jgi.p|Nanoce1779_2|591112, mRNA_5015 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591112
Unique Name	mRNA_5015
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1985
Alignment location	scaffold_12:248040..250024 +

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Properties


Property Name	Value
TranscriptId	591198
Track	FilteredModels2
ProteinId	591112

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:248040..250024 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591112	gene_5015	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591112	mRNA_5015-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5015	CDS_5015	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:248040..250024+
coding sequence from alignment at scaffold_12:248040..250024+

mRNA sequence

>mRNA_5015 ID=mRNA_5015|Name=jgi.p|Nanoce1779_2|591112|organism=Nannochloropsis oceanica|type=mRNA|length=1985bp
GGGGGGGGCATGGTGGCGGACACGGACATGGTGGCGGACACGGCCATGGC
GGGCACGGACACGGCCCAGGCCGAGGCCACGCGCAGCTAATGCCAGAGGA
ATTGAACTGGAAGTGCCGACTCTTCATGACTATGGAGGATCCCAGTTTCT
CGCTTACCGCTCGATTGGTATCCGCCTTTATCAACGCTTGCTTGTTCCTC
TCTATCGTGGCCTTCAGTTTGGGAACAATGTTTGAGTTCAAGCACTTTCC
TTATTACTGCCCTTCGCACATGATTGTGGGCTTCACGTGCTGGGACGGCT
TCGGCATGCCCACGAGAGTGATGCCTGTGAACGTATACGACCGCAGCACC
TACGAGGCGGGTAGGCAAATGTACAACGAGTATCTGGAGGAAAAGAAGAA
GAAGGAAGCTGCAGAAGCCGCAGCAGCCGCCGGAGTCACCCCTGCTGCTG
ATGCGGCTCCTGCAGGCCCCGGTGTTGCTCCTGCTGCCGCCGGTGCTTCC
CCCTTCGATGTCGCTCCTGCTGCCTACGCGGAGCCATCATGGATGGACGA
GGTCGCCCCAGTGACAGAGAACCCTGGTTTGTACAATTTGAGAGGCTTGG
TGCAATCTGAAGAGGAGCGGGTGCATCGACGCTTGTATCCCAAAAAGGTT
CGCCCCATTGGAGTACCCTACTGCGAAGAGATTTGTGAATACGAGCCGGA
TAAGGAGATTGAGATTGCCGAGGGTTTTGCAATGGCCACGTTTACGGTGG
ATTATTTGACGAGGCTTGCGACGGCGCATGCAGTGCCCTACCGTGTGATT
AACCCAAGCGCTAATTTGAGCTACGAGCCTGGTGGGTTGTTTAAAACTGT
TCGGTACTTCTTCACGTTCATCATGTTGGTGGACTTCTTCGCCTTGTTCC
CGTACTACTTGAAGACCATCCTCGAGCGGTTGGAGAGGGACCTTGCCTCA
TCAGCCATGATTAGGACGCTGGGCCTCATTCGAGTGACGCGCGTGCTTCC
ATTTTACATGCACATGGTGGTGTCCACCAAAGGTGTCTTCTCGCAAGGAG
ACAGCCCGCACTTCATGCGTCTCTTCGAAATGGGGGTTCTCTTCAGATTT
TTGAGGTTGGGCGACTATGCGGAGGGAGCCCCGTTGTTCTTCTCCACCTT
GAAGGCGTCTCTACCCGCGATCGGATTGGCATTGATAGCGATGCTGTGCT
TGGCCATGATGTTTGGAACAGCGATATTCTTTGCCGAGCATGGGACGTTC
AGGGTGACACCCGAATTCCCAACTGGCGCGTTTTTGACTCGAGGACGGGA
CGGCACGTTGGTGGAACCGGCGCATGCCAACATTTTTATGAGTATGTGGT
ACGTCATCAGTGACACTACACCCATGCCTACAGTCATAATGCTGGTGCCC
AAAACGACCGCCGGTGAAGTGCTGGATGTGGTGATGGACTACATGTCATT
GATTGTCTTGACACTACCCATCGCGATTTTTGCCCGAAACTTCCACGAGC
AGTACAACAAGTTCTTCAAAAATTGGGAGGAAGAAAGGGGTGATATTGAT
TGGTCTAGTGACAATGAAGAGGAAGACGAGGACGACGAGAAGGAGATGAA
GGGGGAGCAGTGGACGAAAGGGGCCGAGATGGATGATTTTGACAAGGCGA
TCGCGAAGTTGGAGGCCGCGCAGCAGGAGCAACGGGAAAAGCTGCAGCAA
ATGGAGGGGCTGAAAAGTAGGAAGGCGAGACAGAGATTTGGGTTTGAGGA
GGAGAGTAAGTTTGGAGACTTTGGAGTGTAGGATGGGGGAAGATAGGGAA
CGAGGTGCTGTCAAAATAGTGTAGTAATTTGCAGCGTGTGCGTGTGGGTG
ATAACCTGAAAAAGGTAGGACGTGGATGACGAGATTCACTGGTTGCACAG
GGAGTAAGATTTTTACGAGGCTTGAGTAAACTAGTGTGTCCATTACTCAA
AAAAGAAATAAAATAACATAAGATTGTGCGAGTGT

