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Properties
| Property Name | Value |
|---|
| TranscriptId | 591146 |
| Track | FilteredModels2 |
| ProteinId | 591060 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:216696..218014 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5003 ID=mRNA_5003|Name=jgi.p|Nanoce1779_2|591060|organism=Nannochloropsis oceanica|type=mRNA|length=1319bp
GGACACTTCCTAAGATTGGTGCCATGGTGGCCACCCTACGAGCTGGCAGC
TTTTGAGCTTTTGAAAATGCCCTGCATTTGTGTCATGTGGCAAGGCATGT
CGTGTTGACGGCAAGTCGCCCGGCTTTGCTTGGGTGTGCAAGAAGATGAT
GAACATGCAGCCAGGCAATATACTTCCAATCTCAACCAAGCACGATCACA
AACGTGCACACACAACACACACGCGCACAGGATAATCCTATGGCGTCGTT
CCGCGTGGTAGTGGCCTCGCTGTTGGCACGAAGGGGTGTGCCTTCTTGCC
AGAGATCAACCGCTGCCACGGCCGCCGCTGCTTATCGAGGCCTGTCGACA
TCCGCTGCGGCGTTGGGGGACAACGAGGTAGCGCTTAGCATCCTCGCCGC
GCCCGTCACGGCGGCAGACATGGACAGCAAGAGTCCGGCAGGTGCGGAGG
GTGTGGGGATCGTGACGGCGGTGGGGAGCAAGGTCAAAGACTTGGCAGTC
CATGATTGGGTGGTGCCGACATCGGGCTCGGTACCAACGTTCCGCAGTGC
TGCCAAAGCCAAGGAAGTTGACCTGGCCAAGGTCCCCTCAGACATTCCTG
TAGAATTTGCTGCCTGTATGGGCACGGCGTTGACGGCCTTGCGGTTGCTG
TCGGGTGTCAAGGGTGGGGAGTATGTGTTGCAGGCGGACGCGGACTCGCC
GGTGGGGTTGGCCGTCGTTCAGATAGCCCAGGCTCGAGGTGTGGGCACGA
TTAACATTGTTACGGATGGCCCAGGGTTTTTTGATAAGGCGGGTTTGATC
AAGGATTTGGGTGGGGATGTGGTGGTCAAGGATACCTATGCCACAGGTAA
TGCCGGGTTCGCAAAAATCCTGTCGGAGCTGCCGAAGCCTAGTCTAGCGC
TGGCGGCCACTGAGGCAGGCTCAGCGGTGGTGGGTAAGGTCGGGATGGGA
CTGAAGGCCAACTTGTACGCAACAGCGGGGGAGAGCAGTTTAAAAAAGGC
GACGGCGTCGGAAATTGAGTCGGCCGCAAGCATGTTCAGGTCGGGGGCTT
TGCAACTGTGGGTGGAACGACACCCGTTGTCGGACTTGCCAGTGGCATTA
AAGGAGGCCTCTGAACCGTTTAAGACACGCAAGGTGGTAGTGATGATAAA
TGAGCCACCCAGGCCGAAGGTTGACGAGGCGAAGCTGTCCGCGGACTTTG
AGAAGGCCTTTCAGAAGCTCAAGGCATAGGGTTGGAGGAGAGGGAGGGAG
GGAGGGAAAGAGAGAGGAGAGCTATTTGTGTTTCAAGACGTGCGGGCATT
GGTCTGATGGTACATTATG back to topprotein sequence of jgi.p|Nanoce1779_2|591060 >mRNA_5003-protein ID=mRNA_5003-protein|Name=jgi.p|Nanoce1779_2|591060|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MASFRVVVASLLARRGVPSCQRSTAATAAAAYRGLSTSAAALGDNEVALS
ILAAPVTAADMDSKSPAGAEGVGIVTAVGSKVKDLAVHDWVVPTSGSVPT
FRSAAKAKEVDLAKVPSDIPVEFAACMGTALTALRLLSGVKGGEYVLQAD
ADSPVGLAVVQIAQARGVGTINIVTDGPGFFDKAGLIKDLGGDVVVKDTY
ATGNAGFAKILSELPKPSLALAATEAGSAVVGKVGMGLKANLYATAGESS
LKKATASEIESAASMFRSGALQLWVERHPLSDLPVALKEASEPFKTRKVV
VMINEPPRPKVDEAKLSADFEKAFQKLKA* back to topmRNA from alignment at scaffold_12:216696..218014- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5003 ID=mRNA_5003|Name=jgi.p|Nanoce1779_2|591060|organism=Nannochloropsis oceanica|type=mRNA|length=1319bp|location=Sequence derived from alignment at scaffold_12:216696..218014- (Nannochloropsis oceanica)
GGACACTTCCTAAGATTGGTGCCATGGTGGCCACCCTACGAGCTGGCAGC
