jgi.p|Nanoce1779_2|51269, mRNA_5017 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|51269
Unique NamemRNA_5017
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1056
Alignment locationscaffold_12:253121..254583 -

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Properties
Property NameValue
TranscriptId51355
TrackFilteredModels2
ProteinId51269
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:253121..254583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|51269gene_5017Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|51269mRNA_5017-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5017CDS_5017Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5017 ID=mRNA_5017|Name=jgi.p|Nanoce1779_2|51269|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
CAGCCTTGTGTCCTGTCTGACAAGCCAACCACCGGACCATCATCACTATC
ACCACCACAGGTACAATTAGTACGACTGCATGCGAAAGAGGCTGGCGATT
CTGCGATCCCAGACACATTAACTATTTTGTCGCCTCGACCAATACCCACA
CGCCAAGCATCATCGCCAACACCCGTCGCACGCCTCAATACTCTGAGCTG
TGTGGTACTATTCTATGACCACATACCGGCAGGTATCGACGGGACAAGGA
TTAAAATATCACTGCGTTGGTTAATAGTTCCTTTCACAATGTCGGCGGCG
GCCGCCTTGCGGGCAGAGGGGCCCTTCCCACCGGACGTTCTCGTGGAGGT
GAAGAGCAACCCGGGCAATAACCAATGCTGCGACTGCGGTTCCTTCGACA
CCGAATGGGCCAGCGTCACTTACGGCGTCTTAATTTGCCTCCGCTGCTCG
GGTTTCCATCGTTCTCTAGGGGTCAGCGTAAGCTTTGTCCGCTCACTCTC
CCTTGACTCGTGGACACCGAAACAAGTGTACGCGATGCGGCTCGGTTCAA
ATTTTCAAATGCAAGAGTTTTTCCGCCGGCAACGGATCAGCAACACGGAC
ATTCGGGTCAAATATCAAAGCAAGGCGGCGAGCGTGTACAGGAGTACTCT
GTCGGAAGCAGTCGAGAAAGGGTGGGAGGTTGACTGGGAAAGCCGTAAGG
CGAGGAAAGCAGCAGGAGGAGGGGGAGGGAGCAGTAGCAGCACGAGGCGA
CAGCGGTTGAAATCGGTTTCGTTGGTCTCACCGCCAAGAAAGCATTCATC
CTTTCATGGGCTAGGGGCTGGCAGAACAGCAGCGATACCAACCAAGAGTC
TCAACCACCACTGCATCTACCATCTGCTGTAGGAAACGAAGGAGATGAAG
AGTTCGTTGAGGTTAGAGTGGAGGGCGAGGAATCCATTGGCATCTCGATC
CAGAAAGACCTTCCTACGGGGCACGCTCGTGTCTATCGCGTTACTCTTGC
TAGTCCTGCCTACCGTGCTGGTGTGCAAACAGGAGACACTTTGGTAGGGC
TGAGCA
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protein sequence of jgi.p|Nanoce1779_2|51269

>mRNA_5017-protein ID=mRNA_5017-protein|Name=jgi.p|Nanoce1779_2|51269|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MSAAAALRAEGPFPPDVLVEVKSNPGNNQCCDCGSFDTEWASVTYGVLIC
