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Properties
| Property Name | Value |
|---|
| TranscriptId | 591226 |
| Track | FilteredModels2 |
| ProteinId | 591140 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:262184..264565 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5021 ID=mRNA_5021|Name=jgi.p|Nanoce1779_2|591140|organism=Nannochloropsis oceanica|type=mRNA|length=1865bp
AGTCCCCTGACATACTTTCCACCGCGGCAGGTTTCGGTCTTCGACTACCA
AGCAAAATCGTACAGGCAACACCAGCGACTTCCATCACAGGTGTGGCAAA
GCAAGTGGACTGAAGGGGGAGGAGACTGAAGAAAGGAGCACCAACAGTTG
CGGTACCAGCAACAAGAGGAGCAATAATCCATGACGGACAACAAGGAAGC
GCGGAACCGGCAAATTCCTATAGTCTGCCCCGGTCACAGCCGGCCTTTGG
CAGGTGTGGAATATAGCCCGGTGACGCCCGACGGGGTCTTCCTCATTAGC
GCTTGTCATGATAAAGAGCCCATGTTGCGAAATGGAAAGACCGGGGATTG
GATCGGAACTTTTAAGGGGCACAAAGGCGCGGTTTGGAGCGCCAAGTTGA
ATAAGGACGCAACATTTGCCCTGACGGGCTCGGGGGACTTCAGCGCCAAA
GTCTGGGACGCCATCACCGGCGCCGAGCTTCACACTTTCGCGCACAAACA
CATCGTGAAGACCGTGGAGTTTTCGCCTGACTCCCGGAAATTTGTCTCTG
GTGGACACGAGGGAAAATTGCGTTTGTTCGATTTGGTGGAGCCCGAGGCG
CCGGCTGTGGTGATTGACCTGCCCCCTCCCTCCTCCGGTGGCACCACGTC
AATCACGAAAGTCATTTGGGACCGCACAGATAGCAACAGGGTCATCACAG
GCACGAGTGATGGGAAGGTACGGGCGTGGGATTTGAGGAGCAGGCAGGAG
ATCCACTCGGCGGAGGTGCAAGGAACCGTGATGGACCTGGAGCTCTCTCC
TACAGTTGGCGATATTCTTACCATCTGCGCCGGCGACAAGGTGACCTTCC
TCGACGCCTCCTCACTCCTCCCCCTCAAGTCCTTCCAAATGCCCATGCAC
TTCCGGGAAGAAGGCGGTGCATCCCTGCATCCCGATCGCCAACTCTTTAT
TGCTGGAGGATCCGATTTGTGGGTGCGGGTCTTCGATTTTAATACCGGCG
CGGAGCTTGAGTGTCATAAAGGCCATCATGGCCCAGTACGATGTCTGCGG
TATGCACCTGAAGGTGGGAGTTACGCGACGGGGAGTGAGGATGGAACGGT
TCGTATCTGGGCGACGCAGGTGGATGCATAGCGATTCTGCGCTTCTGGTG
GGGAGGTTGTGACCTTCCCACTTCCTCCTTCTCCAAACATTCGTTTCTAT
GTTGTAAAAGCATGGCAAGCATAACAATACATAAAGTGCTGTTCGCTCCA
ATCTAAGATTAGGTCGAAAAAGAAATGAGACAATTGCGACGCATTCCAAA
AAATAAAACATTTTCGACACCAAAACGTATGGGCCATGACACATTCTGTT
GTAATCGGTTTTTACTCTCTCGGACGAGGCATCGCTCGCCTAACACTCAA
GCTCGAAATTAGACCCGTGGCTTTCGTGAAGACTTGCCTGCCACTCTCGC
AGAGTGCAGGCACTGGAGACGCAAGTTTTGCCCACGCAACAAAAGTGTCA
AGAATGGGAAGGGATTATTTTCTGTGCATTCACCCTGGCAGCCAGGAGGC
