jgi.p|Nanoce1779_2|577502, mRNA_502 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577502
Unique NamemRNA_502
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length828
Alignment locationscaffold_3:1212265..1213092 +

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Properties
Property NameValue
TranscriptId577588
TrackFilteredModels2
ProteinId577502
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1212265..1213092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577502gene_502Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577502mRNA_502-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_502CDS_502Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_502 ID=mRNA_502|Name=jgi.p|Nanoce1779_2|577502|organism=Nannochloropsis oceanica|type=mRNA|length=828bp
ACAGAGAGCGGGTTTACTACTCGGGGCTTGCTGCCTGGGACCCCTTGCAG
CAGCTAGCGTCTACCTCTGGAAGCACGCCCCTTTCCCCAACGCTGTGTCG
GCCGTCATGGATGCTGCATCGACAGCTGAGGCCAGCACTAGCACCAGCAC
CACGACGGCCGCGCTCATCTCCACCAAGGAACTGCGAGAGATTGGGCATG
AGGCGGTATGGTCTTTGTCGACGGCCAAGCCTGGCAACGGCGTGGAGCAA
ATTCGAGACGACAACATGGACACATACTGGCAGTCGGACGGAGCACAACC
CCACTTGATCAACGTGCAATTCCACAAGAAAATGACCATCTTGGAGGTGG
CGCTATACCTGGACTACAGTTTGGATGAATCTTATACCCCCAAAAAAATC
AGCATGAAGGCTGGCACCACGTTTCATGACCTGGTGGAGATCCAAGTGGT
CAATTTGAAGGAGCCGCAAGGATGGGTGAAGGTGCCTCTGCGCAACCCGT
ATGCCTACGGACCAGACGGCCCTGGCTCGCTCGTGGGGATGGACACTGGT
GAATCACAAGGAGGTCTTTTACGGGCTTTCTTCTTGCAAATAAGCATAAT
TGCCATGCATCAAAACGGGCGGGACACGCACGTGCGGCAAGCCAAGATTT
ACGGGCCTCGATCCCCGTTAGCGGCTTTCTGTGGACAGAGCCGGGTGGGA
ATGGACAGGGACTTGGGAGGCGTTTGTACAGTACCTGAGTTCACGACGTC
CGAATTGGCACAGTTTTCCACAGTGCGTTAGAAGTAGGACGAGGTGGAGA
CGGGGGGGGTGAGGGATAAGAGGGGGAG
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protein sequence of jgi.p|Nanoce1779_2|577502

>mRNA_502-protein ID=mRNA_502-protein|Name=jgi.p|Nanoce1779_2|577502|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MDAASTAEASTSTSTTTAALISTKELREIGHEAVWSLSTAKPGNGVEQIR
DDNMDTYWQSDGAQPHLINVQFHKKMTILEVALYLDYSLDESYTPKKISM
KAGTTFHDLVEIQVVNLKEPQGWVKVPLRNPYAYGPDGPGSLVGMDTGES
QGGLLRAFFLQISIIAMHQNGRDTHVRQAKIYGPRSPLAAFCGQSRVGMD
RDLGGVCTVPEFTTSELAQFSTVR*
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mRNA from alignment at scaffold_3:1212265..1213092+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_502 ID=mRNA_502|Name=jgi.p|Nanoce1779_2|577502|organism=Nannochloropsis oceanica|type=mRNA|length=828bp|location=Sequence derived from alignment at scaffold_3:1212265..1213092+ (Nannochloropsis oceanica)
ACAGAGAGCGGGTTTACTACTCGGGGCTTGCTGCCTGGGACCCCTTGCAG
CAGCTAGCGTCTACCTCTGGAAGCACGCCCCTTTCCCCAACGCTGTGTCG
GCCGTCATGGATGCTGCATCGACAGCTGAGGCCAGCACTAGCACCAGCAC
CACGACGGCCGCGCTCATCTCCACCAAGGAACTGCGAGAGATTGGGCATG
AGGCGGTATGGTCTTTGTCGACGGCCAAGCCTGGCAACGGCGTGGAGCAA
ATTCGAGACGACAACATGGACACATACTGGCAGTCGGACGGAGCACAACC
CCACTTGATCAACGTGCAATTCCACAAGAAAATGACCATCTTGGAGGTGG
CGCTATACCTGGACTACAGTTTGGATGAATCTTATACCCCCAAAAAAATC
AGCATGAAGGCTGGCACCACGTTTCATGACCTGGTGGAGATCCAAGTGGT
CAATTTGAAGGAGCCGCAAGGATGGGTGAAGGTGCCTCTGCGCAACCCGT
ATGCCTACGGACCAGACGGCCCTGGCTCGCTCGTGGGGATGGACACTGGT
GAATCACAAGGAGGTCTTTTACGGGCTTTCTTCTTGCAAATAAGCATAAT
TGCCATGCATCAAAACGGGCGGGACACGCACGTGCGGCAAGCCAAGATTT
ACGGGCCTCGATCCCCGTTAGCGGCTTTCTGTGGACAGAGCCGGGTGGGA
ATGGACAGGGACTTGGGAGGCGTTTGTACAGTACCTGAGTTCACGACGTC
CGAATTGGCACAGTTTTCCACAGTGCGTTAGAAGTAGGACGAGGTGGAGA
CGGGGGGGGTGAGGGATAAGAGGGGGAG
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Coding sequence (CDS) from alignment at scaffold_3:1212265..1213092+

>mRNA_502 ID=mRNA_502|Name=jgi.p|Nanoce1779_2|577502|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_3:1212265..1213092+ (Nannochloropsis oceanica)
ATGGATGCTGCATCGACAGCTGAGGCCAGCACTAGCACCAGCACCACGAC
GGCCGCGCTCATCTCCACCAAGGAACTGCGAGAGATTGGGCATGAGGCGG
TATGGTCTTTGTCGACGGCCAAGCCTGGCAACGGCGTGGAGCAAATTCGA
GACGACAACATGGACACATACTGGCAGTCGGACGGAGCACAACCCCACTT
GATCAACGTGCAATTCCACAAGAAAATGACCATCTTGGAGGTGGCGCTAT
ACCTGGACTACAGTTTGGATGAATCTTATACCCCCAAAAAAATCAGCATG
AAGGCTGGCACCACGTTTCATGACCTGGTGGAGATCCAAGTGGTCAATTT
GAAGGAGCCGCAAGGATGGGTGAAGGTGCCTCTGCGCAACCCGTATGCCT
ACGGACCAGACGGCCCTGGCTCGCTCGTGGGGATGGACACTGGTGAATCA
CAAGGAGGTCTTTTACGGGCTTTCTTCTTGCAAATAAGCATAATTGCCAT
GCATCAAAACGGGCGGGACACGCACGTGCGGCAAGCCAAGATTTACGGGC
CTCGATCCCCGTTAGCGGCTTTCTGTGGACAGAGCCGGGTGGGAATGGAC
AGGGACTTGGGAGGCGTTTGTACAGTACCTGAGTTCACGACGTCCGAATT
GGCACAGTTTTCCACAGTGCGTTAG
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Synonyms
Publications