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Properties
| Property Name | Value |
|---|
| TranscriptId | 591158 |
| Track | FilteredModels2 |
| ProteinId | 591072 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:222863..224158 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5006 ID=mRNA_5006|Name=jgi.p|Nanoce1779_2|591072|organism=Nannochloropsis oceanica|type=mRNA|length=1132bp
CACCGATACCTTTACTGATCACCGCGGTGCCACTGACGAGTCTAACCCTT
ATCGTCTGGATTATTAGTGTCGTCGCTTTAAGACAGCAGTTACCCCCCTC
AACCACTCCTCCAAAGCTGTCTGTCCCCACGCCCTACCTCGTCTACGTAA
CTCCGGCCATTCCTGCAGGGGCGGAGGAGCAGAAGGCTTGGTTCGAGAAG
GTAATTTTAGCGAAATGTGGGCTAACAAGCCTTGAATCTTCCTCACTCTT
CCCCCTCGACAACTCCACATAAGGTTCAGCAATGCGCCCAGGCCGGAGTG
CCATTAGTGCAAATCCGCGACAAGGTTTTGTCTGCAGAGGTAAGAAATGG
AATTCAAGGTGAATTTGCCTCTGACATCTGCACATACTCTGTTCATTACC
TCCTTTCTCTCCACCCATTCCACTCAAGGCCCTGGCACCCCATGTGACGC
GATGCCGGGAGCAACTTGATGCTGCCGCAGCCCACTACTGGCAGCCGCAA
CAGCAGCATACGCACCCCAAAACCCTTCTTATTATCAATGGTCATCCTGA
AATGCATATAGGGTTGGATGGAGTCCATTTCCCTGAGGACAGTCTGGAGC
GCGTATCCATGGTGCTTTTTAGAGAGCAAAAGCGGCAGGAGGAGAAGGAG
GAGGAGGAAGAAGAAAAGCAGCGGCAGCAGCTAGCCTTTGTGACGGGCGT
GTCGGTGCATAGCGTGGAAGCAGCTGTCAAGGCCGCACAGATGGGGGTCG
ACTACTTGCAGGTGGGCACCATGTACCTGACGGGGAGCCACCCCGAAAAG
CTGGAGGTGGAAGGCACGGCCTTAATGACGGCCATAGACACGGCGCTCCG
CGAAGCCCAGCTTCGGGACCGCGTTCTTATCTGTGGTATTGGGGGCATCA
CCCCCGCCAATTGTGAGGCTGTGCTACGGGCAGGTGCAGATGGAGTGGCG
GTCATCAGTGGCATTGCAGCGGTGGACAATGATGTGCCCCGTACCGTGGC
TGCGTTTCGCGAGGTGTTTGCGAGGCTAGATACGGCATCAAAAAACAGAG
GAGATGCATGTCTATAGGGTCAGAGAATGTATTAAACGAAATTCAAAAAA
TCAAAATCAATTAAAAAAAAAAAAGTGCTTTC back to topprotein sequence of jgi.p|Nanoce1779_2|591072 >mRNA_5006-protein ID=mRNA_5006-protein|Name=jgi.p|Nanoce1779_2|591072|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MHIGLDGVHFPEDSLERVSMVLFREQKRQEEKEEEEEEKQRQQLAFVTGV
SVHSVEAAVKAAQMGVDYLQVGTMYLTGSHPEKLEVEGTALMTAIDTALR
EAQLRDRVLICGIGGITPANCEAVLRAGADGVAVISGIAAVDNDVPRTVA
AFREVFARLDTASKNRGDACL* back to topmRNA from alignment at scaffold_12:222863..224158+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5006 ID=mRNA_5006|Name=jgi.p|Nanoce1779_2|591072|organism=Nannochloropsis oceanica|type=mRNA|length=1296bp|location=Sequence derived from alignment at scaffold_12:222863..224158+ (Nannochloropsis oceanica)
CACCGATACCTTTACTGATCACCGCGGTGCCACTGACGAGTCTAACCCTT
ATCGTCTGGATTATTAGTGTCGTCGCTTTAAGACAGCAGTTACCCCCCTC
AACCACTCCTCCAAAGCTGTCTGTCCCCACGCCCTACCTCGTCTACGTAA
CTCCGGCCATTCCTGCAGGGGCGGAGGAGCAGAAGGCTTGGTTCGAGAAG
GTAATTTTAGCGAAATGTGGGCTAACAAGCCTTGAATCTTCCTCACTCTT
CCCCCTCGACAACTCCACATAAGGTTCAGCAATGCGCCCAGGCCGGAGTG
CCATTAGTGCAAATCCGCGACAAGGTTTTGTCTGCAGAGGTAAGAAATGG
AATTCAAGGTGAATTTGCCTCTGACATCTGCACATACTCTGTTCATTACC
TCCTTTCTCTCCACCCATTCCACTCAAGGCCCTGGCACCCCATGTGACGC
GATGCCGGGAGCAACTTGATGCTGCCGCAGCCCACTACTGGCAGCCGCAA
