jgi.p|Nanoce1779_2|542442, mRNA_5000 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|542442
Unique Name	mRNA_5000
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2578
Alignment location	scaffold_12:212061..214638 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	542528
Track	FilteredModels2
ProteinId	542442

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:212061..214638 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|542442	gene_5000	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5000	CDS_5000	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|542442	mRNA_5000-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:212061..214638-
coding sequence from alignment at scaffold_12:212061..214638-

mRNA sequence

>mRNA_5000 ID=mRNA_5000|Name=jgi.p|Nanoce1779_2|542442|organism=Nannochloropsis oceanica|type=mRNA|length=2578bp
CGCCAATTTTCCCTCAGAAGCATATGATGCCCTCCCTCCTCTACCCTGTG
CCTTCAATGCCTCATCTCAGGCATTCAACAAACGCGCCCACCCTCCAACT
CACCCTCTTGAACCTCAGAGTATCGGTGATAGCAGCTGTGGTAGTGGTGT
GGTGGCTTGCGGGGGTCCCGGGGGCGAGTTTATTTTGGCCGTGCTTGCGC
TCATAACGTTGTAGCCTTGCTCAACTCTGACACCCCTCCTCTCAATTTCC
CCGCTCTTCACTTCAAGACACAATAGGGTCTTCCCCGCACGCCCCACGCT
CGCGAATAACACAATTCCTCTTTCTCCTAGTGGTGGCAGTGGCAGCGGCA
GGCCTTGGTGGCGGCGTTTGTAAAGAACGACCAGAATGGATCTATCTCAT
GGGAACGGCGACACAGAAACCCAAAGGGCCACAATGCCTACCACTTTGAG
CCCTCAACGCACACCCTTACCCGACAAGACAGCAATTATGGTCCCGCAGA
CGGAGATTGAAATGTCTGCCTCATTCTTGTCGTCCTCTACGCGGCCTGCC
TCTCGAGCGGGCCGGCCGTTGCCCGGGTTAGCCACCTCGCGTGGCCGAAT
GCTGAAGGAGTCGTCGACACGCATCATCTACTTGCTGGCCCTATTGGCAA
TTGAAAGCCATGGTCCCTTCCAAAGGAGCAGCAGTAACGGGAACAGCAGC
AGTGGGCAATCGCTACGACGTCGCTTGAGCAAGGAGGAGGCGCGGTTGGA
AATGGCGAGGCAAGAACGCTTGTTGGTGTACGTTGACTCCCTATCAGACG
TCTTAGCCCTCGAAGATGACTCGGGCTTGCGTGCCATGATCGCTGCAGCC
