jgi.p|Nanoce1779_2|591135, mRNA_5020 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591135
Unique Name	mRNA_5020
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2558
Alignment location	scaffold_12:259702..262259 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591221
Track	FilteredModels2
ProteinId	591135

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:259702..262259 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591135	gene_5020	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591135	mRNA_5020-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5020	CDS_5020	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:259702..262259-
coding sequence from alignment at scaffold_12:259702..262259-

mRNA sequence

>mRNA_5020 ID=mRNA_5020|Name=jgi.p|Nanoce1779_2|591135|organism=Nannochloropsis oceanica|type=mRNA|length=2558bp
AACCACAGATCGCCTCTTCTCAGCCACCACACGTGAGATACGACAGTCCA
TCACCCATCCATGCGACCAATCAGCTCCCCCCTCGTGTGCGTCGCGGCGG
CCGCAGGTGCCCTTCTTCTCCAGGTTGGTTGTTCTTCTTCCGCTACCATG
GCCGAGGCCGCTTTTTTGGCCCCGGCATCCAGCTGCATCACCCTTGCACG
CAGCACCTTCATCAAGTCTAAAACCAGTCTCGCGGCCGACGCAGCCTCGG
ACGTGACTGCTCTCTCTGACATCCCCAATAGCCGGAGCCTATACCAGCAA
CAGCAGCTCCAGGAGCAACTTGACCTGCAAGCGCAGTTGGCTGCCATTCC
CGACACGGGATCGCCGTGCCGCATCAAAGTCATTGGTGTGGGTGGGGGAG
GAAGCAATGCGGTGAATCGCATGGTGACGCAAGACATTACAGGGGTGGAA
TTCTGGGCTATTAACACCGACGCGCAAGCCTTGGCGAAGTCCAAGGTGCC
TTTCAAGCTCAACATCGGTAATCACGTCACCCGTGGTCTGGGCGCCGGCG
GCAAGCCTATCGTAGGACGAAATGCTGCAGAAGAGTCAAGGGAGGCAATT
GCTGAGGCAGTGGCGGGGGCAGATTTAGTGTTTGTCACTGCGGGGATGGG
AGGAGGGACGGGCTCGGGTGCTGCGCCGGTGGTGGCGGAAATTGCGAAAG
ATCTTGGCATTTTGACGGTGGGTGTGGTGACGCGTCCCTTTGGCTTCGAA
GGGCGGCAGAGGATGGCTCAGGCGAAGTCGGCGATTCAGGAGATGCAGAG
TAAGGTGGATACGTTGATCACGGTTAGCAACGATAGGTTACTGCAAATAG
TACCAGACAACTTCCCGTTGACCGACGCGTTTTTGGTGGCAGACGAGGCC
TTGAGGGATGGCGTGGTTGGAATTTCGGACATCATTGTCAAACCGGGTCT
GATCAATGTTGATTTTGCGGATGTCCGCGCGGTGATGCAGAATGCTGGAA
CGGCGCTGATGGGGACTGGTTGGGGCAAGGGGAAGACAAGGGCGCAGGAT
GCCGCAGTGAGTGCGATTAAAAGCCCTTTGCTCGATTTTCCCATTAAAAA
AGCAAAAGGGATCGTGTTCAATGTGTGTGGAGGCACGGATTTGACTCTGG
GGGAGATCAACGCAGCGGCGCAGGTGATTTATGAGAATGTGGCTGATGAC
GCCAACATCATTTTCGGCGCTGTAGTAGACGAAAAGCTCAAGGATCAAGT
TTCGATTACTGTTCTCGCTACTGGTTTCTCCCTCGACCCCAACGGCGATG
GTGACAACCTTGACGACCTTCTTACCACTCTCGACCAGCAGCTCTCTGCT
CCCGGCCGCCCCAAGCGTGTGCCGCAACCGCCGCCGCCGCCACCGCAGCA
GCAACAACCGGCTTACTCCACCCCTTCTCCCAACGTCTCGCAGCAGCCTC
CTCCCATGTATGACGAATCGGGATATGAGGGGGCTGGAGCGCCGGGTGTC
AAGGGCGGGAAGGAAGCAGGGAAGGGAGGTGTCGGTCGGTTTTTCAAGCT
GTTTCGGAGATCGTAGATAGTGAGTATGATTGTTAATCGATTGATTGATT
TATTAAAATGAGGAAAGAAGATGCCGTTCAGGGAGGGAAGTGAAAAATGT
GAAGCAGCAGCAGTCATACCAAGATCGCTTGGAGCTTGGTGGAAGGGGCG
CGCGAAGAGAATTGTGAGAAGGGGAATACAAGTAGGAAAGGCCTGAAGGA
ACGGTAGAGAAAACAGAGGACGGGAAGCCGTCAGGAGGTATCGTTGCGAA
GCAGCCAAAAAAGAGTATAAGAAGAAGTAGTAAAGGAGGGAAGAAAGGAG
GGAAGGGAGGGGGGAAGGAGGGACGGAACCAGAGTACCTACATGTGTTGT
CTTCTTCAGGTCAGTTTCCATGTTAGTTATTCTCTCCCCCTATTTTTTTG
TTTCGTTTTGTGCGCTGTAGATAGATAAAGTCATTTCCCCCGTTCCAATT
CGGCAAGATTTGGCACCATTCCTATTTCCTCCTACCCACACATAACGCGT
CAGTAAGCATCATTCCTGAGGGATATAGGATGAGGAACTTCCGTCGGCAG
CACCGACGACGGCTTGCGGTCTCTCCTCTGATGTGTCTTCTTTCGTCTTC
ACTCAACGGCAGTAGGCTGATTGTCCAGTGTTGTTTGTAGGTGCTTCCTT
CCTTGAGCGGTGTCTTGGAGAGAGAGAGGGCGCAGGAGTATGGAGGGCCG
GAGCTTACAGAAACCTAAAAGAGAAAGAAAGAAAGTGTTAAGTTTGAAAC
AGAAGCAATAAAAAGCAAGACAGCCTATGAGCGAGATCTAAATCGTGTTT
CTCTTCTGGAATTAGCTCTTGTCGTAGCTGCCGACCTGGTCCTTGTCTTC
AATCTCTTCTCTGTCAGTAGGAGTCTCGTCCTCCCGCTCCTTTTCACCAC
TCTCTCCCCTCTTCCCACCCAAACACCCTTCTCTCCGCCCGCCCCTCCCT
CCCTCCCTCCCTGCACTTCCCTATCCATCATGATACTGATGCCTGGGAGT
GTAGGCCC

