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Properties
| Property Name | Value |
|---|
| TranscriptId | 555970 |
| Track | FilteredModels2 |
| ProteinId | 555884 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:221009..224158 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5005 ID=mRNA_5005|Name=jgi.p|Nanoce1779_2|555884|organism=Nannochloropsis oceanica|type=mRNA|length=2829bp
GAAAGCACTTTTTTTTTTTTAATTGATTTTGATTTTTTGAATTTCGTTTA
ATACATTCTCTGACCCTATAGACATGCATCTCCTCTGTTTTTTGATGCCG
TATCTAGCCTCGCAAACACCTCGCGAAACGCAGCCACGGTACGGGGCACA
TCATTGTCCACCGCTGCAATGCCACTGATGACCGCCACTCCATCTGCACC
TGCCCGTAGCACAGCCTCACAATTGGCGGGGGTGATGCCCCCAATACCAC
AGATAAGAACGCGGTCCCGAAGCTGGGCTTCGCGGAGCGCCGTGTCTATG
GCCGTCATTAAGGCCGTGCCTTCCACCTCCAGCTTTTCGGGGTGGCTCCC
CGTCAGGTACATGGTGCCCACCTGAATGCATGTATGCATGTAGTTGGAGA
TAAAGTAAGACATCTTATCGGCGGCGGGGACGGTCTAATTTTCCCTTCTT
TCGCAGCGAACCTGCAAGTAGTCGACCCCCATCTGTGCGGCCTTGACAGC
TGCTTCCTATATGTATGCATGAAACGACATCGTCAGGTATAGAGAACGTA
AACGTATGCCACCGCTTCTCGGATACACACCACGCTATGCACCGACACGC
CCGTCACAAAGGCTAGCTGCTGCCGCTGCTTTTCTTCTTCCTCCTCCTCC
TTCTCCTCCTGCCGCTTTTGCTCTCTAAAAAGCACCATGGATACGCGCTC
CAGACTGTCCTCAGGGAAATGGACTCCATCCAACCCTATATGCATTTCAG
GATGACCATTGATAATAAGAAGGGTTTTGGGGTGCGTATGCTGCTGTTGC
GGCTGCCAGTAGTGGGCTGCGGCAGCATCAAGTTGCTCCCGGCATCGCGT
CACATGGGGTGCCAGGGCCTTGAGTGGAATGGGTGGAGAGAAAGGAGGTA
ATGAACAGAGTATGTGCAGATGTCAGAGGCAAATTCACCTTGAATTCCAT
TTCTTACCTCTGCAGACAAAACCTTGTCGCGGATTTGCACTAATGGCACT
CCGGCCTGGGCGCATTGCTGAACCTTATGTGGAGTTGTCGAGGGGGAAGA
GTGAGGAAGATTCAAGGCTTGTTAGCCCACATTTCGCTAAAATTACCTTC
TCGAACCAAGCCTTCTGCTCCTCCGCCCCTGCAGGAATGGCCGGAGTTAC
GTAGACGAGGAGGATGATGAAACCGCCTATCTTTCAGCTCCACGACTGTA
GGCTTGACTTGCTGGCGCTGGTGGTGGACTTCCTCGATGTGCGTGATCAA
CGCAGCTTTGCGTTGGCGCACTCCTACCATCTCCTGGTCCTGCACACCGT
TCAGCATTGCGGAGTGGCCTCCACGACCATTACTATGACCACACCGACCG
TCTCTCCACCACTAAGTAGCACCAGCACCAGCAGTGCCAGCAGCGGCAAT
AAGGCCGCTGGCAAAGGCCCCTTTTCCTTTGGACTGGGTGAGTTGGACCG