CAGCAGCATACGCACCCCAAAACCCTTCTTATTATCAATGGTCATCCTGA
AATGCATATAGGGTTGGATGGAGTCCATTTCCCTGAGGACAGTCTGGAGC
GCGTATCCATGGTGCTTTTTAGAGAGCAAAAGCGGCAGGAGGAGAAGGAG
GAGGAGGAAGAAGAAAAGCAGCGGCAGCAGCTAGCCTTTGTGACGGGCGT
GTCGGTGCATAGCGTGGTGTGTATCCGAGAAGCGGTGGCATACGTTTACG
TTCTCTATACCTGACGATGTCGTTTCATGCATACATATAGGAAGCAGCTG
TCAAGGCCGCACAGATGGGGGTCGACTACTTGCAGGTTCGCTGCGAAAGA
AGGGAAAATTAGACCGTCCCCGCCGCCGATAAGATGTCTTACTTTATCTC
CAACTACATGCATACATGCATTCAGGTGGGCACCATGTACCTGACGGGGA
GCCACCCCGAAAAGCTGGAGGTGGAAGGCACGGCCTTAATGACGGCCATA
GACACGGCGCTCCGCGAAGCCCAGCTTCGGGACCGCGTTCTTATCTGTGG
TATTGGGGGCATCACCCCCGCCAATTGTGAGGCTGTGCTACGGGCAGGTG
CAGATGGAGTGGCGGTCATCAGTGGCATTGCAGCGGTGGACAATGATGTG
CCCCGTACCGTGGCTGCGTTTCGCGAGGTGTTTGCGAGGCTAGATACGGC
ATCAAAAAACAGAGGAGATGCATGTCTATAGGGTCAGAGAATGTATTAAA
CGAAATTCAAAAAATCAAAATCAATTAAAAAAAAAAAAGTGCTTTC back to topCoding sequence (CDS) from alignment at scaffold_12:222863..224158+ >mRNA_5006 ID=mRNA_5006|Name=jgi.p|Nanoce1779_2|591072|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at scaffold_12:222863..224158+ (Nannochloropsis oceanica)
ATGCATATAGGGTTGGATGGAGTCCATTTCCCTGAGGACAGTCTGGAGCG
CGTATCCATGGTGCTTTTTAGAGAGCAAAAGCGGCAGGAGGAGAAGGAGG
AGGAGGAAGAAGAAAAGCAGCGGCAGCAGCTAGCCTTTGTGACGGGCGTG
TCGGTGCATAGCGTGGAAGCAGCTGTCAAGGCCGCACAGATGGGGGTCGA
CTACTTGCAGGTGGGCACCATGTACCTGACGGGGAGCCACCCCGAAAAGC
TGGAGGTGGAAGGCACGGCCTTAATGACGGCCATAGACACGGCGCTCCGC
GAAGCCCAGCTTCGGGACCGCGTTCTTATCTGTGGTATTGGGGGCATCAC
CCCCGCCAATTGTGAGGCTGTGCTACGGGCAGGTGCAGATGGAGTGGCGG
TCATCAGTGGCATTGCAGCGGTGGACAATGATGTGCCCCGTACCGTGGCT
GCGTTTCGCGAGGTGTTTGCGAGGCTAGATACGGCATCAAAAAACAGAGG
AGATGCATGTCTATAGATGCATATAGGGTTGGATGGAGTCCATTTCCCTG
AGGACAGTCTGGAGCGCGTATCCATGGTGCTTTTTAGAGAGCAAAAGCGG
CAGGAGGAGAAGGAGGAGGAGGAAGAAGAAAAGCAGCGGCAGCAGCTAGC
CTTTGTGACGGGCGTGTCGGTGCATAGCGTGGAAGCAGCTGTCAAGGCCG
CACAGATGGGGGTCGACTACTTGCAGGTGGGCACCATGTACCTGACGGGG
AGCCACCCCGAAAAGCTGGAGGTGGAAGGCACGGCCTTAATGACGGCCAT
AGACACGGCGCTCCGCGAAGCCCAGCTTCGGGACCGCGTTCTTATCTGTG
GTATTGGGGGCATCACCCCCGCCAATTGTGAGGCTGTGCTACGGGCAGGT
GCAGATGGAGTGGCGGTCATCAGTGGCATTGCAGCGGTGGACAATGATGT
GCCCCGTACCGTGGCTGCGTTTCGCGAGGTGTTTGCGAGGCTAGATACGG
CATCAAAAAACAGAGGAGATGCATGTCTATAGATGCATATAGGGTTGGAT
GGAGTCCATTTCCCTGAGGACAGTCTGGAGCGCGTATCCATGGTGCTTTT
TAGAGAGCAAAAGCGGCAGGAGGAGAAGGAGGAGGAGGAAGAAGAAAAGC
AGCGGCAGCAGCTAGCCTTTGTGACGGGCGTGTCGGTGCATAGCGTGGAA
GCAGCTGTCAAGGCCGCACAGATGGGGGTCGACTACTTGCAGGTGGGCAC
CATGTACCTGACGGGGAGCCACCCCGAAAAGCTGGAGGTGGAAGGCACGG
CCTTAATGACGGCCATAGACACGGCGCTCCGCGAAGCCCAGCTTCGGGAC
CGCGTTCTTATCTGTGGTATTGGGGGCATCACCCCCGCCAATTGTGAGGC
TGTGCTACGGGCAGGTGCAGATGGAGTGGCGGTCATCAGTGGCATTGCAG
CGGTGGACAATGATGTGCCCCGTACCGTGGCTGCGTTTCGCGAGGTGTTT
GCGAGGCTAGATACGGCATCAAAAAACAGAGGAGATGCATGTCTATAG back to top
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