jgi.p|Nanoce1779_2|630719, mRNA_5013 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|630719
Unique NamemRNA_5013
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length901
Alignment locationscaffold_12:242564..243688 +

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Properties
Property NameValue
TranscriptId630805
TrackFilteredModels2
ProteinId630719
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:242564..243688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630719gene_5013Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630719mRNA_5013-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5013CDS_5013Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5013 ID=mRNA_5013|Name=jgi.p|Nanoce1779_2|630719|organism=Nannochloropsis oceanica|type=mRNA|length=901bp
TTACAGGCAATCTCTTGTCTTTGGTCTTCTGGCGTTGCCTTTTTCCGGGA
GGGCTGCGAGCTCGCATCATCATCAGCAGGAAATCACTGTTCGGTGGCCT
TGCTTCTTTGTTCGGGAGGGGGTGGAGGCCTGCGCTACATAGACGCACAA
GCACTAAGCGGGCATTCTAGGTAAATATGGCGGGTTTCAATGTCGCTGCC
ACAGCGCCGTCAGCACCGCCGCGCCTGCCAGCCCTGGGCTACAACAAGAG
CGGTAATGGGAATGGTGTCGCGGGAGGGGGCAGTCCTTCTACCCTCAGGT
GCTCCGCTGCGTCGGCAGCTACGATGGCTACCGTTGCGGCGGCTCTGCAT
GCCCCCGAGTTGGTGCCTGTTAAGTCATTTGTTAGCACGGCGTTGGCCAT
GAAGCTGCGGGGTAACGGGACTAACTACGTGCATATCGTGAACACCATCA
GATCACGCGACGACATGGAAACTCTCCCCCGGCTCTTCCTATCCCTCGCC
TCATGCATTACCACCGTTACGGGCGACCCCGACAAGTTCAATGACCTACT
CTCGGCCTTGTTTAAATACGATTGGAGCGGTGGCAGCCTGTCCCGTGCCG
CCTTTGTCAACCTCCTCGCTCACCTCGTCTCGGCCAAGAGCACCTTCCTC
CACCCGACCCTTCAGATGCTGGCCCGTAGCTTGGCCGCGCCGGGGCCAGT
CTTGCCAAAGACGCAAGAGCAGCTGCAGCGGCAACAAGAGCCCCAAGGAG
AGGAGAACGATGAGAACAACGACGACACCGATGCGGCCCGCAAGGCATCT
GTCCACGAAGCACTCAGAACCGTCCTGACTCTCGTCCCTGCCGGTGTACC
AGAGCTTTATCCCGCTCTTGCCGATGCCTTTCCTCATCGACGAATCGAAG
G
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protein sequence of jgi.p|Nanoce1779_2|630719

>mRNA_5013-protein ID=mRNA_5013-protein|Name=jgi.p|Nanoce1779_2|630719|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MAGFNVAATAPSAPPRLPALGYNKSGNGNGVAGGGSPSTLRCSAASAATM
ATVAAALHAPELVPVKSFVSTALAMKLRGNGTNYVHIVNTIRSRDDMETL
PRLFLSLASCITTVTGDPDKFNDLLSALFKYDWSGGSLSRAAFVNLLAHL
VSAKSTFLHPTLQMLARSLAAPGPVLPKTQEQLQRQQEPQGEENDENNDD
TDAARKASVHEALRTVLTLVPAGVPELYPALADAFPHRRIE
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mRNA from alignment at scaffold_12:242564..243688+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5013 ID=mRNA_5013|Name=jgi.p|Nanoce1779_2|630719|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp|location=Sequence derived from alignment at scaffold_12:242564..243688+ (Nannochloropsis oceanica)
TTACAGGCAATCTCTTGTCTTTGGTCTTCTGGCGTTGCCTTTTTCCGGGA
GGGCTGCGAGCTCGCATCATCATCAGCAGGAAATCACTGTTCGGTGGCCT
TGCTTCTTTGTTCGGGAGGGGGTGGAGGCCTGCGCTACATAGACGCACAA
GCACTAAGCGGGCATTCTAGGTAAATATGGCGGGTTTCAATGTCGCTGCC
ACAGCGCCGTCAGCACCGCCGCGCCTGCCAGCCCTGGGCTACAACAAGAG
CGGTAATGGGAATGGTGTCGCGGGAGGGGGCAGTCCTTCTACCCTCAGGT
GCTCCGCTGCGTCGGCAGCTACGATGGCTACCGTTGCGGCGGCTCTGCAT
GCCCCCGAGTTGGTGCCTGTTAAGTCATTTGTTAGCACGGCGTTGGCCAT
GAAGCTGCGGGGTAACGGGACTAACTACGTGCATATCGTGAACACCATCA
GGTATAAAAATAGGGAAAATGCCGGGGGAAGGTGTGGATTATGGTGCTGT
TCCTTTACCGAGGTCGTAATAGTCGATACGTGGATAATTTTAGCCGTCTT
TTACATTAAACTGGTCTGTATCTTTTCATTGGCAGGCCCCCTTCATTTTC
AGAATGCATGTATTTCCTGGATACTGCTAACTAAGCCTCTCTTTCCTTGC
TCCATCCACTCAAACTCAAACACAGATCACGCGACGACATGGAAACTCTC
CCCCGGCTCTTCCTATCCCTCGCCTCATGCATTACCACCGTTACGGGCGA
CCCCGACAAGTTCAATGACCTACTCTCGGCCTTGTTTAAATACGATTGGA
GCGGTGGCAGCCTGTCCCGTGCCGCCTTTGTCAACCTCCTCGCTCACCTC
GTCTCGGCCAAGAGCACCTTCCTCCACCCGACCCTTCAGATGCTGGCCCG
TAGCTTGGCCGCGCCGGGGCCAGTCTTGCCAAAGACGCAAGAGCAGCTGC
AGCGGCAACAAGAGCCCCAAGGAGAGGAGAACGATGAGAACAACGACGAC
ACCGATGCGGCCCGCAAGGCATCTGTCCACGAAGCACTCAGAACCGTCCT
GACTCTCGTCCCTGCCGGTGTACCAGAGCTTTATCCCGCTCTTGCCGATG
CCTTTCCTCATCGACGAATCGAAGG
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Coding sequence (CDS) from alignment at scaffold_12:242564..243688+