protein sequence of jgi.p|Nanoce1779_2|591112

>mRNA_5015-protein ID=mRNA_5015-protein|Name=jgi.p|Nanoce1779_2|591112|organism=Nannochloropsis oceanica|type=polypeptide|length=564bp
MPEELNWKCRLFMTMEDPSFSLTARLVSAFINACLFLSIVAFSLGTMFEF
KHFPYYCPSHMIVGFTCWDGFGMPTRVMPVNVYDRSTYEAGRQMYNEYLE
EKKKKEAAEAAAAAGVTPAADAAPAGPGVAPAAAGASPFDVAPAAYAEPS
WMDEVAPVTENPGLYNLRGLVQSEEERVHRRLYPKKVRPIGVPYCEEICE
YEPDKEIEIAEGFAMATFTVDYLTRLATAHAVPYRVINPSANLSYEPGGL
FKTVRYFFTFIMLVDFFALFPYYLKTILERLERDLASSAMIRTLGLIRVT
RVLPFYMHMVVSTKGVFSQGDSPHFMRLFEMGVLFRFLRLGDYAEGAPLF
FSTLKASLPAIGLALIAMLCLAMMFGTAIFFAEHGTFRVTPEFPTGAFLT
RGRDGTLVEPAHANIFMSMWYVISDTTPMPTVIMLVPKTTAGEVLDVVMD
YMSLIVLTLPIAIFARNFHEQYNKFFKNWEEERGDIDWSSDNEEEDEDDE
KEMKGEQWTKGAEMDDFDKAIAKLEAAQQEQREKLQQMEGLKSRKARQRF
GFEEESKFGDFGV*