protein sequence of jgi.p|Nanoce1779_2|591135

>mRNA_5020-protein ID=mRNA_5020-protein|Name=jgi.p|Nanoce1779_2|591135|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MRPISSPLVCVAAAAGALLLQVGCSSSATMAEAAFLAPASSCITLARSTF
IKSKTSLAADAASDVTALSDIPNSRSLYQQQQLQEQLDLQAQLAAIPDTG
SPCRIKVIGVGGGGSNAVNRMVTQDITGVEFWAINTDAQALAKSKVPFKL
NIGNHVTRGLGAGGKPIVGRNAAEESREAIAEAVAGADLVFVTAGMGGGT
GSGAAPVVAEIAKDLGILTVGVVTRPFGFEGRQRMAQAKSAIQEMQSKVD
TLITVSNDRLLQIVPDNFPLTDAFLVADEALRDGVVGISDIIVKPGLINV
DFADVRAVMQNAGTALMGTGWGKGKTRAQDAAVSAIKSPLLDFPIKKAKG
IVFNVCGGTDLTLGEINAAAQVIYENVADDANIIFGAVVDEKLKDQVSIT
VLATGFSLDPNGDGDNLDDLLTTLDQQLSAPGRPKRVPQPPPPPPQQQQP
AYSTPSPNVSQQPPPMYDESGYEGAGAPGVKGGKEAGKGGVGRFFKLFRR
S*