>mRNA_5013 ID=mRNA_5013|Name=jgi.p|Nanoce1779_2|630719|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at scaffold_12:242564..243688+ (Nannochloropsis oceanica)
ATGGCGGGTTTCAATGTCGCTGCCACAGCGCCGTCAGCACCGCCGCGCCT
GCCAGCCCTGGGCTACAACAAGAGCGGTAATGGGAATGGTGTCGCGGGAG
GGGGCAGTCCTTCTACCCTCAGGTGCTCCGCTGCGTCGGCAGCTACGATG
GCTACCGTTGCGGCGGCTCTGCATGCCCCCGAGTTGGTGCCTGTTAAGTC
ATTTGTTAGCACGGCGTTGGCCATGAAGCTGCGGGGTAACGGGACTAACT
ACGTGCATATCGTGAACACCATCAGATCACGCGACGACATGGAAACTCTC
CCCCGGCTCTTCCTATCCCTCGCCTCATGCATTACCACCGTTACGGGCGA
CCCCGACAAGTTCAATGACCTACTCTCGGCCTTGTTTAAATACGATTGGA
GCGGTGGCAGCCTGTCCCGTGCCGCCTTTGTCAACCTCCTCGCTCACCTC
GTCTCGGCCAAGAGCACCTTCCTCCACCCGACCCTTCAGATGCTGGCCCG
TAGCTTGGCCGCGCCGGGGCCAGTCTTGCCAAAGACGCAAGAGCAGCTGC
AGCGGCAACAAGAGCCCCAAGGAGAGGAGAACGATGAGAACAACGACGAC
ACCGATGCGGCCCGCAAGGCATCTGTCCACGAAGCACTCAGAACCGTCCT
GACTCTCGTCCCTGCCGGTGTACCAGAGCTTTATCCCGCTCTTGCCGATG
CCTTTCCTCATCGACGAATCGAAATGGCGGGTTTCAATGTCGCTGCCACA
GCGCCGTCAGCACCGCCGCGCCTGCCAGCCCTGGGCTACAACAAGAGCGG
TAATGGGAATGGTGTCGCGGGAGGGGGCAGTCCTTCTACCCTCAGGTGCT
CCGCTGCGTCGGCAGCTACGATGGCTACCGTTGCGGCGGCTCTGCATGCC
CCCGAGTTGGTGCCTGTTAAGTCATTTGTTAGCACGGCGTTGGCCATGAA
GCTGCGGGGTAACGGGACTAACTACGTGCATATCGTGAACACCATCAGAT
CACGCGACGACATGGAAACTCTCCCCCGGCTCTTCCTATCCCTCGCCTCA
TGCATTACCACCGTTACGGGCGACCCCGACAAGTTCAATGACCTACTCTC
GGCCTTGTTTAAATACGATTGGAGCGGTGGCAGCCTGTCCCGTGCCGCCT
TTGTCAACCTCCTCGCTCACCTCGTCTCGGCCAAGAGCACCTTCCTCCAC
CCGACCCTTCAGATGCTGGCCCGTAGCTTGGCCGCGCCGGGGCCAGTCTT
GCCAAAGACGCAAGAGCAGCTGCAGCGGCAACAAGAGCCCCAAGGAGAGG
AGAACGATGAGAACAACGACGACACCGATGCGGCCCGCAAGGCATCTGTC
CACGAAGCACTCAGAACCGTCCTGACTCTCGTCCCTGCCGGTGTACCAGA
GCTTTATCCCGCTCTTGCCGATGCCTTTCCTCATCGACGAATCGAA
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Synonyms
Publications