jgi.p|Nanoce1779_2|542458, mRNA_5012 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|542458
Unique Name	mRNA_5012
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1818
Alignment location	scaffold_12:240351..242313 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	542544
Track	FilteredModels2
ProteinId	542458

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:240351..242313 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|542458	gene_5012	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|542458	mRNA_5012-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5012	CDS_5012	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:240351..242313-
coding sequence from alignment at scaffold_12:240351..242313-

mRNA sequence

>mRNA_5012 ID=mRNA_5012|Name=jgi.p|Nanoce1779_2|542458|organism=Nannochloropsis oceanica|type=mRNA|length=1818bp
ATGCGAATCATTACGGGCGACGATGGCGGCCTCCTCAAGTCCATCGACCT
GGAAGCCCAACGCATCGTCGTAGCCGGTCGCCAGCAGCGGGCACGGGCCA
TTCGTGCGCTGTGCTGGGCTCGAAACGGTACAATATTTGCAGCTGCGCGG
CAGGATGGTGTCATAAGCTTGTGGGAGGATGGTGTACAGGTATGCATAAT
AAATGCCGACGTAGTGGGCATGGCTTCGACAGGAGGGGAGACCATTCAGT
CCGAGGCAGAAGAACTCCTCGTCGTCGCTCACGAAGACGGCAAGGTCAAG
CTCCTCGCCCCCTTTCAATCGACAGCAGATCAGGAGAAAGACGTGTTAGT
TGCTGAATGGCAGCTTAAAGCCCCTTTAACATGCATGGCCCTAGGATCTC
CCTCGAGCGGGCTAGTGGCCGTCGGAGGAAAAGAGCGAGAGCTGGGATTG
TACGATTTGAGCACGGGAGAAATAACATGGGAAGCACGCAATGTTCCCCA
TGACAAGCTCAGCCTCCGCCAACCAGTCTGGGTCACCGCCGCACATTTTA
TTGATAGTGATGACGAGGGAAAGGCAGGGAAGATTGTGGCCATCGGCACG
GGGTACAAGCAAGTGAGAATTTATGACATAAGAGAGTCGAATCGAAGGCC
CGTGCGAATGATGGATCTCCCAGAGGGGTATCGAATCACGACATTGTGTA
GCGGGAAGAGCAGCAGCTCTCGTAGTAATGAGTTGGTGAGTGGCGATGCG
GGTGGGAATGTGTATAGATTGGATGTTGGGAAGATGGCCGTGGTGGGGAG
GATGGAGGGACCGGCAGGGTCGATACGAGGGTTGGTGCGACACTCTAGCC
CAAGTTTGCCATTTGTGGCCTTGGCGGGATTGGATAGGATGGCACGTGTG
TATGACTTGCGGAAGCCTCGGAAGGAGGCGTTCAGGTTTTACTTGAAACA
GAGATTGACGGCGGTGTTGTTTTCGAGACAGGGGAGGAGGGGGAAGAAGG
GGAAGGCAGAGGAGGAGGAGGAGGAAGCGCGGGCGGTGTTGCCGGCGGCA
GACGATGAATTGGATGCGATGGAAGATGATGTGGGCAGTTTAGACGAGGA
GGAGGGAGAGGAGGAGGAGGAAGAAATAGGGGAGCGTGGTAGTGATGACG
AAGAGACTGAGGGCGGGAAGAAAGATAGAGTTAGGGTCCAGCGGATCTAT
GAAAATGAGGAGGATGACGAGAAAGAAGAGAAAGACTACGAGGAGGAAGA
GGAGGAAGACGAGAGTGACGATGAGGAGAAGGTGACCTTTGGTCATCGGA
ATGATGGCATGAACGTGGAATTGAATATTGTGGGCGAGCTGGATGAAGGA
GACGAGGAAGACAGTCTTGGTGGTGTTCAAGAAACGAGAAAAGGAGGAAG
GAAGGCGCCAGCCAAGCGTCCACGGCGATAGAAGGGAGAGATAACATTGG
AGAAGAAAAGAAGACTGTTAAATTGCGGGCGCTCGGTAAGTGAGAATGGA
AAAATGTCCCTGATACGAGAGAGAAATAGCCGTGCCATGGAGCAGACGAA
AAAAGATATCTGGGGGAGACAACCGTTTTTAAAGACAAATAAGGGGATCT
GCGGAAGATCACCAGACTGGCTAATGCGTGGTACCACGCGGAAGCAAGAT
CGAGCAAATGTGCGAAGTTTGTTCATTTGAAGATAAAGCATTTTTTTGGC
TATTTGGTCATTGGTCATGCGATGTCATCTTGCGATTAGGCATGGGTAGG
TCGTTACTACGCGATGGTACTTGAAAGATGTGCTTGAGTTTTGAAAAATG
GAAATAGGAGAAAGTGTA