TGCGAAGACGGCGGTTTGGTCTCGCAGCAGCAGCAGAAAGGAAAGGAAGA
TGAGCAAGAGCAAGAGCAAGAGCAAGATTGCTTCGTTCTCATCCAAACCG
TCTCCGAGTTGGTCGACGAATTGTTGGCAGAAGTCAAAGCCAGTTGTCCC
TCTCCCTCTGACTCTGCTTGGCTCTCCCTCATCATGAAAGTCCTAATCAC
GTACCAAGTCCGGGCAAATCTCTACGACGCCCGCGCTCGGGCAAGCTACC
GTCGCCTCTCCCAACGCCTCGGCCCTTCACTCCTACCCTGGGCGGAAGTA
GTAGCAATTGAGACGGCCCTCGCCGCAGAGTATTCTGCGCTTCTTTCCGA
TTCTCAAGTAGATCCCCCTTCCTGCCAGAGCCTGGGAAGATATCTGAAGG
TGGCTTGCGCAGCCCTGGGAGGAGGAGCACTGATGCTGTACACTGGCTCG
GTAGCCGCCCCCTCCATCGCTGCCTCCCTTCTCGCCTTGTGCACCGCCGG
AGGAATGGGCATGGGGCCCGCCACAGCGGCAATCACGCAACAGCTGACAA
GTGGCACGGCTACGTTGTTGTCCTACTGGGGCTTGACGTCGGATGTGTGT
ATTTCCTCCTTTCTGGCCGTTACGGGAGTCGGGGTAACGGGGTACAAAAT
GACGCAGCGCACTCGGGGAATCACGGAATTTCATTTCCTCCCCCTCCATT
CATCCTATCCTTGGCATCAGCATGCCAAGCAGCAGCAGCAGCAGCAGCAG
CAGGAGCATGAGGAGGAAACGGAGGGGGAGGACGTGGCGGAGATGCTCGC
GGTGAGCAGTCACCACGACAGCAGCAGCAGCAGCAGCAACAGCAGCTACC
GCAGAAGTGGCAGCAGTGGTGGCGGGACGGGGGGCTTGCCTGTCTTTATT
TGTATTCCGGGATGGGTTGAGGAGGGGCAGGACCCGCGCCGCGTCTGGGG
AGGGGCGGCCATGACCGTTGCCTCAGGGGGGAGCACCGTAACAGTCGAAT
CAACAGCAGATGTAGGAGGAGGATCAGGTGGCACTGGGGCGGCTGAAGTC
GGAAAAGGGGAGGGAGAAATGGTTGATGCGGCAATGGTGGGGGAGGGAGG
GAGGGAGGAGGGGTGGGAAAGCTCGACCATGTCGGAGGGGGGTTGGGAAG
AAGTGGAAGTGGAAACAAGTGGATGGTGGCGGGAGATTGTGCCAGGGGGG
GAGGAGCACGTCCTGATCTGGGAGACGGCGTTATTGGGTCACTTGCACAG
GGCCATGCGCGAGTTTGTCTGGCACGAGGCCTCACGGTATGCGATTGACG
AGGTAATCAAGCACACAGCCCTGGTCGGTCTAACGACGGCGGCCGCGCTC
CCTCTCTCCGTATTGACGGCGGCCCGCAAGCTCGACAACCCCTGGCAGCT
CGCTGTGCTCCACGCGCAGGAGGCAGGCCAGCTACTTGCCGACGTTCTTG
TGGCCCGCCCGCAGGGGTCTCGGCCTGTGACGCTTTTGGGGTTCAGTATG
GGAGCGCGTGTGATCTTTCATTGCTTGGAGGCCTTGGCGGGGAGGGGGGA
AGAGGGGCTGGGGATTGTCGAGAATGCGGTGTTGCTCGGTTTGCCGTTTG
GGCGGGCGTCGGAACGATGGGAGATGGCGAGGGGGGTGGTGGCGGGGAGG
TTAATCAACGGCTATTCGACGCGGGACTGGGTGTTGCAATTTTTGTTTCG
GAGCAAGGCCTGGGAGCTGGGCTTGGCG