TAAGTGGTGCCCCTGCCTTGAGGCAGTCCCTCATTTTCTGCCTACACTAG
AACACACACCGCATCACCGACTCAGGCCGGACGAGAAGTAAATATGCTTA
TGAACAGGCGTGGTGGAGAGGTCGCCATGTTCAAGGCAGGCGTGAACTGG
GGATCGCAAAGCATGGAGGAAGAAAACGACTGGGATTGAGGTGGTCTGCC
GTCCCGTGTCTTATCACTTCCCGTCCCCCTCCCCCTCACAACCACAGATC
GCCTCTTCTCAGCCACCACACGTGAGATACGACAGTCCATCACCCATCCA
TGCGACCAATCAGCT back to topprotein sequence of jgi.p|Nanoce1779_2|591140 >mRNA_5021-protein ID=mRNA_5021-protein|Name=jgi.p|Nanoce1779_2|591140|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MTDNKEARNRQIPIVCPGHSRPLAGVEYSPVTPDGVFLISACHDKEPMLR
NGKTGDWIGTFKGHKGAVWSAKLNKDATFALTGSGDFSAKVWDAITGAEL
HTFAHKHIVKTVEFSPDSRKFVSGGHEGKLRLFDLVEPEAPAVVIDLPPP
SSGGTTSITKVIWDRTDSNRVITGTSDGKVRAWDLRSRQEIHSAEVQGTV
MDLELSPTVGDILTICAGDKVTFLDASSLLPLKSFQMPMHFREEGGASLH
PDRQLFIAGGSDLWVRVFDFNTGAELECHKGHHGPVRCLRYAPEGGSYAT
GSEDGTVRIWATQVDA* back to topmRNA from alignment at scaffold_12:262184..264565- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5021 ID=mRNA_5021|Name=jgi.p|Nanoce1779_2|591140|organism=Nannochloropsis oceanica|type=mRNA|length=2382bp|location=Sequence derived from alignment at scaffold_12:262184..264565- (Nannochloropsis oceanica)
AGTCCCCTGACATACTTTCCACCGCGGCAGGTTTCGGTCTTCGACTACCA
AGCAAAATCGTACAGGCAACACCAGCGACTTCCATCACAGGTGTGGCAAA
GCAAGTGGACTGAAGGGGGAGGAGACTGAAGAAAGGAGCACCAACAGTTG
CGGTACCAGCAACAAGAGGAGCAATAATCCATGACGGACAACAAGGAAGC
GCGGAACCGGCAAATTCCTATAGGTAAGAGCTCTATTGGTTTTAGAGAGA
GAGAAGTTGAAAGGCATTTCATCCGGCTAGGGGAATGGCATCCGGCTCGG
GGATGAAAGACCGCGGAGACCTCGTGCGAGATATGAGTGAAGGCCGCTTG
ACAAAAAAAGCGTTAAGTGAGGACACCAGGTGCGCTTTATGGTCTTCGGG
AGTCTGATTTGCCCTTTGACCCTTCCCAATCACTTGCTTTTTTTAAAGTC
TGCCCCGGTCACAGCCGGCCTTTGGCAGGTGTGGAATATAGCCCGGTGAC
GCCCGACGGGGTCTTCCTCATTAGCGCTTGTCATGATAAAGAGCCCATGT
TGCGAAATGGAAAGACCGGGGATTGGATCGGAACTTTTAAGGGGCACAAA
GGCGCGGTTTGGAGCGCCAAGTTGAATAAGGACGCAACATTTGCCCTGAC
GGGCTCGGGGGACTTCAGGTGCGTGAGAGGGAGAAGGAGGAGGAAGGAAG
AAGGGAGGTTTGGACCAGGATTCCACCTTATTTCCACATCTGGCCCACGC