mRNA from alignment at scaffold_12:259702..262259-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5020 ID=mRNA_5020|Name=jgi.p|Nanoce1779_2|591135|organism=Nannochloropsis oceanica|type=mRNA|length=2558bp|location=Sequence derived from alignment at scaffold_12:259702..262259- (Nannochloropsis oceanica)
AACCACAGATCGCCTCTTCTCAGCCACCACACGTGAGATACGACAGTCCA
TCACCCATCCATGCGACCAATCAGCTCCCCCCTCGTGTGCGTCGCGGCGG
CCGCAGGTGCCCTTCTTCTCCAGGTTGGTTGTTCTTCTTCCGCTACCATG
GCCGAGGCCGCTTTTTTGGCCCCGGCATCCAGCTGCATCACCCTTGCACG
CAGCACCTTCATCAAGTCTAAAACCAGTCTCGCGGCCGACGCAGCCTCGG
ACGTGACTGCTCTCTCTGACATCCCCAATAGCCGGAGCCTATACCAGCAA
CAGCAGCTCCAGGAGCAACTTGACCTGCAAGCGCAGTTGGCTGCCATTCC
CGACACGGGATCGCCGTGCCGCATCAAAGTCATTGGTGTGGGTGGGGGAG
GAAGCAATGCGGTGAATCGCATGGTGACGCAAGACATTACAGGGGTGGAA
TTCTGGGCTATTAACACCGACGCGCAAGCCTTGGCGAAGTCCAAGGTGCC
TTTCAAGCTCAACATCGGTAATCACGTCACCCGTGGTCTGGGCGCCGGCG
GCAAGCCTATCGTAGGACGAAATGCTGCAGAAGAGTCAAGGGAGGCAATT
GCTGAGGCAGTGGCGGGGGCAGATTTAGTGTTTGTCACTGCGGGGATGGG
AGGAGGGACGGGCTCGGGTGCTGCGCCGGTGGTGGCGGAAATTGCGAAAG
ATCTTGGCATTTTGACGGTGGGTGTGGTGACGCGTCCCTTTGGCTTCGAA
GGGCGGCAGAGGATGGCTCAGGCGAAGTCGGCGATTCAGGAGATGCAGAG
TAAGGTGGATACGTTGATCACGGTTAGCAACGATAGGTTACTGCAAATAG
TACCAGACAACTTCCCGTTGACCGACGCGTTTTTGGTGGCAGACGAGGCC
TTGAGGGATGGCGTGGTTGGAATTTCGGACATCATTGTCAAACCGGGTCT
GATCAATGTTGATTTTGCGGATGTCCGCGCGGTGATGCAGAATGCTGGAA
CGGCGCTGATGGGGACTGGTTGGGGCAAGGGGAAGACAAGGGCGCAGGAT
GCCGCAGTGAGTGCGATTAAAAGCCCTTTGCTCGATTTTCCCATTAAAAA
AGCAAAAGGGATCGTGTTCAATGTGTGTGGAGGCACGGATTTGACTCTGG
GGGAGATCAACGCAGCGGCGCAGGTGATTTATGAGAATGTGGCTGATGAC
GCCAACATCATTTTCGGCGCTGTAGTAGACGAAAAGCTCAAGGATCAAGT
TTCGATTACTGTTCTCGCTACTGGTTTCTCCCTCGACCCCAACGGCGATG
GTGACAACCTTGACGACCTTCTTACCACTCTCGACCAGCAGCTCTCTGCT
CCCGGCCGCCCCAAGCGTGTGCCGCAACCGCCGCCGCCGCCACCGCAGCA
GCAACAACCGGCTTACTCCACCCCTTCTCCCAACGTCTCGCAGCAGCCTC
CTCCCATGTATGACGAATCGGGATATGAGGGGGCTGGAGCGCCGGGTGTC
AAGGGCGGGAAGGAAGCAGGGAAGGGAGGTGTCGGTCGGTTTTTCAAGCT
GTTTCGGAGATCGTAGATAGTGAGTATGATTGTTAATCGATTGATTGATT
TATTAAAATGAGGAAAGAAGATGCCGTTCAGGGAGGGAAGTGAAAAATGT
GAAGCAGCAGCAGTCATACCAAGATCGCTTGGAGCTTGGTGGAAGGGGCG
CGCGAAGAGAATTGTGAGAAGGGGAATACAAGTAGGAAAGGCCTGAAGGA
ACGGTAGAGAAAACAGAGGACGGGAAGCCGTCAGGAGGTATCGTTGCGAA
GCAGCCAAAAAAGAGTATAAGAAGAAGTAGTAAAGGAGGGAAGAAAGGAG
GGAAGGGAGGGGGGAAGGAGGGACGGAACCAGAGTACCTACATGTGTTGT
CTTCTTCAGGTCAGTTTCCATGTTAGTTATTCTCTCCCCCTATTTTTTTG
TTTCGTTTTGTGCGCTGTAGATAGATAAAGTCATTTCCCCCGTTCCAATT
CGGCAAGATTTGGCACCATTCCTATTTCCTCCTACCCACACATAACGCGT
CAGTAAGCATCATTCCTGAGGGATATAGGATGAGGAACTTCCGTCGGCAG
CACCGACGACGGCTTGCGGTCTCTCCTCTGATGTGTCTTCTTTCGTCTTC
ACTCAACGGCAGTAGGCTGATTGTCCAGTGTTGTTTGTAGGTGCTTCCTT
CCTTGAGCGGTGTCTTGGAGAGAGAGAGGGCGCAGGAGTATGGAGGGCCG
GAGCTTACAGAAACCTAAAAGAGAAAGAAAGAAAGTGTTAAGTTTGAAAC
AGAAGCAATAAAAAGCAAGACAGCCTATGAGCGAGATCTAAATCGTGTTT
CTCTTCTGGAATTAGCTCTTGTCGTAGCTGCCGACCTGGTCCTTGTCTTC
AATCTCTTCTCTGTCAGTAGGAGTCTCGTCCTCCCGCTCCTTTTCACCAC
TCTCTCCCCTCTTCCCACCCAAACACCCTTCTCTCCGCCCGCCCCTCCCT
CCCTCCCTCCCTGCACTTCCCTATCCATCATGATACTGATGCCTGGGAGT
GTAGGCCC

