jgi.p|Nanoce1779_2|591126, mRNA_5018 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591126
Unique Name	mRNA_5018
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	778
Alignment location	scaffold_12:254857..256313 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591212
Track	FilteredModels2
ProteinId	591126

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:254857..256313 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591126	gene_5018	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591126	mRNA_5018-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5018	CDS_5018	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:254857..256313+
coding sequence from alignment at scaffold_12:254857..256313+

mRNA sequence

>mRNA_5018 ID=mRNA_5018|Name=jgi.p|Nanoce1779_2|591126|organism=Nannochloropsis oceanica|type=mRNA|length=778bp
CAGGCCAATAGGAGCCATGGCCCTTAACGGCACGTCATCCTTGGAGGCGC
GCCAAGCCTTCTTACAGCTTCTTATGAGCCGCAAGGTCATGAACCAGAAA
GAGGTGGAAGATGCGTTCGCCATGTTGTCGGAAACGCTGAACTTGCGCGG
CTACATGGCACAATCAGAGATCAAATCGTGCCTATCCGAGTTGAACAAAG
ATTTGCATGAGTGCAATTTGCAAATCAAGGGGATGCTTCTGAACGGCACC
GAGGTTTATGCCATTGTCAACATTTTGAGCGACGAAGTGGCCAAGCTGCA
TGCGTCCAAGATGAAAGACTGGGAGAAGGCTTATTTTAAGGAGGTAATAA
GGACAATCTGCGAGAACGGCGGAGACCCTGTTGACAAGGACGAGCTGACC
GCGTTGCGTGTGCAAGTCGGGGGAACAGCGCCATATACTCGAGAGAAGGA
AGCAGTGCTCTATTTGTTGGAGGCAGAATTCTGGTTACAGAAGGATAAGC
ACGCCCGCCTATCATTGGGGCCGCGGACTTTCCTTGAGCTGAGTGACTTT
GTGCGGGCCCACGAGATGGAGATGCCTCAAATCCTCTACTTCTAAGGAAC
AAAAGAGCGGAAAAGTACGGGAGTTAGGAAAAAACACGAACTGTTATTGA
TTGGTGTCAGTGTATGTGTAAGTCCAGAGAGGTTGGCGAGTGGATTTTGG
AAGACAGGGAAAATACTGAAAGCGCAGATTGTGAGGCTAATTTACGGCTC
AAAGAAAGAAAAGCATGTACATGTAGCA

protein sequence of jgi.p|Nanoce1779_2|591126

>mRNA_5018-protein ID=mRNA_5018-protein|Name=jgi.p|Nanoce1779_2|591126|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MALNGTSSLEARQAFLQLLMSRKVMNQKEVEDAFAMLSETLNLRGYMAQS
EIKSCLSELNKDLHECNLQIKGMLLNGTEVYAIVNILSDEVAKLHASKMK
DWEKAYFKEVIRTICENGGDPVDKDELTALRVQVGGTAPYTREKEAVLYL
LEAEFWLQKDKHARLSLGPRTFLELSDFVRAHEMEMPQILYF*