ACCGCGTTTCTTGTACCCCGAGGAGCGGGGTGGGGAGACGGTGGCGTTGG
TGAGCTACCCACGTTCAGGCAACTCCATGTTGCGGAGCCTCCTAGAGAGT
GTCACGGGCGTGGTCACGGGCAGTGATACCCGGCCGGACCGTGTGCTGAG
TCGGAGCTTGCTCAAGAAGGGCTTACGAGGGGAGGGGGTCGTGGACGAGC
GGGCGTGGGTGGTCAAGACACATTGGCCCGAGCGCTACGGCTACCGACGC
TTTCCCACGCAACGGGTTATTCTACTCATCCGCAATCCGTTTGATGCAAT
CCACTCGTACTTTAATATGGGTTTGACAAACACGCACGAGGGGAGACTGG
CAGACGATCTTTATCCATCGCTCCACGAGCTGTGGGAGGACATGGCCCGG
AATGAGGCCAAGATCTGGGCTAAATTCAACACGTTTTGGCTCACACGTGG
CTTACCCGTCTTGGTGCTAAGGTACGAGGACTTGCTGTTGCACACCGAGG
AGATGCTAGTTCGTCTGGTAAGCTTTTTGGAGAAGACTCCACGGGAGGCT
GTGCGGGCGTCAGCACTTTACATGGCGCGGATCCGCAAGAGCGCGGCCAT
TGTTAAGAGACCGTCGGCATCGTCGCCCCCGGAATCGTTGTCCACTCTCG
CTGCCAGAGATGCGGATGCTAAGCCGTCGGCCGCTGGCAGCTGCGACAGC
GGTGACAGCAGTAGCAGCAGTAGCAGCAAGAGCAGGAGCATCTCCTCGAC
TCCTTCATCTTACCCTTGCTCCGACAGCACCACTGACAACAAATCTCCGA
GCATCAGTGGTATTTATGCAAACAGTTTCTATGCCGGAAACACAAGATTT
GGGGCCAGCTTACGCTATTTCTCTTCGGCACTTGTGGAAGAAATAATTAA
ACGAGGAGGGGGCAGCCTACGTTCCTTCGGGTATGACCCTCTCTCCCAGG
GATTTCCACACCAAGTCCTCTCGTTAGCACCTTACGAACGGTGCGTTAAA
TTCGTGGATTCCAGTCTGTTTTCCTTTTCCACGTCAACAGACGGAGGCTT
TACACCTGCTCCACCGGCAGGCGCTGCTTCTGGTGCCACGGCTGCAGCTT
GGGAAGGAAAGGGTAAGGAACGGGAAGAGGAGCGGGTGACTGTGAATAAG
GGGAAGCAATTCGAGGTGAGGGGAAAAGGGGATCGTTTTGGGCGGGAAAT
AACGGCAGTGCGGCATGACCTGACAGACCACGACCGTTGCCCGTTGCCCA
CGGTAGGAAAAGAATAGAGGGAACCTCGAGCGTTAGGGAGGTGTAGTTGG
TCTTCAACACTATGCTGGTGAACGATATCAATGATAATGGCAAGGCTGAT
GCTGAACGAAAAAACTTTGATGAGAAATC back to topprotein sequence of jgi.p|Nanoce1779_2|555884 >mRNA_5005-protein ID=mRNA_5005-protein|Name=jgi.p|Nanoce1779_2|555884|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MMKPPIFQLHDCRLDLLALVVDFLDVRDQRSFALAHSYHLLVLHTVQHCG
VASTTITMTTPTVSPPLSSTSTSSASSGNKAAGKGPFSFGLGELDRPRFL
YPEERGGETVALVSYPRSGNSMLRSLLESVTGVVTGSDTRPDRVLSRSLL
KKGLRGEGVVDERAWVVKTHWPERYGYRRFPTQRVILLIRNPFDAIHSYF
NMGLTNTHEGRLADDLYPSLHELWEDMARNEAKIWAKFNTFWLTRGLPVL
VLRYEDLLLHTEEMLVRLVSFLEKTPREAVRASALYMARIRKSAAIVKRP
