jgi.p|Nanoce1779_2|591152, mRNA_5025 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591152
Unique NamemRNA_5025
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length792
Alignment locationscaffold_12:270356..271277 +

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Properties
Property NameValue
TranscriptId591238
TrackFilteredModels2
ProteinId591152
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:270356..271277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591152gene_5025Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591152mRNA_5025-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5025CDS_5025Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5025 ID=mRNA_5025|Name=jgi.p|Nanoce1779_2|591152|organism=Nannochloropsis oceanica|type=mRNA|length=792bp
ACAGCCCAAGCCCACTATGCCGGCTGCGGAGCTCAAGTGGGGCGCTGGTC
TGATCGCCTTCTCCCCCATTTCCTCACTCTTTCTCCTCGTCGTCACCAAG
CGGCCGGAGCTTGTCATCATCAGCATCATCGGAGCCTTTGCCTACCTCGT
CGCCTTGCTCTTGTCATCGGCTTTGTGGGCCGTGCTGGGGCCAGGCAAGC
AATTCGCTGCACTGACGGTGGTGATGGGTGTGATATGCCAAGCCTTGATG
AGGGCATGCCTCTACAAACTCTACCACAAAACGGAAATTTTGATCAAGTC
TGCCAACCACCCCTTCCTCCACATGCCGTTAAACGACGTGACTTCTTCCT
TGTCAGCAGGCACGGGTTATGCGGTCATGCATTGCGTCATGCTATTTGGG
AGTGTCCTTGCCTCTGGCTCGTCAGACCCCGGCGTGTTGTACGCACCATC
CTGCCGGGGAAGCCCCTTGGTGCTGGTCCTGGCATTCCTAGCACTGGCAT
TCACGTTGCTCGACCTTTGCTTCATGGCCTTGACATTTTTGTACATGCGC
CGACGGATGATACGACGAATGGTCGTTATGTTGGGGTTGCATTTGGTGGC
GAGTGGTGTGACGATCTCCAACAAGATGGACAATGGCTGCACGGTCTCTT
TGCCTCTTGTCTATGGCGTGGTGGCCGCTGCTCTTCTAACTACCGTGCGG
GAATGGAGGGAGCTGCGCGAAGATACCTAGAGAAGTTATGACAGATGAAC
AAAGGCATATACCCAAATGAAAGAAAAAATGTCTGATGTAAA
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protein sequence of jgi.p|Nanoce1779_2|591152

>mRNA_5025-protein ID=mRNA_5025-protein|Name=jgi.p|Nanoce1779_2|591152|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MPAAELKWGAGLIAFSPISSLFLLVVTKRPELVIISIIGAFAYLVALLLS
SALWAVLGPGKQFAALTVVMGVICQALMRACLYKLYHKTEILIKSANHPF
LHMPLNDVTSSLSAGTGYAVMHCVMLFGSVLASGSSDPGVLYAPSCRGSP
LVLVLAFLALAFTLLDLCFMALTFLYMRRRMIRRMVVMLGLHLVASGVTI
SNKMDNGCTVSLPLVYGVVAAALLTTVREWRELREDT*
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mRNA from alignment at scaffold_12:270356..271277+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5025 ID=mRNA_5025|Name=jgi.p|Nanoce1779_2|591152|organism=Nannochloropsis oceanica|type=mRNA|length=922bp|location=Sequence derived from alignment at scaffold_12:270356..271277+ (Nannochloropsis oceanica)
ACAGCCCAAGCCCACTATGCCGGCTGCGGAGCTCAAGTGGGGCGCTGGTC
TGATCGCCTTCTCCCCCATTTCCTCACTCTTTCTCCTCGTCGTCACCAAG
CGGCCGGAGCTTGTCATCATCAGCATCATCGGAGCCTTTGCCTACCTCGT
CGCCTTGCTCTTGTCATCGGCTTTGTGGGCCGTGCTGGGGCCAGGCAAGC
AATTCGCTGCACTGACGGTGGTGATGGGTGTGATATGCCAAGCCTTGATG
AGGGCATGCCTCTACAAACTCTACCACAAAACGGAAATTTTGATCAAGTC
TGCCAACCACCCCTTCCTCCACATGCCGTTAAACGACGTGACTTCTTCCT
TGTCAGCAGGCACGGGTTATGCGGTCATGCATTGCGTCATGCTATTTGGG
AGTGTCCTTGCCTCTGGCTCGTCAGACCCCGGCGTGTTGTACGCACCATC
CTGCCGGGGAAGCCCCTTGGTGCTGGTCCTGGCATTCCTAGCACTGGCAT
TCACGTTGCTCGACCTTTGCTTCATGGCCTTGACATTTTTGTACATGCGC
CGACGGATGATACGACGAATGGTCGTTATGTTGGGGTTGCATTTGGTGGC
GAGTGGTGTGGTAAGTATGCTGGGGAGGGAAGAGAGGTGGGTTATGGAAG
TGACTGCCCGAGAGAGTGCATTCCCTACGCATTTCGATATCACACCAACC
GATGTTTTTCCTCATTCCATTCTCTTTTCGGTACTTTAAGACGATCTCCA
ACAAGATGGACAATGGCTGCACGGTCTCTTTGCCTCTTGTCTATGGCGTG
GTGGCCGCTGCTCTTCTAACTACCGTGCGGGAATGGAGGGAGCTGCGCGA
AGATACCTAGAGAAGTTATGACAGATGAACAAAGGCATATACCCAAATGA
AAGAAAAAATGTCTGATGTAAA
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Coding sequence (CDS) from alignment at scaffold_12:270356..271277+

