jgi.p|Nanoce1779_2|591078, mRNA_5007 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591078
Unique Name	mRNA_5007
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1901
Alignment location	scaffold_12:224465..226457 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591164
Track	FilteredModels2
ProteinId	591078

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:224465..226457 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591078	gene_5007	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591078	mRNA_5007-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5007	CDS_5007	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:224465..226457+
coding sequence from alignment at scaffold_12:224465..226457+

mRNA sequence

>mRNA_5007 ID=mRNA_5007|Name=jgi.p|Nanoce1779_2|591078|organism=Nannochloropsis oceanica|type=mRNA|length=1901bp
ACGACAGCGCAGGGCCTTGAGACATGGAGGAAGGGTCTGAAACCAAGAGG
GTGGGCGGCGCCGACGAAGGTGCCCTCGTGTCCGTTCCCCAAAGTTCAGA
GGCACTTGCCCTGACTTGTGCTCCTGCGCCGGGACGGACAAGCCACCTCG
CGGCCTCAACCATGCTCTTGACTGGCCACGCCGCTGCCGTCTACTGCTTG
CAATTCAATCCAACGGGAGATGCCTTGGCTTCTGGCTCGTTTGATAAGAG
CATTTTGTTATGGGACATCTACGGCGAGGAATGCAAGAACTACAATGTAT
TGACCGGCCATACCAACGCTGTGTTGGACCTCAAGTGGTCACGCGACAGT
ACCATGATCGCCTCAGCCTCCGCGGACAAGACCCTCATGATCTGGGACAC
CAACAAGGGCACGCGCCTCCGCAAATGCACCGAACACACGAGCTGCGTCA
ACAGCGTGGCAGCAGCGGGAGGCAAGGCTTCGACGGGCTCGGTTGCCACT
CTGTTTGCAACTGCCAGCGATGACAAAACGGTGAAGCTCTGGGACACGCG
CAGCAGGCGGGCGGTCGAGACGATGGAGCATCGGTTTCAACTGCTGGCCG
TGGCGCTATCGGCAGATGGGAAGAAGGTGTACGCAGGAGGACTTGACAAT
AACATCCTCATGTGGGACTTAAGCAAAGGTGGGGAGGAACCGGCGGATGT
ATACGAGGGGCATTCCGAGACAGTGACGGGCTTGAGCCTCAGCCCCGACG
GGAAGTACCTGCTCTCGAACGCCATGGACAATACGCTTCGACAATGGGAT
GTACGGCCATTCGTGACGGGCGCACGGCAGGTACAGGTGTTTCAAGGGGC
CATGCACGGTTCGGACCGCAACCTCTTGCGGTGTGCCTGGTCATACGATG
GAGAGATGGTGTCGGCAGGTTCGGTGGACCGCGCGGTGCACGTGTGGGAT
GTGCCGTCGGGGCAGGAGCTGTATTACTTGCCCGGGCACAAGGGCACGGT
TAACGAGGTGGTGTTCCATCCTAACGAACCCGTGATTGCATCGGCCTCGT
CAGATAAAACCTGCTTCCTGGGGGAGCTGGCTGGGTAGGGTTATGGGATA
GATAAAGATGCGACACGTGAAAAAAAGTGAAAACTTAATCTGAAAGTAAG
TGATTGTCTCGGATGTTGTATGTAATACTCATGCACGTCTTGAATTTTGT
GCGTTGGTCACATCATGTTGTGCCTTCTAATTCGTCAGTCAAATTGAGTG
GTCTATTTTCTAGCCTCGTCCATCTGCTGCACCACCCTCCTCAATTCCCT
TGGCCTTCAGTCACCAAGAAAAGAGATGTGTCCGTCACTGCTGCAGCAGC
AGCTCCGTCTGCCGGAGGATCACTTCCCATAGACCGAAGCTCATCTCTAA
ACACACCTCGAAGGTGCACTAACGTCGCACGTACATTAAGCACTCCTCCG
CAATGCGCATCAAAAGAAGACAACAACGCTTGTTGTTGCTCCTGAGGGAG
ATGCGTCTCTCCAACTGCAGCCACCGCCATTCCAGAAGGAGGCTTACTTC
TGCTTTCTTTTCGAGCTGGATTTCTTCCCTCCAGAGCGATGTCAAAATCG
GCCTTCTCAAGCCCGTGCAAATACTCATACAATCTAACCTTCAGGTCTAA
ACTATCGCAGCGCACGGCAATCTTACACAGTGCCTGCAGGGCCATAGGCC
TGGTAAAGCAATCAGAAAAAAGACCTAGTGTCTGGAGGCGAAAGACAATC
ACGCCCAGGCGGTCAGAAGGAAAGTGAAAAGCGTGCTCCCCCAAGAACCA
ACAGGCGAGACGCACCATACGAATACAGGCAGCACGTCGGTAAGCGAACG
TAGGTGCCTTTGGCTGACCTTGTGCCTGCCACACGTGGAGGTGACGGACG
A