TTTTGAGCTTTTGAAAATGCCCTGCATTTGTGTCATGTGGCAAGGCATGT
CGTGTTGACGGCAAGTCGCCCGGCTTTGCTTGGGTGTGCAAGAAGATGAT
GAACATGCAGCCAGGCAATATACTTCCAATCTCAACCAAGCACGATCACA
AACGTGCACACACAACACACACGCGCACAGGATAATCCTATGGCGTCGTT
CCGCGTGGTAGTGGCCTCGCTGTTGGCACGAAGGGGTGTGCCTTCTTGCC
AGAGATCAACCGCTGCCACGGCCGCCGCTGCTTATCGAGGCCTGTCGACA
TCCGCTGCGGCGTTGGGGGACAACGAGGTAGCGCTTAGCATCCTCGCCGC
GCCCGTCACGGCGGCAGACATGGACAGCAAGAGTCCGGCAGGTGCGGAGG
GTGTGGGGATCGTGACGGCGGTGGGGAGCAAGGTCAAAGACTTGGCAGTC
CATGATTGGGTGGTGCCGACATCGGGCTCGGTACCAACGTTCCGCAGTGC
TGCCAAAGCCAAGGAAGTTGACCTGGCCAAGGTCCCCTCAGACATTCCTG
TAGAATTTGCTGCCTGTATGGGCACGGCGTTGACGGCCTTGCGGTTGCTG
TCGGGTGTCAAGGGTGGGGAGTATGTGTTGCAGGCGGACGCGGACTCGCC
GGTGGGGTTGGCCGTCGTTCAGATAGCCCAGGCTCGAGGTGTGGGCACGA
TTAACATTGTTACGGATGGCCCAGGGTTTTTTGATAAGGCGGGTTTGATC
AAGGATTTGGGTGGGGATGTGGTGGTCAAGGATACCTATGCCACAGGTAA
TGCCGGGTTCGCAAAAATCCTGTCGGAGCTGCCGAAGCCTAGTCTAGCGC
TGGCGGCCACTGAGGCAGGCTCAGCGGTGGTGGGTAAGGTCGGGATGGGA
CTGAAGGCCAACTTGTACGCAACAGCGGGGGAGAGCAGTTTAAAAAAGGC
GACGGCGTCGGAAATTGAGTCGGCCGCAAGCATGTTCAGGTCGGGGGCTT
TGCAACTGTGGGTGGAACGACACCCGTTGTCGGACTTGCCAGTGGCATTA
AAGGAGGCCTCTGAACCGTTTAAGACACGCAAGGTGGTAGTGATGATAAA
TGAGCCACCCAGGCCGAAGGTTGACGAGGCGAAGCTGTCCGCGGACTTTG
AGAAGGCCTTTCAGAAGCTCAAGGCATAGGGTTGGAGGAGAGGGAGGGAG
GGAGGGAAAGAGAGAGGAGAGCTATTTGTGTTTCAAGACGTGCGGGCATT
GGTCTGATGGTACATTATG back to topCoding sequence (CDS) from alignment at scaffold_12:216696..218014- >mRNA_5003 ID=mRNA_5003|Name=jgi.p|Nanoce1779_2|591060|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_12:216696..218014- (Nannochloropsis oceanica)
ATGGCGTCGTTCCGCGTGGTAGTGGCCTCGCTGTTGGCACGAAGGGGTGT
GCCTTCTTGCCAGAGATCAACCGCTGCCACGGCCGCCGCTGCTTATCGAG
GCCTGTCGACATCCGCTGCGGCGTTGGGGGACAACGAGGTAGCGCTTAGC
ATCCTCGCCGCGCCCGTCACGGCGGCAGACATGGACAGCAAGAGTCCGGC
AGGTGCGGAGGGTGTGGGGATCGTGACGGCGGTGGGGAGCAAGGTCAAAG
ACTTGGCAGTCCATGATTGGGTGGTGCCGACATCGGGCTCGGTACCAACG
TTCCGCAGTGCTGCCAAAGCCAAGGAAGTTGACCTGGCCAAGGTCCCCTC
AGACATTCCTGTAGAATTTGCTGCCTGTATGGGCACGGCGTTGACGGCCT
TGCGGTTGCTGTCGGGTGTCAAGGGTGGGGAGTATGTGTTGCAGGCGGAC
GCGGACTCGCCGGTGGGGTTGGCCGTCGTTCAGATAGCCCAGGCTCGAGG
TGTGGGCACGATTAACATTGTTACGGATGGCCCAGGGTTTTTTGATAAGG
CGGGTTTGATCAAGGATTTGGGTGGGGATGTGGTGGTCAAGGATACCTAT
GCCACAGGTAATGCCGGGTTCGCAAAAATCCTGTCGGAGCTGCCGAAGCC
TAGTCTAGCGCTGGCGGCCACTGAGGCAGGCTCAGCGGTGGTGGGTAAGG
TCGGGATGGGACTGAAGGCCAACTTGTACGCAACAGCGGGGGAGAGCAGT
TTAAAAAAGGCGACGGCGTCGGAAATTGAGTCGGCCGCAAGCATGTTCAG
GTCGGGGGCTTTGCAACTGTGGGTGGAACGACACCCGTTGTCGGACTTGC
CAGTGGCATTAAAGGAGGCCTCTGAACCGTTTAAGACACGCAAGGTGGTA
GTGATGATAAATGAGCCACCCAGGCCGAAGGTTGACGAGGCGAAGCTGTC
CGCGGACTTTGAGAAGGCCTTTCAGAAGCTCAAGGCATAG back to top
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