTATCCATTCTGACCTCTTAGAG
CTTCGAGCAATTGAACCAGCGTGCCGTGGCCGTGGTGGTCGACCCGATCC
AGTCCGTTAAGGGCAAGGTAGTCATCGACGCTTTCAGAACCATCAACCCT
CAACTCATGTTGCTCAATCAAGAACCGAGGCAGACCACTTCCAACGTCGG
TCACCTGAACAAGCCCAGTATCCAGGCTTTGATCCACGGGCTGAATCGGC
ATTACTACTCCATTGTGATCGACTACCGCAAGAATGAGCTGGAGGAGCAG
GTACATGGGGAGGAAAGGAGGGAGGGGGGGAAGGCGAAGGAAAAAGAGAG
AGTGGGATGATCAAATCATTTTGTCACTTAGCGAGAGGCAACGATAGAGG
CACACTTTTTCTTACATTGTCCATTCACTTCCTCGTCCCTCCACCCTCCC
TTCCCCCTTATTTTTTGTTGTTGCTTCATTCTCCTTTTCTGCCCTGTAGA
TGCTTATGAACCTGCATAAAAAGAGCTGGACGTACGGTTTGAAGCTGCAG
CGGTTTGAGGACCACCACAAGACTAACGAGATGACCGTCGAGGTGAGATT
CGGGAGTATAAGATAGAAGAACGTGAAGGAGAAGGGTGAATGCATTGCGA
TTGGTTTCTTTTGTGTCGTAATGGCTTTAGGTAGCAAGGTTAGGCCTGGC
CATTTTTACAACCGTTTATCTTTCCTTTCCTGCGTATTTCTTTCTGTTTA
TTTCTACCCTTCCCTTCCATCTAGGCCATGCTTAAGCTGAGCAAGGACTA
CAACGAACGGGTGCAAGAGGAGGAGGGAAAGACGGCGGAAGAGCGCATCG
TTGCCAACGTTGGGAAGATCGACCCCAAGCGCCACTTGGAGAGTGACGTT
GCCGCATTGATGGCCAGCAATATCGTCCAATGCCTCGGTGCCATGCTCGA
TACAATCGTCTTTTGAGCAGGAGGGAAGGAAGAAGGG back to topCoding sequence (CDS) from alignment at scaffold_12:271457..273393- >mRNA_5026 ID=mRNA_5026|Name=jgi.p|Nanoce1779_2|591157|organism=Nannochloropsis oceanica|type=CDS|length=5580bp|location=Sequence derived from alignment at scaffold_12:271457..273393- (Nannochloropsis oceanica)
GCCATGCTTAAGCTGAGCAAGGACTACAACGAACGGGTGCAAGAGGAGGA
GGGAAAGACGGCGGAAGAGCGCATCGTTGCCAACGTTGGGAAGATCGACC
CCAAGCGCCACTTGGAGAGTGACGTTGCCGCATTGATGGCCAGCAATATC
GTCCAATGCCTCGGTGCCATGCTCGATACAATCGTCTTTTGAATGCTTAT
GAACCTGCATAAAAAGAGCTGGACGTACGGTTTGAAGCTGCAGCGGTTTG
AGGACCACCACAAGACTAACGAGATGACCGTCGAGAGCTTCGAGCAATTG
AACCAGCGTGCCGTGGCCGTGGTGGTCGACCCGATCCAGTCCGTTAAGGG
CAAGGTAGTCATCGACGCTTTCAGAACCATCAACCCTCAACTCATGTTGC
TCAATCAAGAACCGAGGCAGACCACTTCCAACGTCGGTCACCTGAACAAG
CCCAGTATCCAGGCTTTGATCCACGGGCTGAATCGGCATTACTACTCCAT
TGTGATCGACTACCGCAAGAATGAGCTGGAGGAGCAGGTACCACAGTCAC
CCCGGATTTGGATGCTGGCTCTCAGGTGTGGACGTCAACACGCAGCAGGC
GGAGGCCAAGTGCCCACACCCGACGGGCCTGTTGTGGACACGTCCGAAAA
GGTGCATATCAGCTCATTGGCGTTGCTCAAGATGCTTAAGCACGGGCGCG
CAGGGGTGCCAATGGAGGTCATGGGCTTGATGCTCGGTAACTTCGTTGAC
GACTACACTGTGAATTGCATCGATGTATTTGCCATGCCGCAGTCGGGGAC
AAGCGTGACGGTGGAGGCAGTGGACCCAGTGTTTCAGCATAAGATGTTGG
AGATGCTCAAGCAGACGGGACGGCCTGAGATGGTTGTCGGCTGATGCATC
GCTTGCAAGACCTCTTCCGCAATCTTCAAGGCCATGCTTAAGCTGAGCAA
GGACTACAACGAACGGGTGCAAGAGGAGGAGGGAAAGACGGCGGAAGAGC
GCATCGTTGCCAACGTTGGGAAGATCGACCCCAAGCGCCACTTGGAGAGT