protein sequence of jgi.p|Nanoce1779_2|591078

>mRNA_5007-protein ID=mRNA_5007-protein|Name=jgi.p|Nanoce1779_2|591078|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MEEGSETKRVGGADEGALVSVPQSSEALALTCAPAPGRTSHLAASTMLLT
GHAAAVYCLQFNPTGDALASGSFDKSILLWDIYGEECKNYNVLTGHTNAV
LDLKWSRDSTMIASASADKTLMIWDTNKGTRLRKCTEHTSCVNSVAAAGG
KASTGSVATLFATASDDKTVKLWDTRSRRAVETMEHRFQLLAVALSADGK
KVYAGGLDNNILMWDLSKGGEEPADVYEGHSETVTGLSLSPDGKYLLSNA
MDNTLRQWDVRPFVTGARQVQVFQGAMHGSDRNLLRCAWSYDGEMVSAGS
VDRAVHVWDVPSGQELYYLPGHKGTVNEVVFHPNEPVIASASSDKTCFLG
ELAG*

mRNA from alignment at scaffold_12:224465..226457+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5007 ID=mRNA_5007|Name=jgi.p|Nanoce1779_2|591078|organism=Nannochloropsis oceanica|type=mRNA|length=1993bp|location=Sequence derived from alignment at scaffold_12:224465..226457+ (Nannochloropsis oceanica)
ACGACAGCGCAGGGCCTTGAGACATGGAGGAAGGGTCTGAAACCAAGAGG
GTGGGCGGCGCCGACGAAGGTGCCCTCGTGTCCGTTCCCCAAAGTTCAGA
GGCACTTGCCCTGACTTGTGCTCCTGCGCCGGGACGGACAAGCCACCTCG
CGGCCTCAACCATGCTCTTGACTGGCCACGCCGCTGCCGTCTACTGCTTG
CAATTCAATCCAACGGGAGATGCCTTGGCTTCTGGCTCGTTTGATAAGAG
CATTTTGTTATGGGACATCTACGGCGAGGTAAATCTATATACGTCTGTTC
CTTCTCACATTAATACTCCTACTACGCTCGCTATCGGCTTTGCCTCATTC
TTCCCAAACCAATTGCATAGGAATGCAAGAACTACAATGTATTGACCGGC
CATACCAACGCTGTGTTGGACCTCAAGTGGTCACGCGACAGTACCATGAT
CGCCTCAGCCTCCGCGGACAAGACCCTCATGATCTGGGACACCAACAAGG
GCACGCGCCTCCGCAAATGCACCGAACACACGAGCTGCGTCAACAGCGTG
GCAGCAGCGGGAGGCAAGGCTTCGACGGGCTCGGTTGCCACTCTGTTTGC