SASSPPESLSTLAARDADAKPSAAGSCDSGDSSSSSSSKSRSISSTPSSY
PCSDSTTDNKSPSISGIYANSFYAGNTRFGASLRYFSSALVEEIIKRGGG
SLRSFGYDPLSQGFPHQVLSLAPYERCVKFVDSSLFSFSTSTDGGFTPAP
PAGAASGATAAAWEGKGKEREEERVTVNKGKQFEVRGKGDRFGREITAVR
HDLTDHDRCPLPTVGKE* back to topmRNA from alignment at scaffold_12:221009..224158- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5005 ID=mRNA_5005|Name=jgi.p|Nanoce1779_2|555884|organism=Nannochloropsis oceanica|type=mRNA|length=3150bp|location=Sequence derived from alignment at scaffold_12:221009..224158- (Nannochloropsis oceanica)
GAAAGCACTTTTTTTTTTTTAATTGATTTTGATTTTTTGAATTTCGTTTA
ATACATTCTCTGACCCTATAGACATGCATCTCCTCTGTTTTTTGATGCCG
TATCTAGCCTCGCAAACACCTCGCGAAACGCAGCCACGGTACGGGGCACA
TCATTGTCCACCGCTGCAATGCCACTGATGACCGCCACTCCATCTGCACC
TGCCCGTAGCACAGCCTCACAATTGGCGGGGGTGATGCCCCCAATACCAC
AGATAAGAACGCGGTCCCGAAGCTGGGCTTCGCGGAGCGCCGTGTCTATG
GCCGTCATTAAGGCCGTGCCTTCCACCTCCAGCTTTTCGGGGTGGCTCCC
CGTCAGGTACATGGTGCCCACCTGAATGCATGTATGCATGTAGTTGGAGA
TAAAGTAAGACATCTTATCGGCGGCGGGGACGGTCTAATTTTCCCTTCTT
TCGCAGCGAACCTGCAAGTAGTCGACCCCCATCTGTGCGGCCTTGACAGC
TGCTTCCTATATGTATGCATGAAACGACATCGTCAGGTATAGAGAACGTA
AACGTATGCCACCGCTTCTCGGATACACACCACGCTATGCACCGACACGC
CCGTCACAAAGGCTAGCTGCTGCCGCTGCTTTTCTTCTTCCTCCTCCTCC
TTCTCCTCCTGCCGCTTTTGCTCTCTAAAAAGCACCATGGATACGCGCTC
CAGACTGTCCTCAGGGAAATGGACTCCATCCAACCCTATATGCATTTCAG
GATGACCATTGATAATAAGAAGGGTTTTGGGGTGCGTATGCTGCTGTTGC
GGCTGCCAGTAGTGGGCTGCGGCAGCATCAAGTTGCTCCCGGCATCGCGT
CACATGGGGTGCCAGGGCCTTGAGTGGAATGGGTGGAGAGAAAGGAGGTA
ATGAACAGAGTATGTGCAGATGTCAGAGGCAAATTCACCTTGAATTCCAT
TTCTTACCTCTGCAGACAAAACCTTGTCGCGGATTTGCACTAATGGCACT
CCGGCCTGGGCGCATTGCTGAACCTTATGTGGAGTTGTCGAGGGGGAAGA
GTGAGGAAGATTCAAGGCTTGTTAGCCCACATTTCGCTAAAATTACCTTC
TCGAACCAAGCCTTCTGCTCCTCCGCCCCTGCAGGAATGGCCGGAGTTAC
GTAGACGAGGTAGGGCGTGGGGACAGACAGCTTTGGAGGAGTGGTTGAGG
GGGGTAACTGCTGTCTTAAAGCGACGACACTAATAATCCAGACGATAAGG
GTTAGACTCGTCAGTGGCACCGCGGTGATCAGTAAAGGTATCGGTGGCAC