ATATGTATACACGTTGCCCACCCGCTCTCCCTCCTCCCCCCCCTCGCCAC
CTCCTCGCTACCTCCCCTCCAGCGCCAAAGTCTGGGACGCCATCACCGGC
GCCGAGCTTCACACTTTCGCGCACAAACACATCGTGAAGACCGTGGAGTT
TTCGCCTGACTCCCGGAAATTTGTCTCTGGTGGACACGAGGGAAAATTGC
GTTTGTTCGATTTGGTGGAGCCCGAGGCGCCGGCTGTGGTGATTGACCTG
CCCCCTCCCTCCTCCGGTGGCACCACGTCAATCACGAAAGTCATTTGGGA
CCGCACAGATAGCAACAGGGTCATCACAGGCACGAGTGATGGGAAGGTAC
GGGCGTGGGATTTGAGGAGCAGGCAGGAGATCCACTCGGCGGAGGTGCAA
GGTGAGAAGGCGGCGGAGGGAAGTAGGATGGAAAGAAGATGGGAGGGGGG
ATGGCTGTCGTCAACAAATGCTCTGCTCGTGTTTCCCACACTTACGTCTT
TCATTCTTTTTCGTCCTTTCATTGACGTCTACAAAATAGGAACCGTGATG
GACCTGGAGCTCTCTCCTACAGTTGGCGATATTCTTACCATCTGCGCCGG
CGACAAGGTGACCTTCCTCGACGCCTCCTCACTCCTCCCCCTCAAGTCCT
TCCAAATGCCCATGCACTTCCGGGAAGAAGGCGGTGCATCCCTGCATCCC
GATCGCCAACTCTTTATTGCTGGAGGATCCGATTTGTGGGTGCGGGTCTT
CGATTTTAATACCGGCGCGGAGCTTGAGTGTCATAAAGGCCATCATGGCC
CAGTACGATGTCTGCGGTATGCACCTGAAGGTGGGAGTTACGCGACGGGG
AGTGAGGATGGAACGGTTCGTATCTGGGCGACGCAGGTGGATGCATAGCG
ATTCTGCGCTTCTGGTGGGGAGGTTGTGACCTTCCCACTTCCTCCTTCTC
CAAACATTCGTTTCTATGTTGTAAAAGCATGGCAAGCATAACAATACATA
AAGTGCTGTTCGCTCCAATCTAAGATTAGGTCGAAAAAGAAATGAGACAA
TTGCGACGCATTCCAAAAAATAAAACATTTTCGACACCAAAACGTATGGG
CCATGACACATTCTGTTGTAATCGGTTTTTACTCTCTCGGACGAGGCATC
GCTCGCCTAACACTCAAGCTCGAAATTAGACCCGTGGCTTTCGTGAAGAC
TTGCCTGCCACTCTCGCAGAGTGCAGGCACTGGAGACGCAAGTTTTGCCC
ACGCAACAAAAGTGTCAAGAATGGGAAGGGATTATTTTCTGTGCATTCAC
CCTGGCAGCCAGGAGGCTAAGTGGTGCCCCTGCCTTGAGGCAGTCCCTCA
TTTTCTGCCTACACTAGAACACACACCGCATCACCGACTCAGGCCGGACG
AGAAGTAAATATGCTTATGAACAGGCGTGGTGGAGAGGTCGCCATGTTCA
AGGCAGGCGTGAACTGGGGATCGCAAAGCATGGAGGAAGAAAACGACTGG
GATTGAGGTGGTCTGCCGTCCCGTGTCTTATCACTTCCCGTCCCCCTCCC
CCTCACAACCACAGATCGCCTCTTCTCAGCCACCACACGTGAGATACGAC
AGTCCATCACCCATCCATGCGACCAATCAGCT back to topCoding sequence (CDS) from alignment at scaffold_12:262184..264565- >mRNA_5021 ID=mRNA_5021|Name=jgi.p|Nanoce1779_2|591140|organism=Nannochloropsis oceanica|type=CDS|length=3804bp|location=Sequence derived from alignment at scaffold_12:262184..264565- (Nannochloropsis oceanica)
GAACCGTGATGGACCTGGAGCTCTCTCCTACAGTTGGCGATATTCTTACC
