jgi.p|Nanoce1779_2|528919, mRNA_5024 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528919
Unique NamemRNA_5024
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length396
Alignment locationscaffold_12:269459..269995 -

Link to JBrowse

Properties
Property NameValue
TranscriptId529005
TrackFilteredModels2
ProteinId528919
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:269459..269995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528919gene_5024Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528919mRNA_5024-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5024CDS_5024Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5024 ID=mRNA_5024|Name=jgi.p|Nanoce1779_2|528919|organism=Nannochloropsis oceanica|type=mRNA|length=396bp
ATGCAGGGTGTAGCAAGTTCCCAGGCCATGAGTGAGGTGGACGTCATCAT
CCGAGATCTAAAGGCTCAACGGGGCTTTTCCTCCTACATGATAATGAACA
ACGACGGAATCATTATCAAGTACGATAACGTCGAATACAGAAGGGCATTG
CACATTGCAGGTCTGGTGCTTGACCTGGCATGCAAGGCCAAGGGAGCTGT
GCGCGATTTGTTGGAGCCCCACGAGAATGATGTCGAATCCATGCGGATTA
AAACGAGGGATTACGAGCTCATCGTGGGGCAGAGTGGAAACTTTACTTTG
GTGGTTGTACAGCAACAAGGCCATCAGATGCCTTCGGTAGCCGCGCAGCC
TCTTGGCAGTGTCAGCGGCAAGAAGAGCGATGGTATTGTGAAGTAA
back to top

protein sequence of jgi.p|Nanoce1779_2|528919

>mRNA_5024-protein ID=mRNA_5024-protein|Name=jgi.p|Nanoce1779_2|528919|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MQGVASSQAMSEVDVIIRDLKAQRGFSSYMIMNNDGIIIKYDNVEYRRAL
HIAGLVLDLACKAKGAVRDLLEPHENDVESMRIKTRDYELIVGQSGNFTL
VVVQQQGHQMPSVAAQPLGSVSGKKSDGIVK*
back to top

mRNA from alignment at scaffold_12:269459..269995-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5024 ID=mRNA_5024|Name=jgi.p|Nanoce1779_2|528919|organism=Nannochloropsis oceanica|type=mRNA|length=537bp|location=Sequence derived from alignment at scaffold_12:269459..269995- (Nannochloropsis oceanica)
ATGCAGGGTGTAGCAAGTTCCCAGGCCATGAGTGAGGTGGACGTCATCAT
CCGAGATCTAAAGGCTCAACGGGGCTTTTCCTCCTACATGATAATGAACA
ACGACGGTAGGTCTGATGATTTTGGAACTGTACCTTTACTTTCTCTGATG
TTTTTTTTTTTACCAATAAAAGGAATCATTATCAAGTACGATAACGTCGA
ATACAGAAGGGCATTGCACATTGCAGGTCTGGTGCTTGACCTGGCATGCA
AGGCCAAGGGAGCTGTGCGCGATTTGTTGGAGCCCCACGAGGTACGACTT
AAAACGAGCCACTCAACCAGCACTTCATATTTTTATTTCCTATTCTCTCG
TATTTCACTCACATAGAATGATGTCGAATCCATGCGGATTAAAACGAGGG
ATTACGAGCTCATCGTGGGGCAGAGTGGAAACTTTACTTTGGTGGTTGTA
CAGCAACAAGGCCATCAGATGCCTTCGGTAGCCGCGCAGCCTCTTGGCAG
TGTCAGCGGCAAGAAGAGCGATGGTATTGTGAAGTAA
back to top

Coding sequence (CDS) from alignment at scaffold_12:269459..269995-

>mRNA_5024 ID=mRNA_5024|Name=jgi.p|Nanoce1779_2|528919|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_12:269459..269995- (Nannochloropsis oceanica)
AATGATGTCGAATCCATGCGGATTAAAACGAGGGATTACGAGCTCATCGT
GGGGCAGAGTGGAAACTTTACTTTGGTGGTTGTACAGCAACAAGGCCATC
AGATGCCTTCGGTAGCCGCGCAGCCTCTTGGCAGTGTCAGCGGCAAGAAG
AGCGATGGTATTGTGAAGTAAGAATCATTATCAAGTACGATAACGTCGAA
TACAGAAGGGCATTGCACATTGCAGGTCTGGTGCTTGACCTGGCATGCAA
GGCCAAGGGAGCTGTGCGCGATTTGTTGGAGCCCCACGAGATGCAGGGTG
TAGCAAGTTCCCAGGCCATGAGTGAGGTGGACGTCATCATCCGAGATCTA
AAGGCTCAACGGGGCTTTTCCTCCTACATGATAATGAACAACGACGAATG
ATGTCGAATCCATGCGGATTAAAACGAGGGATTACGAGCTCATCGTGGGG
CAGAGTGGAAACTTTACTTTGGTGGTTGTACAGCAACAAGGCCATCAGAT
GCCTTCGGTAGCCGCGCAGCCTCTTGGCAGTGTCAGCGGCAAGAAGAGCG
ATGGTATTGTGAAGTAAGAATCATTATCAAGTACGATAACGTCGAATACA
GAAGGGCATTGCACATTGCAGGTCTGGTGCTTGACCTGGCATGCAAGGCC
AAGGGAGCTGTGCGCGATTTGTTGGAGCCCCACGAGATGCAGGGTGTAGC
AAGTTCCCAGGCCATGAGTGAGGTGGACGTCATCATCCGAGATCTAAAGG
CTCAACGGGGCTTTTCCTCCTACATGATAATGAACAACGACGAATGATGT
CGAATCCATGCGGATTAAAACGAGGGATTACGAGCTCATCGTGGGGCAGA
GTGGAAACTTTACTTTGGTGGTTGTACAGCAACAAGGCCATCAGATGCCT
TCGGTAGCCGCGCAGCCTCTTGGCAGTGTCAGCGGCAAGAAGAGCGATGG
TATTGTGAAGTAAGAATCATTATCAAGTACGATAACGTCGAATACAGAAG
GGCATTGCACATTGCAGGTCTGGTGCTTGACCTGGCATGCAAGGCCAAGG
GAGCTGTGCGCGATTTGTTGGAGCCCCACGAGATGCAGGGTGTAGCAAGT
TCCCAGGCCATGAGTGAGGTGGACGTCATCATCCGAGATCTAAAGGCTCA
ACGGGGCTTTTCCTCCTACATGATAATGAACAACGACG
back to top
Synonyms
Publications