AACTGCCAGCGATGACAAAACGGTGAAGCTCTGGGACACGCGCAGCAGGC
GGGCGGTCGAGACGATGGAGCATCGGTTTCAACTGCTGGCCGTGGCGCTA
TCGGCAGATGGGAAGAAGGTGTACGCAGGAGGACTTGACAATAACATCCT
CATGTGGGACTTAAGCAAAGGTGGGGAGGAACCGGCGGATGTATACGAGG
GGCATTCCGAGACAGTGACGGGCTTGAGCCTCAGCCCCGACGGGAAGTAC
CTGCTCTCGAACGCCATGGACAATACGCTTCGACAATGGGATGTACGGCC
ATTCGTGACGGGCGCACGGCAGGTACAGGTGTTTCAAGGGGCCATGCACG
GTTCGGACCGCAACCTCTTGCGGTGTGCCTGGTCATACGATGGAGAGATG
GTGTCGGCAGGTTCGGTGGACCGCGCGGTGCACGTGTGGGATGTGCCGTC
GGGGCAGGAGCTGTATTACTTGCCCGGGCACAAGGGCACGGTTAACGAGG
TGGTGTTCCATCCTAACGAACCCGTGATTGCATCGGCCTCGTCAGATAAA
ACCTGCTTCCTGGGGGAGCTGGCTGGGTAGGGTTATGGGATAGATAAAGA
TGCGACACGTGAAAAAAAGTGAAAACTTAATCTGAAAGTAAGTGATTGTC
TCGGATGTTGTATGTAATACTCATGCACGTCTTGAATTTTGTGCGTTGGT
CACATCATGTTGTGCCTTCTAATTCGTCAGTCAAATTGAGTGGTCTATTT
TCTAGCCTCGTCCATCTGCTGCACCACCCTCCTCAATTCCCTTGGCCTTC
AGTCACCAAGAAAAGAGATGTGTCCGTCACTGCTGCAGCAGCAGCTCCGT
CTGCCGGAGGATCACTTCCCATAGACCGAAGCTCATCTCTAAACACACCT
CGAAGGTGCACTAACGTCGCACGTACATTAAGCACTCCTCCGCAATGCGC
ATCAAAAGAAGACAACAACGCTTGTTGTTGCTCCTGAGGGAGATGCGTCT
CTCCAACTGCAGCCACCGCCATTCCAGAAGGAGGCTTACTTCTGCTTTCT
TTTCGAGCTGGATTTCTTCCCTCCAGAGCGATGTCAAAATCGGCCTTCTC
AAGCCCGTGCAAATACTCATACAATCTAACCTTCAGGTCTAAACTATCGC
AGCGCACGGCAATCTTACACAGTGCCTGCAGGGCCATAGGCCTGGTAAAG
CAATCAGAAAAAAGACCTAGTGTCTGGAGGCGAAAGACAATCACGCCCAG
GCGGTCAGAAGGAAAGTGAAAAGCGTGCTCCCCCAAGAACCAACAGGCGA
GACGCACCATACGAATACAGGCAGCACGTCGGTAAGCGAACGTAGGTGCC
TTTGGCTGACCTTGTGCCTGCCACACGTGGAGGTGACGGACGA