protein sequence of jgi.p|Nanoce1779_2|542442

>mRNA_5000-protein ID=mRNA_5000-protein|Name=jgi.p|Nanoce1779_2|542442|organism=Nannochloropsis oceanica|type=polypeptide|length=731bp
MDLSHGNGDTETQRATMPTTLSPQRTPLPDKTAIMVPQTEIEMSASFLSS
STRPASRAGRPLPGLATSRGRMLKESSTRIIYLLALLAIESHGPFQRSSS
NGNSSSGQSLRRRLSKEEARLEMARQERLLVYVDSLSDVLALEDDSGLRA
MIAAACEDGGLVSQQQQKGKEDEQEQEQEQDCFVLIQTVSELVDELLAEV
KASCPSPSDSAWLSLIMKVLITYQVRANLYDARARASYRRLSQRLGPSLL
PWAEVVAIETALAAEYSALLSDSQVDPPSCQSLGRYLKVACAALGGGALM
LYTGSVAAPSIAASLLALCTAGGMGMGPATAAITQQLTSGTATLLSYWGL
TSDVCISSFLAVTGVGVTGYKMTQRTRGITEFHFLPLHSSYPWHQHAKQQ
QQQQQQEHEEETEGEDVAEMLAVSSHHDSSSSSSNSSYRRSGSSGGGTGG
LPVFICIPGWVEEGQDPRRVWGGAAMTVASGGSTVTVESTADVGGGSGGT
GAAEVGKGEGEMVDAAMVGEGGREEGWESSTMSEGGWEEVEVETSGWWRE
IVPGGEEHVLIWETALLGHLHRAMREFVWHEASRYAIDEVIKHTALVGLT
TAAALPLSVLTAARKLDNPWQLAVLHAQEAGQLLADVLVARPQGSRPVTL
LGFSMGARVIFHCLEALAGRGEEGLGIVENAVLLGLPFGRASERWEMARG
VVAGRLINGYSTRDWVLQFLFRSKAWELGLA

