jgi.p|Nanoce1779_2|591090, mRNA_5010 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591090
Unique NamemRNA_5010
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1210
Alignment locationscaffold_12:234491..236272 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591176
TrackFilteredModels2
ProteinId591090
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:234491..236272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591090gene_5010Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591090mRNA_5010-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5010CDS_5010Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5010 ID=mRNA_5010|Name=jgi.p|Nanoce1779_2|591090|organism=Nannochloropsis oceanica|type=mRNA|length=1210bp
AGCCCGCTCTCTCCGCCCTCAACAGCCACCGCCCCGTCGTCCACCGCACC
ATCATATTATCATTATCAGATGGAGAAGACGACGCTTAACCCAGCCGCTA
CCGCCAGCATGAAGCACCTGCGCACGCTCTTTGTGGACAAGTATCTGGAG
AATACAGTTAAGCACTTGTGTACCAAGGACGTACCGGAAACCTTCGGCGG
ACTCAAAGATCAACTCGACGGTCCCCTCTTTAATATTCTCATGACATTGG
TCAAGGAGAAGATGCAGGGCCTCGGACCCTTCGCCCAGAACGAATTTGAG
GAGATGTGTGCTGAGATGGGATTGGAAGACAAATTTCGACAAGTGGAGAC
CCAGGAGGCTGCGAAAGTCGCGGCCGCCCAAGCAGTGGTCACGGCGGCGG
AGAAAAAGAAGTCCGATGCGGTTGCTGCTGCACTGGCAACAGCGGCGGCG
GCGGTTAGGAGGAAAGGGGGAAACGGGCCCGCGGGGCAGGTAGGGGAGGA
GGACAGCAGTGATCGGCTAGGTGGCATGACTCCTGAGGGCTTGGCTCGAC
ATCGACGTATGGTGATAAAGCGGAAGGAGTTGACGGAGCTGCAGGGTATG
CATGAGAAGGAGGCATCGCTGTACTCAGAAGCGGAGGAAGACTTGAAGGT
GGCCAAGAATAAGATGAAGGAGGTGTATAATGACTTGGGCACCCTTGCTC
CTGAGGCGCAGAGGCTCCTGCAACGCTGTGTTGAAAACTGAAGAGTCGAT
GTCCGATGGGAGTTTACACGTGTGTTGTGGCTTGATACCAACTGGGAGGG
GAGGAGCGGGAATGGGACAAGGGGGCGCAGGCAGAGTATGTGTTTGCGAC
TTTAAAAAAAGGCAATGGACGTGTATGTGGGTTGAGGAAATACCACAAAG
TACGGAAAGGTCGACAAATGCGAAGGGACCCAGCGACGAGTGAAAAGGAA
GGCCATATCTTCCGAACATGTGTATTATCGGGACGAGGCATATTCAAAAG
AAACCCTAACCCTACATATCAACAATAACAAACGAGCAGACAACAAAAAG
CTCGCTACAATTTGCACTCTTTATAGACTCGAGGCTATCCGACTTGGATG
CACGACTTACTACCACTATACTGTACTTTTCTATGTATCCTTTTACACGC
ACTGTCATCAAGGTCACGTTTTTGACACTACTCCTTTCTCCCTCCCCCCC
CCCCCCCCCC
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protein sequence of jgi.p|Nanoce1779_2|591090

>mRNA_5010-protein ID=mRNA_5010-protein|Name=jgi.p|Nanoce1779_2|591090|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MEKTTLNPAATASMKHLRTLFVDKYLENTVKHLCTKDVPETFGGLKDQLD
GPLFNILMTLVKEKMQGLGPFAQNEFEEMCAEMGLEDKFRQVETQEAAKV
AAAQAVVTAAEKKKSDAVAAALATAAAAVRRKGGNGPAGQVGEEDSSDRL