protein sequence of jgi.p|Nanoce1779_2|542458

>mRNA_5012-protein ID=mRNA_5012-protein|Name=jgi.p|Nanoce1779_2|542458|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MRIITGDDGGLLKSIDLEAQRIVVAGRQQRARAIRALCWARNGTIFAAAR
QDGVISLWEDGVQVCIINADVVGMASTGGETIQSEAEELLVVAHEDGKVK
LLAPFQSTADQEKDVLVAEWQLKAPLTCMALGSPSSGLVAVGGKERELGL
YDLSTGEITWEARNVPHDKLSLRQPVWVTAAHFIDSDDEGKAGKIVAIGT
GYKQVRIYDIRESNRRPVRMMDLPEGYRITTLCSGKSSSSRSNELVSGDA
GGNVYRLDVGKMAVVGRMEGPAGSIRGLVRHSSPSLPFVALAGLDRMARV
YDLRKPRKEAFRFYLKQRLTAVLFSRQGRRGKKGKAEEEEEEARAVLPAA
DDELDAMEDDVGSLDEEEGEEEEEEIGERGSDDEETEGGKKDRVRVQRIY
ENEEDDEKEEKDYEEEEEEDESDDEEKVTFGHRNDGMNVELNIVGELDEG
DEEDSLGGVQETRKGGRKAPAKRPRR*

mRNA from alignment at scaffold_12:240351..242313-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5012 ID=mRNA_5012|Name=jgi.p|Nanoce1779_2|542458|organism=Nannochloropsis oceanica|type=mRNA|length=1963bp|location=Sequence derived from alignment at scaffold_12:240351..242313- (Nannochloropsis oceanica)
ATGCGAATCATTACGGGCGACGATGGCGGCCTCCTCAAGTCCATCGACCT
GGAAGCCCAACGCATCGTCGTAGCCGGTCGCCAGCAGCGGGCACGGGCCA
TTCGTGCGCTGTGCTGGGCTCGAAACGGTACAATATTTGCAGCTGCGCGG
CAGGATGGTGTCATAAGCTTGTGGGAGGATGGTGTACAGGTATGTGGCAT
AGTGGTTGCCTGAGGGATTGATAATGGAAAAGCAAAAATGGGAAGATACT
TTTTATTGTATGTGCCAGACTTCTTTTCCTCATACACCACCCACTACTTC
GCTTTGAAAGATGCCTCACCTACTCAAGATATGCAAAGGCATAATAAATG
CCGACGTAGTGGGCATGGCTTCGACAGGAGGGGAGACCATTCAGTCCGAG
GCAGAAGAACTCCTCGTCGTCGCTCACGAAGACGGCAAGGTCAAGCTCCT
CGCCCCCTTTCAATCGACAGCAGATCAGGAGAAAGACGTGTTAGTTGCTG
AATGGCAGCTTAAAGCCCCTTTAACATGCATGGCCCTAGGATCTCCCTCG
AGCGGGCTAGTGGCCGTCGGAGGAAAAGAGCGAGAGCTGGGATTGTACGA
TTTGAGCACGGGAGAAATAACATGGGAAGCACGCAATGTTCCCCATGACA
AGCTCAGCCTCCGCCAACCAGTCTGGGTCACCGCCGCACATTTTATTGAT
AGTGATGACGAGGGAAAGGCAGGGAAGATTGTGGCCATCGGCACGGGGTA
CAAGCAAGTGAGAATTTATGACATAAGAGAGTCGAATCGAAGGCCCGTGC
GAATGATGGATCTCCCAGAGGGGTATCGAATCACGACATTGTGTAGCGGG
AAGAGCAGCAGCTCTCGTAGTAATGAGTTGGTGAGTGGCGATGCGGGTGG
GAATGTGTATAGATTGGATGTTGGGAAGATGGCCGTGGTGGGGAGGATGG
AGGGACCGGCAGGGTCGATACGAGGGTTGGTGCGACACTCTAGCCCAAGT
TTGCCATTTGTGGCCTTGGCGGGATTGGATAGGATGGCACGTGTGTATGA
CTTGCGGAAGCCTCGGAAGGAGGCGTTCAGGTTTTACTTGAAACAGAGAT
TGACGGCGGTGTTGTTTTCGAGACAGGGGAGGAGGGGGAAGAAGGGGAAG
GCAGAGGAGGAGGAGGAGGAAGCGCGGGCGGTGTTGCCGGCGGCAGACGA
TGAATTGGATGCGATGGAAGATGATGTGGGCAGTTTAGACGAGGAGGAGG
GAGAGGAGGAGGAGGAAGAAATAGGGGAGCGTGGTAGTGATGACGAAGAG
ACTGAGGGCGGGAAGAAAGATAGAGTTAGGGTCCAGCGGATCTATGAAAA
TGAGGAGGATGACGAGAAAGAAGAGAAAGACTACGAGGAGGAAGAGGAGG
AAGACGAGAGTGACGATGAGGAGAAGGTGACCTTTGGTCATCGGAATGAT
GGCATGAACGTGGAATTGAATATTGTGGGCGAGCTGGATGAAGGAGACGA
GGAAGACAGTCTTGGTGGTGTTCAAGAAACGAGAAAAGGAGGAAGGAAGG
CGCCAGCCAAGCGTCCACGGCGATAGAAGGGAGAGATAACATTGGAGAAG
AAAAGAAGACTGTTAAATTGCGGGCGCTCGGTAAGTGAGAATGGAAAAAT
GTCCCTGATACGAGAGAGAAATAGCCGTGCCATGGAGCAGACGAAAAAAG
ATATCTGGGGGAGACAACCGTTTTTAAAGACAAATAAGGGGATCTGCGGA
AGATCACCAGACTGGCTAATGCGTGGTACCACGCGGAAGCAAGATCGAGC
AAATGTGCGAAGTTTGTTCATTTGAAGATAAAGCATTTTTTTGGCTATTT
GGTCATTGGTCATGCGATGTCATCTTGCGATTAGGCATGGGTAGGTCGTT
ACTACGCGATGGTACTTGAAAGATGTGCTTGAGTTTTGAAAAATGGAAAT
AGGAGAAAGTGTA