mRNA from alignment at scaffold_12:254857..256313+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5018 ID=mRNA_5018|Name=jgi.p|Nanoce1779_2|591126|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at scaffold_12:254857..256313+ (Nannochloropsis oceanica)
CAGGCCAATAGGAGCCATGGCCCTTAACGGCACGTCATCCTTGGAGGCGC
GCCAAGCCTTCTTACAGCTTCTTATGGTAAGCACGCACTCGTCATCTCTC
ATTTTTCTCCTGCAGCGACAAGGAACTTATTCATCTCACCAAGGCGCCCA
TTCTTCGCAACCCCACCAGAGCCGCAAGGTCATGAACCAGAAAGAGGTGG
AAGATGCGTTCGCCATGTTGTCGGAAACGCTGAACTTGCGCGGCTACATG
GGTGAGTGTGAGAGGAGAAAGCGAAGGGCTTTGCATGTCCTTAGATACCT
TCACTCCCCCCCCGTCCCTCCCGGGGTCCTCACAAAACCCCTTCTCTAAC
CTCAAAGCACAATCAGAGATCAAATCGTGCCTATCCGAGTTGAACAAAGA
TTTGCATGAGTGCAATTTGCAAATCAAGGGGATGCTTCTGAACGGCACCG
AGGTTTATGCCATTGTCAACATTGTGCGTAGGGGAGGCAGGGAAAGAGGG
AACGGGTGAGGGGAGAGAGGGAATGAAGGGATGTGTGTCTTTCCACATTG
ATCGCGTCATGATGTGTGTCTTTCCACATTGATCGCGTCATAACATCTTC
CTCACCATTCTGTCTCATATTTTTGATTTTACAGTTGAGCGACGAAGTGG
CCAAGCTGCATGCGTCCAAGATGAAAGACTGGTTCGTTTTGGGGAGAGAC
GTGGAAAACGACATTCTGTCGCTGCATTTCATGAATATACGCTTGTATGT
TTTCTCGCCAAGTCTCTTTCGTGCCTTTTTCCTGTATACTCAGCTTTCAG
GGAATTCATGCGCACCAATTGTACCCATTCCCACAGGGAGAAGGCTTATT
TTAAGGAGGTAATAAGGACAATCTGCGAGAACGGCGGAGACCCTGTTGAC
AAGGACGAGCTGACCGCGTTGCGTGTGCAAGTCGGGGGAACAGCGCCATA
TACTCGAGTATGTGCACCGAGGGTAGGGAAGGAAGTAAGGGAGGATTGAA
AAAAGACACATCATGTTGTATGCTAACGTCCAACATTCCAATAGGAGAAG
GAAGCAGTGCTCTATTTGTTGGAGGCAGAATTCTGGTTACAGGTATGAAT
TATATACTCTTTACTCTCCTACCTTTTACTTGGTTCATCCGCTCTCTCCT
ATCATCCCTGACATCACAGAAGGATAAGCACGCCCGCCTATCATTGGGGC
CGCGGACTTTCCTTGAGCTGAGTGACTTTGTGCGGGCCCACGAGATGGAG
ATGCCTCAAATCCTCTACTTCTAAGGAACAAAAGAGCGGAAAAGTACGGG
AGTTAGGAAAAAACACGAACTGTTATTGATTGGTGTCAGTGTATGTGTAA
GTCCAGAGAGGTTGGCGAGTGGATTTTGGAAGACAGGGAAAATACTGAAA
GCGCAGATTGTGAGGCTAATTTACGGCTCAAAGAAAGAAAAGCATGTACA
TGTAGCA

