jgi.p|Nanoce1779_2|591149, mRNA_5023 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591149
Unique NamemRNA_5023
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length635
Alignment locationscaffold_12:268666..269377 +

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Properties
Property NameValue
TranscriptId591235
TrackFilteredModels2
ProteinId591149
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:268666..269377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591149gene_5023Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591149mRNA_5023-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5023CDS_5023Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5023 ID=mRNA_5023|Name=jgi.p|Nanoce1779_2|591149|organism=Nannochloropsis oceanica|type=mRNA|length=635bp
ACAGCGTCCCTCTCCCTGATACCCGTGAGGACGATAACGACTAGAGAGCA
GCAGCAAACGCAATGGAGCGGTTACCAGACTATGTCCTGGTCGCTGACGC
TCAGGTGGATTTGAATTCGCTGGTTCAGAGGGTTGGGGACCCTGGGGCAG
GGGCCATTGCCACTTTCCTGGGCGTAACACGGGACAATTTCAATGGCAAG
CCCGTCGTCCGCCTTGAGTACGAGGGCTACGTGCCCATGGCTGAAAAGGT
GATGCATGCAATTTGCGTCGAGATCCGAAACCGGTGGGCCGTCCTTTCCG
TTGCCATGGAGCACCGGCTTGGCACTTGCCCAGTAGGGGAGGCAAGCGTG
GGAATCGCAATTTCATCTCCGCATCGGCGCGAAGCTCTGAAAGCAGTTGC
ATTTGCGATAGATGCCATCAAGGCGAATGTCCCTGTATGGAAGAAGGAGT
TCTACGCTGATGGCAGCTACCACAAAGGACCGGATGGGTCGTGCATCGAG
TGTGCCGGGGCACATGCATGGAAAGTTAATGCAGAATGGCAGGGTGGGGA
TGGAGTGATCAGCAAGAAGGAAGTGAAAAAAGCGAGGCAGGAAGATGACC
TCTCTGTAAATCAAAATGAAATATGAAACAATTTG
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protein sequence of jgi.p|Nanoce1779_2|591149

>mRNA_5023-protein ID=mRNA_5023-protein|Name=jgi.p|Nanoce1779_2|591149|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MERLPDYVLVADAQVDLNSLVQRVGDPGAGAIATFLGVTRDNFNGKPVVR
LEYEGYVPMAEKVMHAICVEIRNRWAVLSVAMEHRLGTCPVGEASVGIAI
SSPHRREALKAVAFAIDAIKANVPVWKKEFYADGSYHKGPDGSCIECAGA
HAWKVNAEWQGGDGVISKKEVKKARQEDDLSVNQNEI*
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mRNA from alignment at scaffold_12:268666..269377+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5023 ID=mRNA_5023|Name=jgi.p|Nanoce1779_2|591149|organism=Nannochloropsis oceanica|type=mRNA|length=712bp|location=Sequence derived from alignment at scaffold_12:268666..269377+ (Nannochloropsis oceanica)
ACAGCGTCCCTCTCCCTGATACCCGTGAGGACGATAACGACTAGAGAGCA
GCAGCAAACGCAATGGAGCGGTTACCAGACTATGTCCTGGTCGCTGACGC
TCAGGTGGATTTGAATTCGCTGGTTCAGAGGGTTGGGGACCCTGGGGCAG
GGGCCATTGCCACTTTCCTGGGCGTAACACGGGACAATTTCAATGGCAAG
CCCGTCGTCCGCCTTGAGTACGAGGGCTACGTGCCCATGGCTGAAAAGGT
GATGCATGCAATTTGCGTCGAGGTAAGAACGTGCGTGCATTTGGGTGTCA
TCATCAGGTTGCAGCCTTATCATTGTCCCTCTCCTTCCCACCCCTCTAGA
TCCGAAACCGGTGGGCCGTCCTTTCCGTTGCCATGGAGCACCGGCTTGGC
ACTTGCCCAGTAGGGGAGGCAAGCGTGGGAATCGCAATTTCATCTCCGCA
TCGGCGCGAAGCTCTGAAAGCAGTTGCATTTGCGATAGATGCCATCAAGG
CGAATGTCCCTGTATGGAAGAAGGAGTTCTACGCTGATGGCAGCTACCAC
AAAGGACCGGATGGGTCGTGCATCGAGTGTGCCGGGGCACATGCATGGAA
AGTTAATGCAGAATGGCAGGGTGGGGATGGAGTGATCAGCAAGAAGGAAG
TGAAAAAAGCGAGGCAGGAAGATGACCTCTCTGTAAATCAAAATGAAATA
TGAAACAATTTG
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Coding sequence (CDS) from alignment at scaffold_12:268666..269377+

>mRNA_5023 ID=mRNA_5023|Name=jgi.p|Nanoce1779_2|591149|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_12:268666..269377+ (Nannochloropsis oceanica)
ATGGAGCGGTTACCAGACTATGTCCTGGTCGCTGACGCTCAGGTGGATTT
GAATTCGCTGGTTCAGAGGGTTGGGGACCCTGGGGCAGGGGCCATTGCCA
CTTTCCTGGGCGTAACACGGGACAATTTCAATGGCAAGCCCGTCGTCCGC
CTTGAGTACGAGGGCTACGTGCCCATGGCTGAAAAGGTGATGCATGCAAT
TTGCGTCGAGATCCGAAACCGGTGGGCCGTCCTTTCCGTTGCCATGGAGC
ACCGGCTTGGCACTTGCCCAGTAGGGGAGGCAAGCGTGGGAATCGCAATT
TCATCTCCGCATCGGCGCGAAGCTCTGAAAGCAGTTGCATTTGCGATAGA
TGCCATCAAGGCGAATGTCCCTGTATGGAAGAAGGAGTTCTACGCTGATG
GCAGCTACCACAAAGGACCGGATGGGTCGTGCATCGAGTGTGCCGGGGCA
CATGCATGGAAAGTTAATGCAGAATGGCAGGGTGGGGATGGAGTGATCAG
CAAGAAGGAAGTGAAAAAAGCGAGGCAGGAAGATGACCTCTCTGTAAATC
AAAATGAAATATGAATGGAGCGGTTACCAGACTATGTCCTGGTCGCTGAC
GCTCAGGTGGATTTGAATTCGCTGGTTCAGAGGGTTGGGGACCCTGGGGC
AGGGGCCATTGCCACTTTCCTGGGCGTAACACGGGACAATTTCAATGGCA
AGCCCGTCGTCCGCCTTGAGTACGAGGGCTACGTGCCCATGGCTGAAAAG
GTGATGCATGCAATTTGCGTCGAGATCCGAAACCGGTGGGCCGTCCTTTC
CGTTGCCATGGAGCACCGGCTTGGCACTTGCCCAGTAGGGGAGGCAAGCG
TGGGAATCGCAATTTCATCTCCGCATCGGCGCGAAGCTCTGAAAGCAGTT
GCATTTGCGATAGATGCCATCAAGGCGAATGTCCCTGTATGGAAGAAGGA
GTTCTACGCTGATGGCAGCTACCACAAAGGACCGGATGGGTCGTGCATCG
AGTGTGCCGGGGCACATGCATGGAAAGTTAATGCAGAATGGCAGGGTGGG
GATGGAGTGATCAGCAAGAAGGAAGTGAAAAAAGCGAGGCAGGAAGATGA
CCTCTCTGTAAATCAAAATGAAATATGA
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Synonyms
Publications