Coding sequence (CDS) from alignment at scaffold_12:240351..242313-

>mRNA_5012 ID=mRNA_5012|Name=jgi.p|Nanoce1779_2|542458|organism=Nannochloropsis oceanica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_12:240351..242313- (Nannochloropsis oceanica)
GCATAATAAATGCCGACGTAGTGGGCATGGCTTCGACAGGAGGGGAGACC
ATTCAGTCCGAGGCAGAAGAACTCCTCGTCGTCGCTCACGAAGACGGCAA
GGTCAAGCTCCTCGCCCCCTTTCAATCGACAGCAGATCAGGAGAAAGACG
TGTTAGTTGCTGAATGGCAGCTTAAAGCCCCTTTAACATGCATGGCCCTA
GGATCTCCCTCGAGCGGGCTAGTGGCCGTCGGAGGAAAAGAGCGAGAGCT
GGGATTGTACGATTTGAGCACGGGAGAAATAACATGGGAAGCACGCAATG
TTCCCCATGACAAGCTCAGCCTCCGCCAACCAGTCTGGGTCACCGCCGCA
CATTTTATTGATAGTGATGACGAGGGAAAGGCAGGGAAGATTGTGGCCAT
CGGCACGGGGTACAAGCAAGTGAGAATTTATGACATAAGAGAGTCGAATC
GAAGGCCCGTGCGAATGATGGATCTCCCAGAGGGGTATCGAATCACGACA
TTGTGTAGCGGGAAGAGCAGCAGCTCTCGTAGTAATGAGTTGGTGAGTGG
CGATGCGGGTGGGAATGTGTATAGATTGGATGTTGGGAAGATGGCCGTGG
TGGGGAGGATGGAGGGACCGGCAGGGTCGATACGAGGGTTGGTGCGACAC
TCTAGCCCAAGTTTGCCATTTGTGGCCTTGGCGGGATTGGATAGGATGGC
ACGTGTGTATGACTTGCGGAAGCCTCGGAAGGAGGCGTTCAGGTTTTACT
TGAAACAGAGATTGACGGCGGTGTTGTTTTCGAGACAGGGGAGGAGGGGG
AAGAAGGGGAAGGCAGAGGAGGAGGAGGAGGAAGCGCGGGCGGTGTTGCC
GGCGGCAGACGATGAATTGGATGCGATGGAAGATGATGTGGGCAGTTTAG
ACGAGGAGGAGGGAGAGGAGGAGGAGGAAGAAATAGGGGAGCGTGGTAGT
GATGACGAAGAGACTGAGGGCGGGAAGAAAGATAGAGTTAGGGTCCAGCG
GATCTATGAAAATGAGGAGGATGACGAGAAAGAAGAGAAAGACTACGAGG
AGGAAGAGGAGGAAGACGAGAGTGACGATGAGGAGAAGGTGACCTTTGGT
CATCGGAATGATGGCATGAACGTGGAATTGAATATTGTGGGCGAGCTGGA
TGAAGGAGACGAGGAAGACAGTCTTGGTGGTGTTCAAGAAACGAGAAAAG
GAGGAAGGAAGGCGCCAGCCAAGCGTCCACGGCGATAGATGCGAATCATT
ACGGGCGACGATGGCGGCCTCCTCAAGTCCATCGACCTGGAAGCCCAACG