Coding sequence (CDS) from alignment at scaffold_12:254857..256313+

>mRNA_5018 ID=mRNA_5018|Name=jgi.p|Nanoce1779_2|591126|organism=Nannochloropsis oceanica|type=CDS|length=4053bp|location=Sequence derived from alignment at scaffold_12:254857..256313+ (Nannochloropsis oceanica)
ATGGCCCTTAACGGCACGTCATCCTTGGAGGCGCGCCAAGCCTTCTTACA
GCTTCTTATGAGCCGCAAGGTCATGAACCAGAAAGAGGTGGAAGATGCGT
TCGCCATGTTGTCGGAAACGCTGAACTTGCGCGGCTACATGGCACAATCA
GAGATCAAATCGTGCCTATCCGAGTTGAACAAAGATTTGCATGAGTGCAA
TTTGCAAATCAAGGGGATGCTTCTGAACGGCACCGAGGTTTATGCCATTG
TCAACATTTTGAGCGACGAAGTGGCCAAGCTGCATGCGTCCAAGATGAAA
GACTGGGAGAAGGCTTATTTTAAGGAGGTAATAAGGACAATCTGCGAGAA
CGGCGGAGACCCTGTTGACAAGGACGAGCTGACCGCGTTGCGTGTGCAAG
TCGGGGGAACAGCGCCATATACTCGAGAGAAGGAAGCAGTGCTCTATTTG
TTGGAGGCAGAATTCTGGTTACAGAAGGATAAGCACGCCCGCCTATCATT
GGGGCCGCGGACTTTCCTTGAGCTGAGTGACTTTGTGCGGGCCCACGAGA
TGGAGATGCCTCAAATCCTCTACTTCTAAATGGCCCTTAACGGCACGTCA
TCCTTGGAGGCGCGCCAAGCCTTCTTACAGCTTCTTATGAGCCGCAAGGT
CATGAACCAGAAAGAGGTGGAAGATGCGTTCGCCATGTTGTCGGAAACGC
TGAACTTGCGCGGCTACATGGCACAATCAGAGATCAAATCGTGCCTATCC
GAGTTGAACAAAGATTTGCATGAGTGCAATTTGCAAATCAAGGGGATGCT
TCTGAACGGCACCGAGGTTTATGCCATTGTCAACATTTTGAGCGACGAAG
TGGCCAAGCTGCATGCGTCCAAGATGAAAGACTGGGAGAAGGCTTATTTT
AAGGAGGTAATAAGGACAATCTGCGAGAACGGCGGAGACCCTGTTGACAA
GGACGAGCTGACCGCGTTGCGTGTGCAAGTCGGGGGAACAGCGCCATATA
CTCGAGAGAAGGAAGCAGTGCTCTATTTGTTGGAGGCAGAATTCTGGTTA
CAGAAGGATAAGCACGCCCGCCTATCATTGGGGCCGCGGACTTTCCTTGA
GCTGAGTGACTTTGTGCGGGCCCACGAGATGGAGATGCCTCAAATCCTCT
ACTTCTAAATGGCCCTTAACGGCACGTCATCCTTGGAGGCGCGCCAAGCC
TTCTTACAGCTTCTTATGAGCCGCAAGGTCATGAACCAGAAAGAGGTGGA
AGATGCGTTCGCCATGTTGTCGGAAACGCTGAACTTGCGCGGCTACATGG
CACAATCAGAGATCAAATCGTGCCTATCCGAGTTGAACAAAGATTTGCAT
GAGTGCAATTTGCAAATCAAGGGGATGCTTCTGAACGGCACCGAGGTTTA
TGCCATTGTCAACATTTTGAGCGACGAAGTGGCCAAGCTGCATGCGTCCA
AGATGAAAGACTGGGAGAAGGCTTATTTTAAGGAGGTAATAAGGACAATC
TGCGAGAACGGCGGAGACCCTGTTGACAAGGACGAGCTGACCGCGTTGCG
TGTGCAAGTCGGGGGAACAGCGCCATATACTCGAGAGAAGGAAGCAGTGC
TCTATTTGTTGGAGGCAGAATTCTGGTTACAGAAGGATAAGCACGCCCGC
CTATCATTGGGGCCGCGGACTTTCCTTGAGCTGAGTGACTTTGTGCGGGC
CCACGAGATGGAGATGCCTCAAATCCTCTACTTCTAAATGGCCCTTAACG
GCACGTCATCCTTGGAGGCGCGCCAAGCCTTCTTACAGCTTCTTATGAGC
CGCAAGGTCATGAACCAGAAAGAGGTGGAAGATGCGTTCGCCATGTTGTC
GGAAACGCTGAACTTGCGCGGCTACATGGCACAATCAGAGATCAAATCGT