GACGTTGCCGCATTGATGGCCAGCAATATCGTCCAATGCCTCGGTGCCAT
GCTCGATACAATCGTCTTTTGAATGCTTATGAACCTGCATAAAAAGAGCT
GGACGTACGGTTTGAAGCTGCAGCGGTTTGAGGACCACCACAAGACTAAC
GAGATGACCGTCGAGAGCTTCGAGCAATTGAACCAGCGTGCCGTGGCCGT
GGTGGTCGACCCGATCCAGTCCGTTAAGGGCAAGGTAGTCATCGACGCTT
TCAGAACCATCAACCCTCAACTCATGTTGCTCAATCAAGAACCGAGGCAG
ACCACTTCCAACGTCGGTCACCTGAACAAGCCCAGTATCCAGGCTTTGAT
CCACGGGCTGAATCGGCATTACTACTCCATTGTGATCGACTACCGCAAGA
ATGAGCTGGAGGAGCAGGTACCACAGTCACCCCGGATTTGGATGCTGGCT
CTCAGGTGTGGACGTCAACACGCAGCAGGCGGAGGCCAAGTGCCCACACC
CGACGGGCCTGTTGTGGACACGTCCGAAAAGGTGCATATCAGCTCATTGG
CGTTGCTCAAGATGCTTAAGCACGGGCGCGCAGGGGTGCCAATGGAGGTC
ATGGGCTTGATGCTCGGTAACTTCGTTGACGACTACACTGTGAATTGCAT
CGATGTATTTGCCATGCCGCAGTCGGGGACAAGCGTGACGGTGGAGGCAG
TGGACCCAGTGTTTCAGCATAAGATGTTGGAGATGCTCAAGCAGACGGGA
CGGCCTGAGATGGTTGTCGGCTGATGCATCGCTTGCAAGACCTCTTCCGC
AATCTTCAAGGCCATGCTTAAGCTGAGCAAGGACTACAACGAACGGGTGC
AAGAGGAGGAGGGAAAGACGGCGGAAGAGCGCATCGTTGCCAACGTTGGG
AAGATCGACCCCAAGCGCCACTTGGAGAGTGACGTTGCCGCATTGATGGC
CAGCAATATCGTCCAATGCCTCGGTGCCATGCTCGATACAATCGTCTTTT
GAATGCTTATGAACCTGCATAAAAAGAGCTGGACGTACGGTTTGAAGCTG
CAGCGGTTTGAGGACCACCACAAGACTAACGAGATGACCGTCGAGAGCTT
CGAGCAATTGAACCAGCGTGCCGTGGCCGTGGTGGTCGACCCGATCCAGT
CCGTTAAGGGCAAGGTAGTCATCGACGCTTTCAGAACCATCAACCCTCAA
CTCATGTTGCTCAATCAAGAACCGAGGCAGACCACTTCCAACGTCGGTCA
CCTGAACAAGCCCAGTATCCAGGCTTTGATCCACGGGCTGAATCGGCATT
ACTACTCCATTGTGATCGACTACCGCAAGAATGAGCTGGAGGAGCAGGTA
CCACAGTCACCCCGGATTTGGATGCTGGCTCTCAGGTGTGGACGTCAACA
CGCAGCAGGCGGAGGCCAAGTGCCCACACCCGACGGGCCTGTTGTGGACA
CGTCCGAAAAGGTGCATATCAGCTCATTGGCGTTGCTCAAGATGCTTAAG
CACGGGCGCGCAGGGGTGCCAATGGAGGTCATGGGCTTGATGCTCGGTAA
CTTCGTTGACGACTACACTGTGAATTGCATCGATGTATTTGCCATGCCGC
AGTCGGGGACAAGCGTGACGGTGGAGGCAGTGGACCCAGTGTTTCAGCAT
AAGATGTTGGAGATGCTCAAGCAGACGGGACGGCCTGAGATGGTTGTCGG
CTGATGCATCGCTTGCAAGACCTCTTCCGCAATCTTCAAGGCCATGCTTA
AGCTGAGCAAGGACTACAACGAACGGGTGCAAGAGGAGGAGGGAAAGACG
GCGGAAGAGCGCATCGTTGCCAACGTTGGGAAGATCGACCCCAAGCGCCA
CTTGGAGAGTGACGTTGCCGCATTGATGGCCAGCAATATCGTCCAATGCC
TCGGTGCCATGCTCGATACAATCGTCTTTTGAATGCTTATGAACCTGCAT
AAAAAGAGCTGGACGTACGGTTTGAAGCTGCAGCGGTTTGAGGACCACCA
CAAGACTAACGAGATGACCGTCGAGAGCTTCGAGCAATTGAACCAGCGTG
CCGTGGCCGTGGTGGTCGACCCGATCCAGTCCGTTAAGGGCAAGGTAGTC
ATCGACGCTTTCAGAACCATCAACCCTCAACTCATGTTGCTCAATCAAGA
ACCGAGGCAGACCACTTCCAACGTCGGTCACCTGAACAAGCCCAGTATCC
AGGCTTTGATCCACGGGCTGAATCGGCATTACTACTCCATTGTGATCGAC