mRNA from alignment at scaffold_12:248040..250024+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5015 ID=mRNA_5015|Name=jgi.p|Nanoce1779_2|591112|organism=Nannochloropsis oceanica|type=mRNA|length=1985bp|location=Sequence derived from alignment at scaffold_12:248040..250024+ (Nannochloropsis oceanica)
GGGGGGGGCATGGTGGCGGACACGGACATGGTGGCGGACACGGCCATGGC
GGGCACGGACACGGCCCAGGCCGAGGCCACGCGCAGCTAATGCCAGAGGA
ATTGAACTGGAAGTGCCGACTCTTCATGACTATGGAGGATCCCAGTTTCT
CGCTTACCGCTCGATTGGTATCCGCCTTTATCAACGCTTGCTTGTTCCTC
TCTATCGTGGCCTTCAGTTTGGGAACAATGTTTGAGTTCAAGCACTTTCC
TTATTACTGCCCTTCGCACATGATTGTGGGCTTCACGTGCTGGGACGGCT
TCGGCATGCCCACGAGAGTGATGCCTGTGAACGTATACGACCGCAGCACC
TACGAGGCGGGTAGGCAAATGTACAACGAGTATCTGGAGGAAAAGAAGAA
GAAGGAAGCTGCAGAAGCCGCAGCAGCCGCCGGAGTCACCCCTGCTGCTG
ATGCGGCTCCTGCAGGCCCCGGTGTTGCTCCTGCTGCCGCCGGTGCTTCC
CCCTTCGATGTCGCTCCTGCTGCCTACGCGGAGCCATCATGGATGGACGA
GGTCGCCCCAGTGACAGAGAACCCTGGTTTGTACAATTTGAGAGGCTTGG
TGCAATCTGAAGAGGAGCGGGTGCATCGACGCTTGTATCCCAAAAAGGTT
CGCCCCATTGGAGTACCCTACTGCGAAGAGATTTGTGAATACGAGCCGGA
TAAGGAGATTGAGATTGCCGAGGGTTTTGCAATGGCCACGTTTACGGTGG
ATTATTTGACGAGGCTTGCGACGGCGCATGCAGTGCCCTACCGTGTGATT
AACCCAAGCGCTAATTTGAGCTACGAGCCTGGTGGGTTGTTTAAAACTGT
TCGGTACTTCTTCACGTTCATCATGTTGGTGGACTTCTTCGCCTTGTTCC
CGTACTACTTGAAGACCATCCTCGAGCGGTTGGAGAGGGACCTTGCCTCA
TCAGCCATGATTAGGACGCTGGGCCTCATTCGAGTGACGCGCGTGCTTCC
ATTTTACATGCACATGGTGGTGTCCACCAAAGGTGTCTTCTCGCAAGGAG
ACAGCCCGCACTTCATGCGTCTCTTCGAAATGGGGGTTCTCTTCAGATTT
TTGAGGTTGGGCGACTATGCGGAGGGAGCCCCGTTGTTCTTCTCCACCTT
GAAGGCGTCTCTACCCGCGATCGGATTGGCATTGATAGCGATGCTGTGCT
TGGCCATGATGTTTGGAACAGCGATATTCTTTGCCGAGCATGGGACGTTC
AGGGTGACACCCGAATTCCCAACTGGCGCGTTTTTGACTCGAGGACGGGA
CGGCACGTTGGTGGAACCGGCGCATGCCAACATTTTTATGAGTATGTGGT
ACGTCATCAGTGACACTACACCCATGCCTACAGTCATAATGCTGGTGCCC
AAAACGACCGCCGGTGAAGTGCTGGATGTGGTGATGGACTACATGTCATT
GATTGTCTTGACACTACCCATCGCGATTTTTGCCCGAAACTTCCACGAGC
AGTACAACAAGTTCTTCAAAAATTGGGAGGAAGAAAGGGGTGATATTGAT
TGGTCTAGTGACAATGAAGAGGAAGACGAGGACGACGAGAAGGAGATGAA
GGGGGAGCAGTGGACGAAAGGGGCCGAGATGGATGATTTTGACAAGGCGA
TCGCGAAGTTGGAGGCCGCGCAGCAGGAGCAACGGGAAAAGCTGCAGCAA
ATGGAGGGGCTGAAAAGTAGGAAGGCGAGACAGAGATTTGGGTTTGAGGA
GGAGAGTAAGTTTGGAGACTTTGGAGTGTAGGATGGGGGAAGATAGGGAA
CGAGGTGCTGTCAAAATAGTGTAGTAATTTGCAGCGTGTGCGTGTGGGTG
ATAACCTGAAAAAGGTAGGACGTGGATGACGAGATTCACTGGTTGCACAG
GGAGTAAGATTTTTACGAGGCTTGAGTAAACTAGTGTGTCCATTACTCAA
AAAAGAAATAAAATAACATAAGATTGTGCGAGTGT