GCCTATCCGAGTTGAACAAAGATTTGCATGAGTGCAATTTGCAAATCAAG
GGGATGCTTCTGAACGGCACCGAGGTTTATGCCATTGTCAACATTTTGAG
CGACGAAGTGGCCAAGCTGCATGCGTCCAAGATGAAAGACTGGGAGAAGG
CTTATTTTAAGGAGGTAATAAGGACAATCTGCGAGAACGGCGGAGACCCT
GTTGACAAGGACGAGCTGACCGCGTTGCGTGTGCAAGTCGGGGGAACAGC
GCCATATACTCGAGAGAAGGAAGCAGTGCTCTATTTGTTGGAGGCAGAAT
TCTGGTTACAGAAGGATAAGCACGCCCGCCTATCATTGGGGCCGCGGACT
TTCCTTGAGCTGAGTGACTTTGTGCGGGCCCACGAGATGGAGATGCCTCA
AATCCTCTACTTCTAAATGGCCCTTAACGGCACGTCATCCTTGGAGGCGC
GCCAAGCCTTCTTACAGCTTCTTATGAGCCGCAAGGTCATGAACCAGAAA
GAGGTGGAAGATGCGTTCGCCATGTTGTCGGAAACGCTGAACTTGCGCGG
CTACATGGCACAATCAGAGATCAAATCGTGCCTATCCGAGTTGAACAAAG
ATTTGCATGAGTGCAATTTGCAAATCAAGGGGATGCTTCTGAACGGCACC
GAGGTTTATGCCATTGTCAACATTTTGAGCGACGAAGTGGCCAAGCTGCA
TGCGTCCAAGATGAAAGACTGGGAGAAGGCTTATTTTAAGGAGGTAATAA
GGACAATCTGCGAGAACGGCGGAGACCCTGTTGACAAGGACGAGCTGACC
GCGTTGCGTGTGCAAGTCGGGGGAACAGCGCCATATACTCGAGAGAAGGA
AGCAGTGCTCTATTTGTTGGAGGCAGAATTCTGGTTACAGAAGGATAAGC
ACGCCCGCCTATCATTGGGGCCGCGGACTTTCCTTGAGCTGAGTGACTTT
GTGCGGGCCCACGAGATGGAGATGCCTCAAATCCTCTACTTCTAAATGGC
CCTTAACGGCACGTCATCCTTGGAGGCGCGCCAAGCCTTCTTACAGCTTC
TTATGAGCCGCAAGGTCATGAACCAGAAAGAGGTGGAAGATGCGTTCGCC
ATGTTGTCGGAAACGCTGAACTTGCGCGGCTACATGGCACAATCAGAGAT
CAAATCGTGCCTATCCGAGTTGAACAAAGATTTGCATGAGTGCAATTTGC
AAATCAAGGGGATGCTTCTGAACGGCACCGAGGTTTATGCCATTGTCAAC
ATTTTGAGCGACGAAGTGGCCAAGCTGCATGCGTCCAAGATGAAAGACTG
GGAGAAGGCTTATTTTAAGGAGGTAATAAGGACAATCTGCGAGAACGGCG
GAGACCCTGTTGACAAGGACGAGCTGACCGCGTTGCGTGTGCAAGTCGGG
GGAACAGCGCCATATACTCGAGAGAAGGAAGCAGTGCTCTATTTGTTGGA
GGCAGAATTCTGGTTACAGAAGGATAAGCACGCCCGCCTATCATTGGGGC
CGCGGACTTTCCTTGAGCTGAGTGACTTTGTGCGGGCCCACGAGATGGAG
ATGCCTCAAATCCTCTACTTCTAAATGGCCCTTAACGGCACGTCATCCTT
GGAGGCGCGCCAAGCCTTCTTACAGCTTCTTATGAGCCGCAAGGTCATGA
ACCAGAAAGAGGTGGAAGATGCGTTCGCCATGTTGTCGGAAACGCTGAAC
TTGCGCGGCTACATGGCACAATCAGAGATCAAATCGTGCCTATCCGAGTT
GAACAAAGATTTGCATGAGTGCAATTTGCAAATCAAGGGGATGCTTCTGA
ACGGCACCGAGGTTTATGCCATTGTCAACATTTTGAGCGACGAAGTGGCC
AAGCTGCATGCGTCCAAGATGAAAGACTGGGAGAAGGCTTATTTTAAGGA
GGTAATAAGGACAATCTGCGAGAACGGCGGAGACCCTGTTGACAAGGACG
AGCTGACCGCGTTGCGTGTGCAAGTCGGGGGAACAGCGCCATATACTCGA
GAGAAGGAAGCAGTGCTCTATTTGTTGGAGGCAGAATTCTGGTTACAGAA
GGATAAGCACGCCCGCCTATCATTGGGGCCGCGGACTTTCCTTGAGCTGA
GTGACTTTGTGCGGGCCCACGAGATGGAGATGCCTCAAATCCTCTACTTC
TAA

Synonyms

Publications