mRNA from alignment at scaffold_12:212061..214638-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5000 ID=mRNA_5000|Name=jgi.p|Nanoce1779_2|542442|organism=Nannochloropsis oceanica|type=mRNA|length=2578bp|location=Sequence derived from alignment at scaffold_12:212061..214638- (Nannochloropsis oceanica)
CGCCAATTTTCCCTCAGAAGCATATGATGCCCTCCCTCCTCTACCCTGTG
CCTTCAATGCCTCATCTCAGGCATTCAACAAACGCGCCCACCCTCCAACT
CACCCTCTTGAACCTCAGAGTATCGGTGATAGCAGCTGTGGTAGTGGTGT
GGTGGCTTGCGGGGGTCCCGGGGGCGAGTTTATTTTGGCCGTGCTTGCGC
TCATAACGTTGTAGCCTTGCTCAACTCTGACACCCCTCCTCTCAATTTCC
CCGCTCTTCACTTCAAGACACAATAGGGTCTTCCCCGCACGCCCCACGCT
CGCGAATAACACAATTCCTCTTTCTCCTAGTGGTGGCAGTGGCAGCGGCA
GGCCTTGGTGGCGGCGTTTGTAAAGAACGACCAGAATGGATCTATCTCAT
GGGAACGGCGACACAGAAACCCAAAGGGCCACAATGCCTACCACTTTGAG
CCCTCAACGCACACCCTTACCCGACAAGACAGCAATTATGGTCCCGCAGA
CGGAGATTGAAATGTCTGCCTCATTCTTGTCGTCCTCTACGCGGCCTGCC
TCTCGAGCGGGCCGGCCGTTGCCCGGGTTAGCCACCTCGCGTGGCCGAAT
GCTGAAGGAGTCGTCGACACGCATCATCTACTTGCTGGCCCTATTGGCAA
TTGAAAGCCATGGTCCCTTCCAAAGGAGCAGCAGTAACGGGAACAGCAGC
AGTGGGCAATCGCTACGACGTCGCTTGAGCAAGGAGGAGGCGCGGTTGGA
AATGGCGAGGCAAGAACGCTTGTTGGTGTACGTTGACTCCCTATCAGACG
TCTTAGCCCTCGAAGATGACTCGGGCTTGCGTGCCATGATCGCTGCAGCC
TGCGAAGACGGCGGTTTGGTCTCGCAGCAGCAGCAGAAAGGAAAGGAAGA
TGAGCAAGAGCAAGAGCAAGAGCAAGATTGCTTCGTTCTCATCCAAACCG
TCTCCGAGTTGGTCGACGAATTGTTGGCAGAAGTCAAAGCCAGTTGTCCC
TCTCCCTCTGACTCTGCTTGGCTCTCCCTCATCATGAAAGTCCTAATCAC
GTACCAAGTCCGGGCAAATCTCTACGACGCCCGCGCTCGGGCAAGCTACC
GTCGCCTCTCCCAACGCCTCGGCCCTTCACTCCTACCCTGGGCGGAAGTA
GTAGCAATTGAGACGGCCCTCGCCGCAGAGTATTCTGCGCTTCTTTCCGA
TTCTCAAGTAGATCCCCCTTCCTGCCAGAGCCTGGGAAGATATCTGAAGG
TGGCTTGCGCAGCCCTGGGAGGAGGAGCACTGATGCTGTACACTGGCTCG
GTAGCCGCCCCCTCCATCGCTGCCTCCCTTCTCGCCTTGTGCACCGCCGG
AGGAATGGGCATGGGGCCCGCCACAGCGGCAATCACGCAACAGCTGACAA
GTGGCACGGCTACGTTGTTGTCCTACTGGGGCTTGACGTCGGATGTGTGT
ATTTCCTCCTTTCTGGCCGTTACGGGAGTCGGGGTAACGGGGTACAAAAT
GACGCAGCGCACTCGGGGAATCACGGAATTTCATTTCCTCCCCCTCCATT
CATCCTATCCTTGGCATCAGCATGCCAAGCAGCAGCAGCAGCAGCAGCAG
CAGGAGCATGAGGAGGAAACGGAGGGGGAGGACGTGGCGGAGATGCTCGC
GGTGAGCAGTCACCACGACAGCAGCAGCAGCAGCAGCAACAGCAGCTACC
GCAGAAGTGGCAGCAGTGGTGGCGGGACGGGGGGCTTGCCTGTCTTTATT
TGTATTCCGGGATGGGTTGAGGAGGGGCAGGACCCGCGCCGCGTCTGGGG
AGGGGCGGCCATGACCGTTGCCTCAGGGGGGAGCACCGTAACAGTCGAAT
CAACAGCAGATGTAGGAGGAGGATCAGGTGGCACTGGGGCGGCTGAAGTC
GGAAAAGGGGAGGGAGAAATGGTTGATGCGGCAATGGTGGGGGAGGGAGG
GAGGGAGGAGGGGTGGGAAAGCTCGACCATGTCGGAGGGGGGTTGGGAAG
AAGTGGAAGTGGAAACAAGTGGATGGTGGCGGGAGATTGTGCCAGGGGGG
GAGGAGCACGTCCTGATCTGGGAGACGGCGTTATTGGGTCACTTGCACAG
GGCCATGCGCGAGTTTGTCTGGCACGAGGCCTCACGGTATGCGATTGACG
AGGTAATCAAGCACACAGCCCTGGTCGGTCTAACGACGGCGGCCGCGCTC
CCTCTCTCCGTATTGACGGCGGCCCGCAAGCTCGACAACCCCTGGCAGCT
CGCTGTGCTCCACGCGCAGGAGGCAGGCCAGCTACTTGCCGACGTTCTTG
TGGCCCGCCCGCAGGGGTCTCGGCCTGTGACGCTTTTGGGGTTCAGTATG
GGAGCGCGTGTGATCTTTCATTGCTTGGAGGCCTTGGCGGGGAGGGGGGA
AGAGGGGCTGGGGATTGTCGAGAATGCGGTGTTGCTCGGTTTGCCGTTTG
GGCGGGCGTCGGAACGATGGGAGATGGCGAGGGGGGTGGTGGCGGGGAGG
TTAATCAACGGCTATTCGACGCGGGACTGGGTGTTGCAATTTTTGTTTCG
GAGCAAGGCCTGGGAGCTGGGCTTGGCG