Coding sequence (CDS) from alignment at scaffold_12:248040..250024+

>mRNA_5015 ID=mRNA_5015|Name=jgi.p|Nanoce1779_2|591112|organism=Nannochloropsis oceanica|type=CDS|length=1692bp|location=Sequence derived from alignment at scaffold_12:248040..250024+ (Nannochloropsis oceanica)
ATGCCAGAGGAATTGAACTGGAAGTGCCGACTCTTCATGACTATGGAGGA
TCCCAGTTTCTCGCTTACCGCTCGATTGGTATCCGCCTTTATCAACGCTT
GCTTGTTCCTCTCTATCGTGGCCTTCAGTTTGGGAACAATGTTTGAGTTC
AAGCACTTTCCTTATTACTGCCCTTCGCACATGATTGTGGGCTTCACGTG
CTGGGACGGCTTCGGCATGCCCACGAGAGTGATGCCTGTGAACGTATACG
ACCGCAGCACCTACGAGGCGGGTAGGCAAATGTACAACGAGTATCTGGAG
GAAAAGAAGAAGAAGGAAGCTGCAGAAGCCGCAGCAGCCGCCGGAGTCAC
CCCTGCTGCTGATGCGGCTCCTGCAGGCCCCGGTGTTGCTCCTGCTGCCG
CCGGTGCTTCCCCCTTCGATGTCGCTCCTGCTGCCTACGCGGAGCCATCA
TGGATGGACGAGGTCGCCCCAGTGACAGAGAACCCTGGTTTGTACAATTT
GAGAGGCTTGGTGCAATCTGAAGAGGAGCGGGTGCATCGACGCTTGTATC
CCAAAAAGGTTCGCCCCATTGGAGTACCCTACTGCGAAGAGATTTGTGAA
TACGAGCCGGATAAGGAGATTGAGATTGCCGAGGGTTTTGCAATGGCCAC
GTTTACGGTGGATTATTTGACGAGGCTTGCGACGGCGCATGCAGTGCCCT
ACCGTGTGATTAACCCAAGCGCTAATTTGAGCTACGAGCCTGGTGGGTTG
TTTAAAACTGTTCGGTACTTCTTCACGTTCATCATGTTGGTGGACTTCTT
CGCCTTGTTCCCGTACTACTTGAAGACCATCCTCGAGCGGTTGGAGAGGG
ACCTTGCCTCATCAGCCATGATTAGGACGCTGGGCCTCATTCGAGTGACG
CGCGTGCTTCCATTTTACATGCACATGGTGGTGTCCACCAAAGGTGTCTT
CTCGCAAGGAGACAGCCCGCACTTCATGCGTCTCTTCGAAATGGGGGTTC
TCTTCAGATTTTTGAGGTTGGGCGACTATGCGGAGGGAGCCCCGTTGTTC
TTCTCCACCTTGAAGGCGTCTCTACCCGCGATCGGATTGGCATTGATAGC
GATGCTGTGCTTGGCCATGATGTTTGGAACAGCGATATTCTTTGCCGAGC
ATGGGACGTTCAGGGTGACACCCGAATTCCCAACTGGCGCGTTTTTGACT
CGAGGACGGGACGGCACGTTGGTGGAACCGGCGCATGCCAACATTTTTAT
GAGTATGTGGTACGTCATCAGTGACACTACACCCATGCCTACAGTCATAA
TGCTGGTGCCCAAAACGACCGCCGGTGAAGTGCTGGATGTGGTGATGGAC
TACATGTCATTGATTGTCTTGACACTACCCATCGCGATTTTTGCCCGAAA
CTTCCACGAGCAGTACAACAAGTTCTTCAAAAATTGGGAGGAAGAAAGGG
GTGATATTGATTGGTCTAGTGACAATGAAGAGGAAGACGAGGACGACGAG
AAGGAGATGAAGGGGGAGCAGTGGACGAAAGGGGCCGAGATGGATGATTT
TGACAAGGCGATCGCGAAGTTGGAGGCCGCGCAGCAGGAGCAACGGGAAA
AGCTGCAGCAAATGGAGGGGCTGAAAAGTAGGAAGGCGAGACAGAGATTT
GGGTTTGAGGAGGAGAGTAAGTTTGGAGACTTTGGAGTGTAG

Synonyms

Publications