>mRNA_5025 ID=mRNA_5025|Name=jgi.p|Nanoce1779_2|591152|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_12:270356..271277+ (Nannochloropsis oceanica)
ATGCCGGCTGCGGAGCTCAAGTGGGGCGCTGGTCTGATCGCCTTCTCCCC
CATTTCCTCACTCTTTCTCCTCGTCGTCACCAAGCGGCCGGAGCTTGTCA
TCATCAGCATCATCGGAGCCTTTGCCTACCTCGTCGCCTTGCTCTTGTCA
TCGGCTTTGTGGGCCGTGCTGGGGCCAGGCAAGCAATTCGCTGCACTGAC
GGTGGTGATGGGTGTGATATGCCAAGCCTTGATGAGGGCATGCCTCTACA
AACTCTACCACAAAACGGAAATTTTGATCAAGTCTGCCAACCACCCCTTC
CTCCACATGCCGTTAAACGACGTGACTTCTTCCTTGTCAGCAGGCACGGG
TTATGCGGTCATGCATTGCGTCATGCTATTTGGGAGTGTCCTTGCCTCTG
GCTCGTCAGACCCCGGCGTGTTGTACGCACCATCCTGCCGGGGAAGCCCC
TTGGTGCTGGTCCTGGCATTCCTAGCACTGGCATTCACGTTGCTCGACCT
TTGCTTCATGGCCTTGACATTTTTGTACATGCGCCGACGGATGATACGAC
GAATGGTCGTTATGTTGGGGTTGCATTTGGTGGCGAGTGGTGTGACGATC
TCCAACAAGATGGACAATGGCTGCACGGTCTCTTTGCCTCTTGTCTATGG
CGTGGTGGCCGCTGCTCTTCTAACTACCGTGCGGGAATGGAGGGAGCTGC
GCGAAGATACCTAGATGCCGGCTGCGGAGCTCAAGTGGGGCGCTGGTCTG
ATCGCCTTCTCCCCCATTTCCTCACTCTTTCTCCTCGTCGTCACCAAGCG
GCCGGAGCTTGTCATCATCAGCATCATCGGAGCCTTTGCCTACCTCGTCG
CCTTGCTCTTGTCATCGGCTTTGTGGGCCGTGCTGGGGCCAGGCAAGCAA
TTCGCTGCACTGACGGTGGTGATGGGTGTGATATGCCAAGCCTTGATGAG
GGCATGCCTCTACAAACTCTACCACAAAACGGAAATTTTGATCAAGTCTG
CCAACCACCCCTTCCTCCACATGCCGTTAAACGACGTGACTTCTTCCTTG
TCAGCAGGCACGGGTTATGCGGTCATGCATTGCGTCATGCTATTTGGGAG
TGTCCTTGCCTCTGGCTCGTCAGACCCCGGCGTGTTGTACGCACCATCCT
GCCGGGGAAGCCCCTTGGTGCTGGTCCTGGCATTCCTAGCACTGGCATTC
ACGTTGCTCGACCTTTGCTTCATGGCCTTGACATTTTTGTACATGCGCCG
ACGGATGATACGACGAATGGTCGTTATGTTGGGGTTGCATTTGGTGGCGA
GTGGTGTGACGATCTCCAACAAGATGGACAATGGCTGCACGGTCTCTTTG
CCTCTTGTCTATGGCGTGGTGGCCGCTGCTCTTCTAACTACCGTGCGGGA
ATGGAGGGAGCTGCGCGAAGATACCTAG
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Synonyms
Publications