CATCGTCGTAGCCGGTCGCCAGCAGCGGGCACGGGCCATTCGTGCGCTGT
GCTGGGCTCGAAACGGTACAATATTTGCAGCTGCGCGGCAGGATGGTGTC
ATAAGCTTGTGGGAGGATGGTGTACAGGTATGCATAATAAATGCCGACGT
AGTGGGCATGGCTTCGACAGGAGGGGAGACCATTCAGTCCGAGGCAGAAG
AACTCCTCGTCGTCGCTCACGAAGACGGCAAGGTCAAGCTCCTCGCCCCC
TTTCAATCGACAGCAGATCAGGAGAAAGACGTGTTAGTTGCTGAATGGCA
GCTTAAAGCCCCTTTAACATGCATGGCCCTAGGATCTCCCTCGAGCGGGC
TAGTGGCCGTCGGAGGAAAAGAGCGAGAGCTGGGATTGTACGATTTGAGC
ACGGGAGAAATAACATGGGAAGCACGCAATGTTCCCCATGACAAGCTCAG
CCTCCGCCAACCAGTCTGGGTCACCGCCGCACATTTTATTGATAGTGATG
ACGAGGGAAAGGCAGGGAAGATTGTGGCCATCGGCACGGGGTACAAGCAA
GTGAGAATTTATGACATAAGAGAGTCGAATCGAAGGCCCGTGCGAATGAT
GGATCTCCCAGAGGGGTATCGAATCACGACATTGTGTAGCGGGAAGAGCA
GCAGCTCTCGTAGTAATGAGTTGGTGAGTGGCGATGCGGGTGGGAATGTG
TATAGATTGGATGTTGGGAAGATGGCCGTGGTGGGGAGGATGGAGGGACC
GGCAGGGTCGATACGAGGGTTGGTGCGACACTCTAGCCCAAGTTTGCCAT
TTGTGGCCTTGGCGGGATTGGATAGGATGGCACGTGTGTATGACTTGCGG
AAGCCTCGGAAGGAGGCGTTCAGGTTTTACTTGAAACAGAGATTGACGGC
GGTGTTGTTTTCGAGACAGGGGAGGAGGGGGAAGAAGGGGAAGGCAGAGG
AGGAGGAGGAGGAAGCGCGGGCGGTGTTGCCGGCGGCAGACGATGAATTG
GATGCGATGGAAGATGATGTGGGCAGTTTAGACGAGGAGGAGGGAGAGGA
GGAGGAGGAAGAAATAGGGGAGCGTGGTAGTGATGACGAAGAGACTGAGG
GCGGGAAGAAAGATAGAGTTAGGGTCCAGCGGATCTATGAAAATGAGGAG
GATGACGAGAAAGAAGAGAAAGACTACGAGGAGGAAGAGGAGGAAGACGA
GAGTGACGATGAGGAGAAGGTGACCTTTGGTCATCGGAATGATGGCATGA
ACGTGGAATTGAATATTGTGGGCGAGCTGGATGAAGGAGACGAGGAAGAC
AGTCTTGGTGGTGTTCAAGAAACGAGAAAAGGAGGAAGGAAGGCGCCAGC
CAAGCGTCCACGGCGATAGATGCGAATCATTACGGGCGACGATGGCGGCC
TCCTCAAGTCCATCGACCTGGAAGCCCAACGCATCGTCGTAGCCGGTCGC
CAGCAGCGGGCACGGGCCATTCGTGCGCTGTGCTGGGCTCGAAACGGTAC
AATATTTGCAGCTGCGCGGCAGGATGGTGTCATAAGCTTGTGGGAGGATG
GTGTACAGGTAT

Synonyms

Publications