jgi.p|Nanoce1779_2|528749, mRNA_5016 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528749
Unique NamemRNA_5016
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length225
Alignment locationscaffold_12:250158..250382 -

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Properties
Property NameValue
TranscriptId528835
TrackFilteredModels2
ProteinId528749
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:250158..250382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528749gene_5016Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5016CDS_5016Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528749mRNA_5016-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5016 ID=mRNA_5016|Name=jgi.p|Nanoce1779_2|528749|organism=Nannochloropsis oceanica|type=mRNA|length=225bp
ATGCGGTTGGAGGAAATGGCAGTGACGTCAAGGGAAAGAGGACTTATGTA
TGTCTGTCAAGTGCTGCAGGTGACGCCAGGGGGGGCCGCGGAGAAGGAAG
GGGTGGTGGATGGGTGTGTGGTGGTGGGAGTGAATGGGGAGAGATTCATT
TCGCATGCGCATACGGTAGCGACGCTGAGGTATGGAAAGAGGCCGGTAGT
GGTCCGGTTTAGAATGCCTCGGTGA
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protein sequence of jgi.p|Nanoce1779_2|528749

>mRNA_5016-protein ID=mRNA_5016-protein|Name=jgi.p|Nanoce1779_2|528749|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MRLEEMAVTSRERGLMYVCQVLQVTPGGAAEKEGVVDGCVVVGVNGERFI
SHAHTVATLRYGKRPVVVRFRMPR*
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mRNA from alignment at scaffold_12:250158..250382-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5016 ID=mRNA_5016|Name=jgi.p|Nanoce1779_2|528749|organism=Nannochloropsis oceanica|type=mRNA|length=225bp|location=Sequence derived from alignment at scaffold_12:250158..250382- (Nannochloropsis oceanica)
ATGCGGTTGGAGGAAATGGCAGTGACGTCAAGGGAAAGAGGACTTATGTA
TGTCTGTCAAGTGCTGCAGGTGACGCCAGGGGGGGCCGCGGAGAAGGAAG
GGGTGGTGGATGGGTGTGTGGTGGTGGGAGTGAATGGGGAGAGATTCATT
TCGCATGCGCATACGGTAGCGACGCTGAGGTATGGAAAGAGGCCGGTAGT
GGTCCGGTTTAGAATGCCTCGGTGA
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Coding sequence (CDS) from alignment at scaffold_12:250158..250382-

>mRNA_5016 ID=mRNA_5016|Name=jgi.p|Nanoce1779_2|528749|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_12:250158..250382- (Nannochloropsis oceanica)
ATGCGGTTGGAGGAAATGGCAGTGACGTCAAGGGAAAGAGGACTTATGTA
TGTCTGTCAAGTGCTGCAGGTGACGCCAGGGGGGGCCGCGGAGAAGGAAG
GGGTGGTGGATGGGTGTGTGGTGGTGGGAGTGAATGGGGAGAGATTCATT
TCGCATGCGCATACGGTAGCGACGCTGAGGTATGGAAAGAGGCCGGTAGT
GGTCCGGTTTAGAATGCCTCGGTGA
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Synonyms
Publications