TACCGCAAGAATGAGCTGGAGGAGCAGGTACCACAGTCACCCCGGATTTG
GATGCTGGCTCTCAGGTGTGGACGTCAACACGCAGCAGGCGGAGGCCAAG
TGCCCACACCCGACGGGCCTGTTGTGGACACGTCCGAAAAGGTGCATATC
AGCTCATTGGCGTTGCTCAAGATGCTTAAGCACGGGCGCGCAGGGGTGCC
AATGGAGGTCATGGGCTTGATGCTCGGTAACTTCGTTGACGACTACACTG
TGAATTGCATCGATGTATTTGCCATGCCGCAGTCGGGGACAAGCGTGACG
GTGGAGGCAGTGGACCCAGTGTTTCAGCATAAGATGTTGGAGATGCTCAA
GCAGACGGGACGGCCTGAGATGGTTGTCGGCTGATGCATCGCTTGCAAGA
CCTCTTCCGCAATCTTCAAGGCCATGCTTAAGCTGAGCAAGGACTACAAC
GAACGGGTGCAAGAGGAGGAGGGAAAGACGGCGGAAGAGCGCATCGTTGC
CAACGTTGGGAAGATCGACCCCAAGCGCCACTTGGAGAGTGACGTTGCCG
CATTGATGGCCAGCAATATCGTCCAATGCCTCGGTGCCATGCTCGATACA
ATCGTCTTTTGAATGCTTATGAACCTGCATAAAAAGAGCTGGACGTACGG
TTTGAAGCTGCAGCGGTTTGAGGACCACCACAAGACTAACGAGATGACCG
TCGAGAGCTTCGAGCAATTGAACCAGCGTGCCGTGGCCGTGGTGGTCGAC
CCGATCCAGTCCGTTAAGGGCAAGGTAGTCATCGACGCTTTCAGAACCAT
CAACCCTCAACTCATGTTGCTCAATCAAGAACCGAGGCAGACCACTTCCA
ACGTCGGTCACCTGAACAAGCCCAGTATCCAGGCTTTGATCCACGGGCTG
AATCGGCATTACTACTCCATTGTGATCGACTACCGCAAGAATGAGCTGGA
GGAGCAGGTACCACAGTCACCCCGGATTTGGATGCTGGCTCTCAGGTGTG
GACGTCAACACGCAGCAGGCGGAGGCCAAGTGCCCACACCCGACGGGCCT
GTTGTGGACACGTCCGAAAAGGTGCATATCAGCTCATTGGCGTTGCTCAA
GATGCTTAAGCACGGGCGCGCAGGGGTGCCAATGGAGGTCATGGGCTTGA
TGCTCGGTAACTTCGTTGACGACTACACTGTGAATTGCATCGATGTATTT
GCCATGCCGCAGTCGGGGACAAGCGTGACGGTGGAGGCAGTGGACCCAGT
GTTTCAGCATAAGATGTTGGAGATGCTCAAGCAGACGGGACGGCCTGAGA
TGGTTGTCGGCTGATGCATCGCTTGCAAGACCTCTTCCGCAATCTTCAAG
GCCATGCTTAAGCTGAGCAAGGACTACAACGAACGGGTGCAAGAGGAGGA
GGGAAAGACGGCGGAAGAGCGCATCGTTGCCAACGTTGGGAAGATCGACC
CCAAGCGCCACTTGGAGAGTGACGTTGCCGCATTGATGGCCAGCAATATC
GTCCAATGCCTCGGTGCCATGCTCGATACAATCGTCTTTTGAATGCTTAT
GAACCTGCATAAAAAGAGCTGGACGTACGGTTTGAAGCTGCAGCGGTTTG
AGGACCACCACAAGACTAACGAGATGACCGTCGAGAGCTTCGAGCAATTG
AACCAGCGTGCCGTGGCCGTGGTGGTCGACCCGATCCAGTCCGTTAAGGG
CAAGGTAGTCATCGACGCTTTCAGAACCATCAACCCTCAACTCATGTTGC
TCAATCAAGAACCGAGGCAGACCACTTCCAACGTCGGTCACCTGAACAAG
CCCAGTATCCAGGCTTTGATCCACGGGCTGAATCGGCATTACTACTCCAT
TGTGATCGACTACCGCAAGAATGAGCTGGAGGAGCAGGTACCACAGTCAC
CCCGGATTTGGATGCTGGCTCTCAGGTGTGGACGTCAACACGCAGCAGGC
GGAGGCCAAGTGCCCACACCCGACGGGCCTGTTGTGGACACGTCCGAAAA
GGTGCATATCAGCTCATTGGCGTTGCTCAAGATGCTTAAGCACGGGCGCG
CAGGGGTGCCAATGGAGGTCATGGGCTTGATGCTCGGTAACTTCGTTGAC
GACTACACTGTGAATTGCATCGATGTATTTGCCATGCCGCAGTCGGGGAC
AAGCGTGACGGTGGAGGCAGTGGACCCAGTGTTTCAGCATAAGATGTTGG
AGATGCTCAAGCAGACGGGACGGCCTGAGATGGTTGTCGGCTGATGCATC
GCTTGCAAGACCTCTTCCGCAATCTTCAAG back to top
|