GGMTPEGLARHRRMVIKRKELTELQGMHEKEASLYSEAEEDLKVAKNKMK
EVYNDLGTLAPEAQRLLQRCVEN*
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mRNA from alignment at scaffold_12:234491..236272+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5010 ID=mRNA_5010|Name=jgi.p|Nanoce1779_2|591090|organism=Nannochloropsis oceanica|type=mRNA|length=1782bp|location=Sequence derived from alignment at scaffold_12:234491..236272+ (Nannochloropsis oceanica)
AGCCCGCTCTCTCCGCCCTCAACAGCCACCGCCCCGTCGTCCACCGCACC
ATCATATTATCATTATCAGATGGAGAAGACGACGCTTAACCCAGCCGCTA
CCGCCAGCATGAAGCACCTGCGCACGCTCTTTGTGGACAAGTATCTGGAG
AATACAGTTAAGCACTTGTGTACCAAGGACGTACCGGTAAGTCGATGGCG
GAGGCGCGATTCGGATGGAGGTCTTGGTGTCCAGAGGGCCGAATGGGAGG
GGATAAAGAGACGTGGCAGGCGGAGGGAAGGCGTGATGCTTTGCCGTGGG
CGTGAGATTAAAAAGCCCCCACGGTTGGGATATGGCATTTTCGGGAGGGG
AATAGAAGAATTGATTGACGAGGCGGGTCCTGGGCATGAATGGGTGCGGT
GGCCTTCGAGGGTTGGTAGGAGCTCATTCCGCTTGACCCTGTACCCACGC
AGTCTCTGCGCCCGCCACGTAGTCGAAAAGAGGGGCGTCGCATGAAGCGG
TGGACTGTGTTGCATCACATCACTCCCCCATTCTCTCCCCTTGTCTGCCA
CGCACATGTCCCTGCTCCTCAACAAGCCCTCCGCAATCTCTCACCCCCCT
TCCCTTCTCGACCGTCCTTAATATCGATTTAGGAAACCTTCGGCGGACTC
AAAGATCAACTCGACGGTCCCCTCTTTAATATTCTCATGACATTGGTCAA
GGAGAAGATGCAGGGCCTCGGACCCTTCGCCCAGAACGAATTTGAGGAGA
TGTGTGCTGAGATGGGATTGGAAGACAAATTTCGACAAGTGGAGACCCAG
GAGGCTGCGAAAGTCGCGGCCGCCCAAGCAGTGGTCACGGCGGCGGAGAA
AAAGAAGTCCGATGCGGTTGCTGCTGCACTGGCAACAGCGGCGGCGGCGG
TTAGGAGGAAAGGGGGAAACGGGCCCGCGGGGCAGGTAGGGGAGGAGGAC
AGCAGTGATCGGCTAGGTGGCATGACTCCTGAGGGCTTGGCTCGACATCG
ACGTATGGTGATAAAGCGGAAGGAGTTGACGGAGCTGCAGGGTATGCATG
AGAAGGTACGTGTTAAAGATGTCAGAGATGTAGGGTATCACACACCTGGA
TTTTCGGGCATGGGGTTGACGCAACAACGTCCCTCTTGTCATCCCCATCT
ACCACCGCCCACCCTCCAACATAAATAATAGGAGGCATCGCTGTACTCAG
AAGCGGAGGAAGACTTGAAGGTGGCCAAGAATAAGATGAAGGAGGTGTAT
AATGACTTGGGCACCCTTGCTCCTGAGGCGCAGAGGCTCCTGCAACGCTG
TGTTGAAAACTGAAGAGTCGATGTCCGATGGGAGTTTACACGTGTGTTGT
GGCTTGATACCAACTGGGAGGGGAGGAGCGGGAATGGGACAAGGGGGCGC
AGGCAGAGTATGTGTTTGCGACTTTAAAAAAAGGCAATGGACGTGTATGT
GGGTTGAGGAAATACCACAAAGTACGGAAAGGTCGACAAATGCGAAGGGA
CCCAGCGACGAGTGAAAAGGAAGGCCATATCTTCCGAACATGTGTATTAT
CGGGACGAGGCATATTCAAAAGAAACCCTAACCCTACATATCAACAATAA
CAAACGAGCAGACAACAAAAAGCTCGCTACAATTTGCACTCTTTATAGAC
TCGAGGCTATCCGACTTGGATGCACGACTTACTACCACTATACTGTACTT
TTCTATGTATCCTTTTACACGCACTGTCATCAAGGTCACGTTTTTGACAC
TACTCCTTTCTCCCTCCCCCCCCCCCCCCCCC
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Coding sequence (CDS) from alignment at scaffold_12:234491..236272+