ATCTGCGCCGGCGACAAGGTGACCTTCCTCGACGCCTCCTCACTCCTCCC
CCTCAAGTCCTTCCAAATGCCCATGCACTTCCGGGAAGAAGGCGGTGCAT
CCCTGCATCCCGATCGCCAACTCTTTATTGCTGGAGGATCCGATTTGTGG
GTGCGGGTCTTCGATTTTAATACCGGCGCGGAGCTTGAGTGTCATAAAGG
CCATCATGGCCCAGTACGATGTCTGCGGTATGCACCTGAAGGTGGGAGTT
ACGCGACGGGGAGTGAGGATGGAACGGTTCGTATCTGGGCGACGCAGGTG
GATGCATAGCGCCAAAGTCTGGGACGCCATCACCGGCGCCGAGCTTCACA
CTTTCGCGCACAAACACATCGTGAAGACCGTGGAGTTTTCGCCTGACTCC
CGGAAATTTGTCTCTGGTGGACACGAGGGAAAATTGCGTTTGTTCGATTT
GGTGGAGCCCGAGGCGCCGGCTGTGGTGATTGACCTGCCCCCTCCCTCCT
CCGGTGGCACCACGTCAATCACGAAAGTCATTTGGGACCGCACAGATAGC
AACAGGGTCATCACAGGCACGAGTGATGGGAAGGTACGGGCGTGGGATTT
GAGGAGCAGGCAGGAGATCCACTCGGCGGAGGTGCAAGTCTGCCCCGGTC
ACAGCCGGCCTTTGGCAGGTGTGGAATATAGCCCGGTGACGCCCGACGGG
GTCTTCCTCATTAGCGCTTGTCATGATAAAGAGCCCATGTTGCGAAATGG
AAAGACCGGGGATTGGATCGGAACTTTTAAGGGGCACAAAGGCGCGGTTT
GGAGCGCCAAGTTGAATAAGGACGCAACATTTGCCCTGACGGGCTCGGGG
GACTTCAGATGACGGACAACAAGGAAGCGCGGAACCGGCAAATTCCTATA
GGAACCGTGATGGACCTGGAGCTCTCTCCTACAGTTGGCGATATTCTTAC
CATCTGCGCCGGCGACAAGGTGACCTTCCTCGACGCCTCCTCACTCCTCC
CCCTCAAGTCCTTCCAAATGCCCATGCACTTCCGGGAAGAAGGCGGTGCA
TCCCTGCATCCCGATCGCCAACTCTTTATTGCTGGAGGATCCGATTTGTG
GGTGCGGGTCTTCGATTTTAATACCGGCGCGGAGCTTGAGTGTCATAAAG
GCCATCATGGCCCAGTACGATGTCTGCGGTATGCACCTGAAGGTGGGAGT
TACGCGACGGGGAGTGAGGATGGAACGGTTCGTATCTGGGCGACGCAGGT
GGATGCATAGCGCCAAAGTCTGGGACGCCATCACCGGCGCCGAGCTTCAC
ACTTTCGCGCACAAACACATCGTGAAGACCGTGGAGTTTTCGCCTGACTC
CCGGAAATTTGTCTCTGGTGGACACGAGGGAAAATTGCGTTTGTTCGATT
TGGTGGAGCCCGAGGCGCCGGCTGTGGTGATTGACCTGCCCCCTCCCTCC
TCCGGTGGCACCACGTCAATCACGAAAGTCATTTGGGACCGCACAGATAG
CAACAGGGTCATCACAGGCACGAGTGATGGGAAGGTACGGGCGTGGGATT
TGAGGAGCAGGCAGGAGATCCACTCGGCGGAGGTGCAAGTCTGCCCCGGT
CACAGCCGGCCTTTGGCAGGTGTGGAATATAGCCCGGTGACGCCCGACGG
GGTCTTCCTCATTAGCGCTTGTCATGATAAAGAGCCCATGTTGCGAAATG
GAAAGACCGGGGATTGGATCGGAACTTTTAAGGGGCACAAAGGCGCGGTT
TGGAGCGCCAAGTTGAATAAGGACGCAACATTTGCCCTGACGGGCTCGGG
GGACTTCAGATGACGGACAACAAGGAAGCGCGGAACCGGCAAATTCCTAT
AGGAACCGTGATGGACCTGGAGCTCTCTCCTACAGTTGGCGATATTCTTA