CCTATTTCTTCCCATCCTCAGCCTGTGGTGTGCATTTGTTGTGTGTGTGG
AGAGTTGTACGTGCGGTCGTAGGAAGGAAGGGAGCTTTTAAGGGGTGGGG
AGGTCATTCATTGCACACGTTGGACCAACCCGACTCACGACATATCCATA
TCGATCCAACCTCTCCCTTCATGTACATAGGAGGATGATGAAACCGCCTA
TCTTTCAGCTCCACGACTGTAGGCTTGACTTGCTGGCGCTGGTGGTGGAC
TTCCTCGATGTGCGTGATCAACGCAGCTTTGCGTTGGCGCACTCCTACCA
TCTCCTGGTCCTGCACACCGTTCAGCATTGCGGAGTGGCCTCCACGACCA
TTACTATGACCACACCGACCGTCTCTCCACCACTAAGTAGCACCAGCACC
AGCAGTGCCAGCAGCGGCAATAAGGCCGCTGGCAAAGGCCCCTTTTCCTT
TGGACTGGGTGAGTTGGACCGACCGCGTTTCTTGTACCCCGAGGAGCGGG
GTGGGGAGACGGTGGCGTTGGTGAGCTACCCACGTTCAGGCAACTCCATG
TTGCGGAGCCTCCTAGAGAGTGTCACGGGCGTGGTCACGGGCAGTGATAC
CCGGCCGGACCGTGTGCTGAGTCGGAGCTTGCTCAAGAAGGGCTTACGAG
GGGAGGGGGTCGTGGACGAGCGGGCGTGGGTGGTCAAGACACATTGGCCC
GAGCGCTACGGCTACCGACGCTTTCCCACGCAACGGGTTATTCTACTCAT
CCGCAATCCGTTTGATGCAATCCACTCGTACTTTAATATGGGTTTGACAA
ACACGCACGAGGGGAGACTGGCAGACGATCTTTATCCATCGCTCCACGAG
CTGTGGGAGGACATGGCCCGGAATGAGGCCAAGATCTGGGCTAAATTCAA
CACGTTTTGGCTCACACGTGGCTTACCCGTCTTGGTGCTAAGGTACGAGG
ACTTGCTGTTGCACACCGAGGAGATGCTAGTTCGTCTGGTAAGCTTTTTG
GAGAAGACTCCACGGGAGGCTGTGCGGGCGTCAGCACTTTACATGGCGCG
GATCCGCAAGAGCGCGGCCATTGTTAAGAGACCGTCGGCATCGTCGCCCC
CGGAATCGTTGTCCACTCTCGCTGCCAGAGATGCGGATGCTAAGCCGTCG
GCCGCTGGCAGCTGCGACAGCGGTGACAGCAGTAGCAGCAGTAGCAGCAA
GAGCAGGAGCATCTCCTCGACTCCTTCATCTTACCCTTGCTCCGACAGCA
CCACTGACAACAAATCTCCGAGCATCAGTGGTATTTATGCAAACAGTTTC
TATGCCGGAAACACAAGATTTGGGGCCAGCTTACGCTATTTCTCTTCGGC
ACTTGTGGAAGAAATAATTAAACGAGGAGGGGGCAGCCTACGTTCCTTCG
GGTATGACCCTCTCTCCCAGGGATTTCCACACCAAGTCCTCTCGTTAGCA
CCTTACGAACGGTGCGTTAAATTCGTGGATTCCAGTCTGTTTTCCTTTTC
CACGTCAACAGACGGAGGCTTTACACCTGCTCCACCGGCAGGCGCTGCTT
CTGGTGCCACGGCTGCAGCTTGGGAAGGAAAGGGTAAGGAACGGGAAGAG
GAGCGGGTGACTGTGAATAAGGGGAAGCAATTCGAGGTGAGGGGAAAAGG
GGATCGTTTTGGGCGGGAAATAACGGCAGTGCGGCATGACCTGACAGACC
ACGACCGTTGCCCGTTGCCCACGGTAGGAAAAGAATAGAGGGAACCTCGA
GCGTTAGGGAGGTGTAGTTGGTCTTCAACACTATGCTGGTGAACGATATC
AATGATAATGGCAAGGCTGATGCTGAACGAAAAAACTTTGATGAGAAATC