Coding sequence (CDS) from alignment at scaffold_12:259702..262259-

>mRNA_5020 ID=mRNA_5020|Name=jgi.p|Nanoce1779_2|591135|organism=Nannochloropsis oceanica|type=CDS|length=1506bp|location=Sequence derived from alignment at scaffold_12:259702..262259- (Nannochloropsis oceanica)
ATGCGACCAATCAGCTCCCCCCTCGTGTGCGTCGCGGCGGCCGCAGGTGC
CCTTCTTCTCCAGGTTGGTTGTTCTTCTTCCGCTACCATGGCCGAGGCCG
CTTTTTTGGCCCCGGCATCCAGCTGCATCACCCTTGCACGCAGCACCTTC
ATCAAGTCTAAAACCAGTCTCGCGGCCGACGCAGCCTCGGACGTGACTGC
TCTCTCTGACATCCCCAATAGCCGGAGCCTATACCAGCAACAGCAGCTCC
AGGAGCAACTTGACCTGCAAGCGCAGTTGGCTGCCATTCCCGACACGGGA
TCGCCGTGCCGCATCAAAGTCATTGGTGTGGGTGGGGGAGGAAGCAATGC
GGTGAATCGCATGGTGACGCAAGACATTACAGGGGTGGAATTCTGGGCTA
TTAACACCGACGCGCAAGCCTTGGCGAAGTCCAAGGTGCCTTTCAAGCTC
AACATCGGTAATCACGTCACCCGTGGTCTGGGCGCCGGCGGCAAGCCTAT
CGTAGGACGAAATGCTGCAGAAGAGTCAAGGGAGGCAATTGCTGAGGCAG
TGGCGGGGGCAGATTTAGTGTTTGTCACTGCGGGGATGGGAGGAGGGACG
GGCTCGGGTGCTGCGCCGGTGGTGGCGGAAATTGCGAAAGATCTTGGCAT
TTTGACGGTGGGTGTGGTGACGCGTCCCTTTGGCTTCGAAGGGCGGCAGA
GGATGGCTCAGGCGAAGTCGGCGATTCAGGAGATGCAGAGTAAGGTGGAT
ACGTTGATCACGGTTAGCAACGATAGGTTACTGCAAATAGTACCAGACAA
CTTCCCGTTGACCGACGCGTTTTTGGTGGCAGACGAGGCCTTGAGGGATG
GCGTGGTTGGAATTTCGGACATCATTGTCAAACCGGGTCTGATCAATGTT
GATTTTGCGGATGTCCGCGCGGTGATGCAGAATGCTGGAACGGCGCTGAT
GGGGACTGGTTGGGGCAAGGGGAAGACAAGGGCGCAGGATGCCGCAGTGA
GTGCGATTAAAAGCCCTTTGCTCGATTTTCCCATTAAAAAAGCAAAAGGG
ATCGTGTTCAATGTGTGTGGAGGCACGGATTTGACTCTGGGGGAGATCAA
CGCAGCGGCGCAGGTGATTTATGAGAATGTGGCTGATGACGCCAACATCA
TTTTCGGCGCTGTAGTAGACGAAAAGCTCAAGGATCAAGTTTCGATTACT
GTTCTCGCTACTGGTTTCTCCCTCGACCCCAACGGCGATGGTGACAACCT
TGACGACCTTCTTACCACTCTCGACCAGCAGCTCTCTGCTCCCGGCCGCC
CCAAGCGTGTGCCGCAACCGCCGCCGCCGCCACCGCAGCAGCAACAACCG
GCTTACTCCACCCCTTCTCCCAACGTCTCGCAGCAGCCTCCTCCCATGTA
TGACGAATCGGGATATGAGGGGGCTGGAGCGCCGGGTGTCAAGGGCGGGA
AGGAAGCAGGGAAGGGAGGTGTCGGTCGGTTTTTCAAGCTGTTTCGGAGA
TCGTAG

Synonyms

Publications