CCATCTGCGCCGGCGACAAGGTGACCTTCCTCGACGCCTCCTCACTCCTC
CCCCTCAAGTCCTTCCAAATGCCCATGCACTTCCGGGAAGAAGGCGGTGC
ATCCCTGCATCCCGATCGCCAACTCTTTATTGCTGGAGGATCCGATTTGT
GGGTGCGGGTCTTCGATTTTAATACCGGCGCGGAGCTTGAGTGTCATAAA
GGCCATCATGGCCCAGTACGATGTCTGCGGTATGCACCTGAAGGTGGGAG
TTACGCGACGGGGAGTGAGGATGGAACGGTTCGTATCTGGGCGACGCAGG
TGGATGCATAGCGCCAAAGTCTGGGACGCCATCACCGGCGCCGAGCTTCA
CACTTTCGCGCACAAACACATCGTGAAGACCGTGGAGTTTTCGCCTGACT
CCCGGAAATTTGTCTCTGGTGGACACGAGGGAAAATTGCGTTTGTTCGAT
TTGGTGGAGCCCGAGGCGCCGGCTGTGGTGATTGACCTGCCCCCTCCCTC
CTCCGGTGGCACCACGTCAATCACGAAAGTCATTTGGGACCGCACAGATA
GCAACAGGGTCATCACAGGCACGAGTGATGGGAAGGTACGGGCGTGGGAT
TTGAGGAGCAGGCAGGAGATCCACTCGGCGGAGGTGCAAGTCTGCCCCGG
TCACAGCCGGCCTTTGGCAGGTGTGGAATATAGCCCGGTGACGCCCGACG
GGGTCTTCCTCATTAGCGCTTGTCATGATAAAGAGCCCATGTTGCGAAAT
GGAAAGACCGGGGATTGGATCGGAACTTTTAAGGGGCACAAAGGCGCGGT
TTGGAGCGCCAAGTTGAATAAGGACGCAACATTTGCCCTGACGGGCTCGG
GGGACTTCAGATGACGGACAACAAGGAAGCGCGGAACCGGCAAATTCCTA
TAGGAACCGTGATGGACCTGGAGCTCTCTCCTACAGTTGGCGATATTCTT
ACCATCTGCGCCGGCGACAAGGTGACCTTCCTCGACGCCTCCTCACTCCT
CCCCCTCAAGTCCTTCCAAATGCCCATGCACTTCCGGGAAGAAGGCGGTG
CATCCCTGCATCCCGATCGCCAACTCTTTATTGCTGGAGGATCCGATTTG
TGGGTGCGGGTCTTCGATTTTAATACCGGCGCGGAGCTTGAGTGTCATAA
AGGCCATCATGGCCCAGTACGATGTCTGCGGTATGCACCTGAAGGTGGGA
GTTACGCGACGGGGAGTGAGGATGGAACGGTTCGTATCTGGGCGACGCAG
GTGGATGCATAGCGCCAAAGTCTGGGACGCCATCACCGGCGCCGAGCTTC
ACACTTTCGCGCACAAACACATCGTGAAGACCGTGGAGTTTTCGCCTGAC
TCCCGGAAATTTGTCTCTGGTGGACACGAGGGAAAATTGCGTTTGTTCGA
TTTGGTGGAGCCCGAGGCGCCGGCTGTGGTGATTGACCTGCCCCCTCCCT
CCTCCGGTGGCACCACGTCAATCACGAAAGTCATTTGGGACCGCACAGAT
AGCAACAGGGTCATCACAGGCACGAGTGATGGGAAGGTACGGGCGTGGGA
TTTGAGGAGCAGGCAGGAGATCCACTCGGCGGAGGTGCAAGTCTGCCCCG
GTCACAGCCGGCCTTTGGCAGGTGTGGAATATAGCCCGGTGACGCCCGAC
GGGGTCTTCCTCATTAGCGCTTGTCATGATAAAGAGCCCATGTTGCGAAA
TGGAAAGACCGGGGATTGGATCGGAACTTTTAAGGGGCACAAAGGCGCGG
TTTGGAGCGCCAAGTTGAATAAGGACGCAACATTTGCCCTGACGGGCTCG
GGGGACTTCAGATGACGGACAACAAGGAAGCGCGGAACCGGCAAATTCCT
ATAG back to top
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