>mRNA_5010 ID=mRNA_5010|Name=jgi.p|Nanoce1779_2|591090|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_12:234491..236272+ (Nannochloropsis oceanica)
ATGGAGAAGACGACGCTTAACCCAGCCGCTACCGCCAGCATGAAGCACCT
GCGCACGCTCTTTGTGGACAAGTATCTGGAGAATACAGTTAAGCACTTGT
GTACCAAGGACGTACCGGAAACCTTCGGCGGACTCAAAGATCAACTCGAC
GGTCCCCTCTTTAATATTCTCATGACATTGGTCAAGGAGAAGATGCAGGG
CCTCGGACCCTTCGCCCAGAACGAATTTGAGGAGATGTGTGCTGAGATGG
GATTGGAAGACAAATTTCGACAAGTGGAGACCCAGGAGGCTGCGAAAGTC
GCGGCCGCCCAAGCAGTGGTCACGGCGGCGGAGAAAAAGAAGTCCGATGC
GGTTGCTGCTGCACTGGCAACAGCGGCGGCGGCGGTTAGGAGGAAAGGGG
GAAACGGGCCCGCGGGGCAGGTAGGGGAGGAGGACAGCAGTGATCGGCTA
GGTGGCATGACTCCTGAGGGCTTGGCTCGACATCGACGTATGGTGATAAA
GCGGAAGGAGTTGACGGAGCTGCAGGGTATGCATGAGAAGGAGGCATCGC
TGTACTCAGAAGCGGAGGAAGACTTGAAGGTGGCCAAGAATAAGATGAAG
GAGGTGTATAATGACTTGGGCACCCTTGCTCCTGAGGCGCAGAGGCTCCT
GCAACGCTGTGTTGAAAACTGAATGGAGAAGACGACGCTTAACCCAGCCG
CTACCGCCAGCATGAAGCACCTGCGCACGCTCTTTGTGGACAAGTATCTG
GAGAATACAGTTAAGCACTTGTGTACCAAGGACGTACCGGAAACCTTCGG
CGGACTCAAAGATCAACTCGACGGTCCCCTCTTTAATATTCTCATGACAT
TGGTCAAGGAGAAGATGCAGGGCCTCGGACCCTTCGCCCAGAACGAATTT
GAGGAGATGTGTGCTGAGATGGGATTGGAAGACAAATTTCGACAAGTGGA
GACCCAGGAGGCTGCGAAAGTCGCGGCCGCCCAAGCAGTGGTCACGGCGG
CGGAGAAAAAGAAGTCCGATGCGGTTGCTGCTGCACTGGCAACAGCGGCG
GCGGCGGTTAGGAGGAAAGGGGGAAACGGGCCCGCGGGGCAGGTAGGGGA
GGAGGACAGCAGTGATCGGCTAGGTGGCATGACTCCTGAGGGCTTGGCTC
GACATCGACGTATGGTGATAAAGCGGAAGGAGTTGACGGAGCTGCAGGGT
ATGCATGAGAAGGAGGCATCGCTGTACTCAGAAGCGGAGGAAGACTTGAA
GGTGGCCAAGAATAAGATGAAGGAGGTGTATAATGACTTGGGCACCCTTG
CTCCTGAGGCGCAGAGGCTCCTGCAACGCTGTGTTGAAAACTGAATGGAG
AAGACGACGCTTAACCCAGCCGCTACCGCCAGCATGAAGCACCTGCGCAC
GCTCTTTGTGGACAAGTATCTGGAGAATACAGTTAAGCACTTGTGTACCA
AGGACGTACCGGAAACCTTCGGCGGACTCAAAGATCAACTCGACGGTCCC
CTCTTTAATATTCTCATGACATTGGTCAAGGAGAAGATGCAGGGCCTCGG
ACCCTTCGCCCAGAACGAATTTGAGGAGATGTGTGCTGAGATGGGATTGG
AAGACAAATTTCGACAAGTGGAGACCCAGGAGGCTGCGAAAGTCGCGGCC
GCCCAAGCAGTGGTCACGGCGGCGGAGAAAAAGAAGTCCGATGCGGTTGC
TGCTGCACTGGCAACAGCGGCGGCGGCGGTTAGGAGGAAAGGGGGAAACG
GGCCCGCGGGGCAGGTAGGGGAGGAGGACAGCAGTGATCGGCTAGGTGGC
ATGACTCCTGAGGGCTTGGCTCGACATCGACGTATGGTGATAAAGCGGAA
GGAGTTGACGGAGCTGCAGGGTATGCATGAGAAGGAGGCATCGCTGTACT
CAGAAGCGGAGGAAGACTTGAAGGTGGCCAAGAATAAGATGAAGGAGGTG
TATAATGACTTGGGCACCCTTGCTCCTGAGGCGCAGAGGCTCCTGCAACG
CTGTGTTGAAAACTGA
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Synonyms
Publications