LRCSGFHRSLGVSVSFVRSLSLDSWTPKQVYAMRLGSNFQMQEFFRRQRI
SNTDIRVKYQSKAASVYRSTLSEAVEKGWEVDWESRKARKAAGGGGGSSS
STRRQRLKSVSLVSPPRKHSSFHGLGAGRTAAIPTKSLNHHCIYHLL*
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mRNA from alignment at scaffold_12:253121..254583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5017 ID=mRNA_5017|Name=jgi.p|Nanoce1779_2|51269|organism=Nannochloropsis oceanica|type=mRNA|length=1463bp|location=Sequence derived from alignment at scaffold_12:253121..254583- (Nannochloropsis oceanica)
CAGCCTTGTGTCCTGTCTGACAAGCCAACCACCGGACCATCATCACTATC
ACCACCACAGGTACAATTAGTACGACTGCATGCGAAAGAGGCTGGCGATT
CTGCGATCCCAGACACATTAACTATTTTGTCGCCTCGACCAATACCCACA
CGCCAAGCATCATCGCCAACACCCGTCGCACGCCTCAATACTCTGAGCTG
TGTGGTACTATTCTATGACCACATACCGGCAGGTATCGACGGGACAAGGA
TTAAAATATCACTGCGTTGGTTAATAGTTCCTTTCACAATGTCGGCGGCG
GCCGCCTTGCGGGCAGAGGGGCCCTTCCCACCGGACGTTCTCGTGGAGGT
GAAGAGCAACCCGGGCAATAAGTAAGTCTTGTCGGTTGTATGCGTGTACT
TGAGGCCGAGTTTGTGTATTTGTGCCTTCGAGCGACGCAGACGATCATTC
TTCGTTGTGTCTGTATGTTTATCGTAGTGTCGTTCCCGTCCATCCGGCTG
CAATCACGGCGCTCGCATGGGTCACCATGTCCGCCCTTTGACACATCGCC
AAACCCTGGGTCCGCCAGGCCATTTGTCCGTCATGCATTTCCAAGTTCTC
CAAACCATATTGAGCTCTCAATCATCCAAATTCTTCCCTTTATTATATCT
TGACCCAAATTATTCCTCCCTCTTACAGCCAATGCTGCGACTGCGGTTCC
TTCGACACCGAATGGGCCAGCGTCACTTACGGCGTCTTAATTTGCCTCCG
CTGCTCGGGTTTCCATCGTTCTCTAGGGGTCAGCGTAAGCTTTGTCCGCT
CACTCTCCCTTGACTCGTGGACACCGAAACAAGTGTACGCGATGCGGCTC
GGTTCAAATTTTCAAATGCAAGAGTTTTTCCGCCGGCAACGGATCAGCAA
CACGGACATTCGGGTCAAATATCAAAGCAAGGCGGCGAGCGTGTACAGGA
GTACTCTGTCGGAAGCAGTCGAGAAAGGGTGGGAGGTTGACTGGGAAAGC
CGTAAGGCGAGGAAAGCAGCAGGAGGAGGGGGAGGGAGCAGTAGCAGCAC
GAGGCGACAGCGGTTGAAATCGGTTTCGTTGGTCTCACCGCCAAGAAAGC
ATTCATCCTTTCATGGGCTAGGGGCTGGTAATGATGCTGAAGGAGGAGGA
GGGGAAGGAGAAGGAGATGTAGGACGAAGGAACGAAATCAGTGGTCGTCA
TCATCACCACCACAACGACCACCACAGGCAGAACAGCAGCGATACCAACC
AAGAGTCTCAACCACCACTGCATCTACCATCTGCTGTAGGAAACGAAGGA
GATGAAGAGTTCGTTGAGGTTAGAGTGGAGGGCGAGGAATCCATTGGCAT
CTCGATCCAGAAAGACCTTCCTACGGGGCACGCTCGTGTCTATCGCGTTA
CTCTTGCTAGTCCTGCCTACCGTGCTGGTGTGCAAACAGGAGACACTTTG
GTAGGGCTGAGCA
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Coding sequence (CDS) from alignment at scaffold_12:253121..254583-