Coding sequence (CDS) from alignment at scaffold_12:212061..214638-

>mRNA_5000 ID=mRNA_5000|Name=jgi.p|Nanoce1779_2|542442|organism=Nannochloropsis oceanica|type=CDS|length=2193bp|location=Sequence derived from alignment at scaffold_12:212061..214638- (Nannochloropsis oceanica)
ATGGATCTATCTCATGGGAACGGCGACACAGAAACCCAAAGGGCCACAAT
GCCTACCACTTTGAGCCCTCAACGCACACCCTTACCCGACAAGACAGCAA
TTATGGTCCCGCAGACGGAGATTGAAATGTCTGCCTCATTCTTGTCGTCC
TCTACGCGGCCTGCCTCTCGAGCGGGCCGGCCGTTGCCCGGGTTAGCCAC
CTCGCGTGGCCGAATGCTGAAGGAGTCGTCGACACGCATCATCTACTTGC
TGGCCCTATTGGCAATTGAAAGCCATGGTCCCTTCCAAAGGAGCAGCAGT
AACGGGAACAGCAGCAGTGGGCAATCGCTACGACGTCGCTTGAGCAAGGA
GGAGGCGCGGTTGGAAATGGCGAGGCAAGAACGCTTGTTGGTGTACGTTG
ACTCCCTATCAGACGTCTTAGCCCTCGAAGATGACTCGGGCTTGCGTGCC
ATGATCGCTGCAGCCTGCGAAGACGGCGGTTTGGTCTCGCAGCAGCAGCA
GAAAGGAAAGGAAGATGAGCAAGAGCAAGAGCAAGAGCAAGATTGCTTCG
TTCTCATCCAAACCGTCTCCGAGTTGGTCGACGAATTGTTGGCAGAAGTC
AAAGCCAGTTGTCCCTCTCCCTCTGACTCTGCTTGGCTCTCCCTCATCAT
GAAAGTCCTAATCACGTACCAAGTCCGGGCAAATCTCTACGACGCCCGCG
CTCGGGCAAGCTACCGTCGCCTCTCCCAACGCCTCGGCCCTTCACTCCTA
CCCTGGGCGGAAGTAGTAGCAATTGAGACGGCCCTCGCCGCAGAGTATTC
TGCGCTTCTTTCCGATTCTCAAGTAGATCCCCCTTCCTGCCAGAGCCTGG
GAAGATATCTGAAGGTGGCTTGCGCAGCCCTGGGAGGAGGAGCACTGATG
CTGTACACTGGCTCGGTAGCCGCCCCCTCCATCGCTGCCTCCCTTCTCGC
CTTGTGCACCGCCGGAGGAATGGGCATGGGGCCCGCCACAGCGGCAATCA
CGCAACAGCTGACAAGTGGCACGGCTACGTTGTTGTCCTACTGGGGCTTG
ACGTCGGATGTGTGTATTTCCTCCTTTCTGGCCGTTACGGGAGTCGGGGT
AACGGGGTACAAAATGACGCAGCGCACTCGGGGAATCACGGAATTTCATT
TCCTCCCCCTCCATTCATCCTATCCTTGGCATCAGCATGCCAAGCAGCAG
CAGCAGCAGCAGCAGCAGGAGCATGAGGAGGAAACGGAGGGGGAGGACGT
GGCGGAGATGCTCGCGGTGAGCAGTCACCACGACAGCAGCAGCAGCAGCA
GCAACAGCAGCTACCGCAGAAGTGGCAGCAGTGGTGGCGGGACGGGGGGC
TTGCCTGTCTTTATTTGTATTCCGGGATGGGTTGAGGAGGGGCAGGACCC
GCGCCGCGTCTGGGGAGGGGCGGCCATGACCGTTGCCTCAGGGGGGAGCA
CCGTAACAGTCGAATCAACAGCAGATGTAGGAGGAGGATCAGGTGGCACT
GGGGCGGCTGAAGTCGGAAAAGGGGAGGGAGAAATGGTTGATGCGGCAAT
GGTGGGGGAGGGAGGGAGGGAGGAGGGGTGGGAAAGCTCGACCATGTCGG
AGGGGGGTTGGGAAGAAGTGGAAGTGGAAACAAGTGGATGGTGGCGGGAG
ATTGTGCCAGGGGGGGAGGAGCACGTCCTGATCTGGGAGACGGCGTTATT
GGGTCACTTGCACAGGGCCATGCGCGAGTTTGTCTGGCACGAGGCCTCAC
GGTATGCGATTGACGAGGTAATCAAGCACACAGCCCTGGTCGGTCTAACG
ACGGCGGCCGCGCTCCCTCTCTCCGTATTGACGGCGGCCCGCAAGCTCGA
CAACCCCTGGCAGCTCGCTGTGCTCCACGCGCAGGAGGCAGGCCAGCTAC
TTGCCGACGTTCTTGTGGCCCGCCCGCAGGGGTCTCGGCCTGTGACGCTT
TTGGGGTTCAGTATGGGAGCGCGTGTGATCTTTCATTGCTTGGAGGCCTT
GGCGGGGAGGGGGGAAGAGGGGCTGGGGATTGTCGAGAATGCGGTGTTGC
TCGGTTTGCCGTTTGGGCGGGCGTCGGAACGATGGGAGATGGCGAGGGGG
GTGGTGGCGGGGAGGTTAATCAACGGCTATTCGACGCGGGACTGGGTGTT
GCAATTTTTGTTTCGGAGCAAGGCCTGGGAGCTGGGCTTGGCG

Synonyms

Publications