back to topCoding sequence (CDS) from alignment at scaffold_12:221009..224158- >mRNA_5005 ID=mRNA_5005|Name=jgi.p|Nanoce1779_2|555884|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at scaffold_12:221009..224158- (Nannochloropsis oceanica)
ATGATGAAACCGCCTATCTTTCAGCTCCACGACTGTAGGCTTGACTTGCT
GGCGCTGGTGGTGGACTTCCTCGATGTGCGTGATCAACGCAGCTTTGCGT
TGGCGCACTCCTACCATCTCCTGGTCCTGCACACCGTTCAGCATTGCGGA
GTGGCCTCCACGACCATTACTATGACCACACCGACCGTCTCTCCACCACT
AAGTAGCACCAGCACCAGCAGTGCCAGCAGCGGCAATAAGGCCGCTGGCA
AAGGCCCCTTTTCCTTTGGACTGGGTGAGTTGGACCGACCGCGTTTCTTG
TACCCCGAGGAGCGGGGTGGGGAGACGGTGGCGTTGGTGAGCTACCCACG
TTCAGGCAACTCCATGTTGCGGAGCCTCCTAGAGAGTGTCACGGGCGTGG
TCACGGGCAGTGATACCCGGCCGGACCGTGTGCTGAGTCGGAGCTTGCTC
AAGAAGGGCTTACGAGGGGAGGGGGTCGTGGACGAGCGGGCGTGGGTGGT
CAAGACACATTGGCCCGAGCGCTACGGCTACCGACGCTTTCCCACGCAAC
GGGTTATTCTACTCATCCGCAATCCGTTTGATGCAATCCACTCGTACTTT
AATATGGGTTTGACAAACACGCACGAGGGGAGACTGGCAGACGATCTTTA
TCCATCGCTCCACGAGCTGTGGGAGGACATGGCCCGGAATGAGGCCAAGA
TCTGGGCTAAATTCAACACGTTTTGGCTCACACGTGGCTTACCCGTCTTG
GTGCTAAGGTACGAGGACTTGCTGTTGCACACCGAGGAGATGCTAGTTCG
TCTGGTAAGCTTTTTGGAGAAGACTCCACGGGAGGCTGTGCGGGCGTCAG
CACTTTACATGGCGCGGATCCGCAAGAGCGCGGCCATTGTTAAGAGACCG
TCGGCATCGTCGCCCCCGGAATCGTTGTCCACTCTCGCTGCCAGAGATGC
GGATGCTAAGCCGTCGGCCGCTGGCAGCTGCGACAGCGGTGACAGCAGTA
GCAGCAGTAGCAGCAAGAGCAGGAGCATCTCCTCGACTCCTTCATCTTAC
CCTTGCTCCGACAGCACCACTGACAACAAATCTCCGAGCATCAGTGGTAT
TTATGCAAACAGTTTCTATGCCGGAAACACAAGATTTGGGGCCAGCTTAC
GCTATTTCTCTTCGGCACTTGTGGAAGAAATAATTAAACGAGGAGGGGGC
AGCCTACGTTCCTTCGGGTATGACCCTCTCTCCCAGGGATTTCCACACCA
AGTCCTCTCGTTAGCACCTTACGAACGGTGCGTTAAATTCGTGGATTCCA
GTCTGTTTTCCTTTTCCACGTCAACAGACGGAGGCTTTACACCTGCTCCA
CCGGCAGGCGCTGCTTCTGGTGCCACGGCTGCAGCTTGGGAAGGAAAGGG
TAAGGAACGGGAAGAGGAGCGGGTGACTGTGAATAAGGGGAAGCAATTCG
AGGTGAGGGGAAAAGGGGATCGTTTTGGGCGGGAAATAACGGCAGTGCGG
CATGACCTGACAGACCACGACCGTTGCCCGTTGCCCACGGTAGGAAAAGA
ATAG back to top
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