>mRNA_5017 ID=mRNA_5017|Name=jgi.p|Nanoce1779_2|51269|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at scaffold_12:253121..254583- (Nannochloropsis oceanica)
GCAGAACAGCAGCGATACCAACCAAGAGTCTCAACCACCACTGCATCTAC
CATCTGCTGTAGCCAATGCTGCGACTGCGGTTCCTTCGACACCGAATGGG
CCAGCGTCACTTACGGCGTCTTAATTTGCCTCCGCTGCTCGGGTTTCCAT
CGTTCTCTAGGGGTCAGCGTAAGCTTTGTCCGCTCACTCTCCCTTGACTC
GTGGACACCGAAACAAGTGTACGCGATGCGGCTCGGTTCAAATTTTCAAA
TGCAAGAGTTTTTCCGCCGGCAACGGATCAGCAACACGGACATTCGGGTC
AAATATCAAAGCAAGGCGGCGAGCGTGTACAGGAGTACTCTGTCGGAAGC
AGTCGAGAAAGGGTGGGAGGTTGACTGGGAAAGCCGTAAGGCGAGGAAAG
CAGCAGGAGGAGGGGGAGGGAGCAGTAGCAGCACGAGGCGACAGCGGTTG
AAATCGGTTTCGTTGGTCTCACCGCCAAGAAAGCATTCATCCTTTCATGG
GCTAGGGGCTGATGTCGGCGGCGGCCGCCTTGCGGGCAGAGGGGCCCTTC
CCACCGGACGTTCTCGTGGAGGTGAAGAGCAACCCGGGCAATAAGCAGAA
CAGCAGCGATACCAACCAAGAGTCTCAACCACCACTGCATCTACCATCTG
CTGTAGCCAATGCTGCGACTGCGGTTCCTTCGACACCGAATGGGCCAGCG
TCACTTACGGCGTCTTAATTTGCCTCCGCTGCTCGGGTTTCCATCGTTCT
CTAGGGGTCAGCGTAAGCTTTGTCCGCTCACTCTCCCTTGACTCGTGGAC
ACCGAAACAAGTGTACGCGATGCGGCTCGGTTCAAATTTTCAAATGCAAG
AGTTTTTCCGCCGGCAACGGATCAGCAACACGGACATTCGGGTCAAATAT
CAAAGCAAGGCGGCGAGCGTGTACAGGAGTACTCTGTCGGAAGCAGTCGA
GAAAGGGTGGGAGGTTGACTGGGAAAGCCGTAAGGCGAGGAAAGCAGCAG
GAGGAGGGGGAGGGAGCAGTAGCAGCACGAGGCGACAGCGGTTGAAATCG
GTTTCGTTGGTCTCACCGCCAAGAAAGCATTCATCCTTTCATGGGCTAGG
GGCTGATGTCGGCGGCGGCCGCCTTGCGGGCAGAGGGGCCCTTCCCACCG
GACGTTCTCGTGGAGGTGAAGAGCAACCCGGGCAATAAGCAGAACAGCAG
CGATACCAACCAAGAGTCTCAACCACCACTGCATCTACCATCTGCTGTAG
CCAATGCTGCGACTGCGGTTCCTTCGACACCGAATGGGCCAGCGTCACTT
ACGGCGTCTTAATTTGCCTCCGCTGCTCGGGTTTCCATCGTTCTCTAGGG
GTCAGCGTAAGCTTTGTCCGCTCACTCTCCCTTGACTCGTGGACACCGAA
ACAAGTGTACGCGATGCGGCTCGGTTCAAATTTTCAAATGCAAGAGTTTT
TCCGCCGGCAACGGATCAGCAACACGGACATTCGGGTCAAATATCAAAGC
AAGGCGGCGAGCGTGTACAGGAGTACTCTGTCGGAAGCAGTCGAGAAAGG
GTGGGAGGTTGACTGGGAAAGCCGTAAGGCGAGGAAAGCAGCAGGAGGAG
GGGGAGGGAGCAGTAGCAGCACGAGGCGACAGCGGTTGAAATCGGTTTCG
TTGGTCTCACCGCCAAGAAAGCATTCATCCTTTCATGGGCTAGGGGCTGA
TGTCGGCGGCGGCCGCCTTGCGGGCAGAGGGGCCCTTCCCACCGGACGTT
CTCGTGGAGGTGAAGAGCAACCCGGGCAATAA
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Synonyms
Publications