Coding sequence (CDS) from alignment at scaffold_12:224465..226457+

>mRNA_5007 ID=mRNA_5007|Name=jgi.p|Nanoce1779_2|591078|organism=Nannochloropsis oceanica|type=CDS|length=2130bp|location=Sequence derived from alignment at scaffold_12:224465..226457+ (Nannochloropsis oceanica)
ATGGAGGAAGGGTCTGAAACCAAGAGGGTGGGCGGCGCCGACGAAGGTGC
CCTCGTGTCCGTTCCCCAAAGTTCAGAGGCACTTGCCCTGACTTGTGCTC
CTGCGCCGGGACGGACAAGCCACCTCGCGGCCTCAACCATGCTCTTGACT
GGCCACGCCGCTGCCGTCTACTGCTTGCAATTCAATCCAACGGGAGATGC
CTTGGCTTCTGGCTCGTTTGATAAGAGCATTTTGTTATGGGACATCTACG
GCGAGGAATGCAAGAACTACAATGTATTGACCGGCCATACCAACGCTGTG
TTGGACCTCAAGTGGTCACGCGACAGTACCATGATCGCCTCAGCCTCCGC
GGACAAGACCCTCATGATCTGGGACACCAACAAGGGCACGCGCCTCCGCA
AATGCACCGAACACACGAGCTGCGTCAACAGCGTGGCAGCAGCGGGAGGC
AAGGCTTCGACGGGCTCGGTTGCCACTCTGTTTGCAACTGCCAGCGATGA
CAAAACGGTGAAGCTCTGGGACACGCGCAGCAGGCGGGCGGTCGAGACGA
TGGAGCATCGGTTTCAACTGCTGGCCGTGGCGCTATCGGCAGATGGGAAG
AAGGTGTACGCAGGAGGACTTGACAATAACATCCTCATGTGGGACTTAAG
CAAAGGTGGGGAGGAACCGGCGGATGTATACGAGGGGCATTCCGAGACAG
TGACGGGCTTGAGCCTCAGCCCCGACGGGAAGTACCTGCTCTCGAACGCC
ATGGACAATACGCTTCGACAATGGGATGTACGGCCATTCGTGACGGGCGC
ACGGCAGGTACAGGTGTTTCAAGGGGCCATGCACGGTTCGGACCGCAACC
TCTTGCGGTGTGCCTGGTCATACGATGGAGAGATGGTGTCGGCAGGTTCG
GTGGACCGCGCGGTGCACGTGTGGGATGTGCCGTCGGGGCAGGAGCTGTA
TTACTTGCCCGGGCACAAGGGCACGGTTAACGAGGTGGTGTTCCATCCTA
ACGAACCCGTGATTGCATCGGCCTCGTCAGATAAAACCTGCTTCCTGGGG
GAGCTGGCTGGGTAGATGGAGGAAGGGTCTGAAACCAAGAGGGTGGGCGG
CGCCGACGAAGGTGCCCTCGTGTCCGTTCCCCAAAGTTCAGAGGCACTTG
CCCTGACTTGTGCTCCTGCGCCGGGACGGACAAGCCACCTCGCGGCCTCA
ACCATGCTCTTGACTGGCCACGCCGCTGCCGTCTACTGCTTGCAATTCAA
TCCAACGGGAGATGCCTTGGCTTCTGGCTCGTTTGATAAGAGCATTTTGT
TATGGGACATCTACGGCGAGGAATGCAAGAACTACAATGTATTGACCGGC
CATACCAACGCTGTGTTGGACCTCAAGTGGTCACGCGACAGTACCATGAT
CGCCTCAGCCTCCGCGGACAAGACCCTCATGATCTGGGACACCAACAAGG
GCACGCGCCTCCGCAAATGCACCGAACACACGAGCTGCGTCAACAGCGTG
GCAGCAGCGGGAGGCAAGGCTTCGACGGGCTCGGTTGCCACTCTGTTTGC
AACTGCCAGCGATGACAAAACGGTGAAGCTCTGGGACACGCGCAGCAGGC
GGGCGGTCGAGACGATGGAGCATCGGTTTCAACTGCTGGCCGTGGCGCTA
TCGGCAGATGGGAAGAAGGTGTACGCAGGAGGACTTGACAATAACATCCT
CATGTGGGACTTAAGCAAAGGTGGGGAGGAACCGGCGGATGTATACGAGG
GGCATTCCGAGACAGTGACGGGCTTGAGCCTCAGCCCCGACGGGAAGTAC
CTGCTCTCGAACGCCATGGACAATACGCTTCGACAATGGGATGTACGGCC
ATTCGTGACGGGCGCACGGCAGGTACAGGTGTTTCAAGGGGCCATGCACG
GTTCGGACCGCAACCTCTTGCGGTGTGCCTGGTCATACGATGGAGAGATG
GTGTCGGCAGGTTCGGTGGACCGCGCGGTGCACGTGTGGGATGTGCCGTC
GGGGCAGGAGCTGTATTACTTGCCCGGGCACAAGGGCACGGTTAACGAGG
TGGTGTTCCATCCTAACGAACCCGTGATTGCATCGGCCTCGTCAGATAAA
ACCTGCTTCCTGGGGGAGCTGGCTGGGTAG

Synonyms

Publications