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Properties
| Property Name | Value |
|---|
| TranscriptId | 576115 |
| Track | FilteredModels2 |
| ProteinId | 576029 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:138758..140545 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_50 ID=mRNA_50|Name=jgi.p|Nanoce1779_2|576029|organism=Nannochloropsis oceanica|type=mRNA|length=820bp
ACAGGCCATACCCCTAATCATGGCAAGACGCTACGATTCGTCGACCACCA
CGTTCTCGCCGGAAGGCCGTCTGCATCAGGTTGAGTACGCCATTGAGGCT
ATCAACAACGCCGGAACCTGCGTGGGCATCCTCTGCGCCGACGGTATAGT
CCTGGCAGCGGAACGAAAGACCACCAGCAAGCTTCTAGCACCATCTAAGT
CCAGCGACAAGATTTACCAGATCGACGGGCACATCGCCTGTGTGGTGGCG
GGCCTGACGTCTGATGCTAACATTCTGATAAACCAAGCCCGTCTGTCCGC
CCAACGCTACCTGTACCAGTACCAAGAGACCATGCCCGTCGAGCAGCTCG
TGCGGTCCATCTGCGACTACAAGCAGGCGTATACACAGTACGGAGGGCTG
CGCCCTTTCGGGGTCTCCTTCCTGTTTGCCGGCTACGACAGGCACCATGG
TTTCCAGCTATACGAGTCTGATCCTGCCGGGACCTTCGGGGGATGGACCG
CCACAGCCATTGGCGCCAATTTTCAGGCCGGGAAAAATCTGTTGAAGAAC
GAATTTCCGGAGGGGGACAAGCCTACGCTGGCGGAAGGTTTGAAGCTGGC
GGCCAAGGTGTTGCTTAAGACGATGGATACCACCACGCCGTCCGCGGAGA
AGGTGGAGTTTTTCACGCTCAAGGCCGCGGAGAAGGTGGGGGGGAGGGTG
GTTCACGCCACGCTGGGGACGGAGGAGACGACAGCCTTATTGAACGAGGT
CAGCGCAGCCACTGCCCCTGAGGGGGACATGTAAGGGGGGGGAGGGGAGG
ACGGAGAGAGGGGAGGAGGG back to topprotein sequence of jgi.p|Nanoce1779_2|576029 >mRNA_50-protein ID=mRNA_50-protein|Name=jgi.p|Nanoce1779_2|576029|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MARRYDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILCADGIVLAAERK
TTSKLLAPSKSSDKIYQIDGHIACVVAGLTSDANILINQARLSAQRYLYQ
YQETMPVEQLVRSICDYKQAYTQYGGLRPFGVSFLFAGYDRHHGFQLYES
DPAGTFGGWTATAIGANFQAGKNLLKNEFPEGDKPTLAEGLKLAAKVLLK
TMDTTTPSAEKVEFFTLKAAEKVGGRVVHATLGTEETTALLNEVSAATAP
EGDM* back to topmRNA from alignment at scaffold_3:138758..140545+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_50 ID=mRNA_50|Name=jgi.p|Nanoce1779_2|576029|organism=Nannochloropsis oceanica|type=mRNA|length=1788bp|location=Sequence derived from alignment at scaffold_3:138758..140545+ (Nannochloropsis oceanica)
ACAGGCCATACCCCTAATCATGGCAAGACGCTACGATTCGTCGACCACCA
CGTTCTCGCCGGAAGGTGCGTTTTTTGCGTCCTTCAATCTATCTGCCTGT
ATGATTGTTGCCTGTCTCTTCCCCCTCCCAAGCATCATCATGCCCCGTTC
CACGTCCCAACCCCTTCCCCCGCACCTGTGTCTTGAGTCCACGGTAACAG
TGCAGACTACACCGCCCCTCGCCCCTCGTCTCATGTTACCTTTTGCCCGT
CTATCTCTGACCTCCTTTTCCCCTACCCCGAAAGGCCGTCTGCATCAGGT
TGAGTACGCCATTGAGGCTATCAACAACGCCGGAACCTGCGTGGGCATCC
TCTGCGCCGACGGTATAGTCCTGGCAGCGGAACGAAAGACCACCAGCAAG
CTTCTAGCACCATCTAAGTCCAGCGACAAGATTTACCAGATCGACGGGCA
CATCGCCTGTGTGGTGGCGGGCCTGACGTCTGATGCTAACATTCTGATAA
ACCAAGGTGCGGAAAGCCAAGAGGAAAAGAGAGGAAACATTCGGGCGCGG
GTGAATCCTTAATGCTCTCTAAATTTATGCGTGCTCGTGTTCGTGAATTT
CTGTGGAATTCTTTCCTCGCTCTCTGGCCCACGCGCATTGCCCGGAAGGT
GTCGAGACAAGCTGTAGAAGAACCACACCCCTCATGATCTTCCACCCCCC
CCCCCTCCCTCCCCCTCTCTCCAGCCCGTCTGTCCGCCCAACGCTACCTG
TACCAGTACCAAGAGACCATGCCCGTCGAGCAGCTCGTGCGGTCCATCTG
CGACTACAAGCAGGCGTATACACAGTACGGAGGGCTGCGCCCTTTCGGGG
TCTCCTTCCTGTTTGCCGGCTACGACAGGTAGGAAGGACACCGCCCCCAT
CCCTCCCTCCATCCCTCCCTCCCTCCATCCCTCCCTCCCTCCCTCTTTCC
CTCCCTCCCTCCCATCTACCCTATTTTGGGGGGGCAATGCACACACGTAT
TCAGCCCTTCCTTCCTTCCCCCCTTCCCTATCCTCCTTCCCCAGGCACCA
TGGTTTCCAGCTATACGAGTCTGATCCTGCCGGGACCTTCGGGGGATGGA
CCGCCACAGCCATTGGCGCCAATTTTCAGGTATGTCTTCCTTCCCTCTCC
CTCCTTCCCTCCCTCCCTCATCCCTCCCCACCCCCTTTCGAAATGGACGC
CTCGCTTTTAGTTCCTCGTGTGGGAGTGTTTTTCCCCACAGTGCTTCAAA
CGGCCTCTTCCCTGCCTCCCTCTTTCAAGCCCGCGCTGGAGGATGGACAT
CAAAGATAATGAACAAGACGCTCCTACCACCGACTCCCCCTCCCTCTCTT
CCTCCCTCCCTCCCTCCCTAGGCCGGGAAAAATCTGTTGAAGAACGAATT
TCCGGAGGGGGACAAGCCTACGCTGGCGGAAGGTTTGAAGCTGGCGGCCA
AGGTGTTGCTTAAGACGATGGATACCACCACGCCGTCCGCGGAGAAGGTA
AGGGAGGGAGGGAAGGAGGGATGTAGGGATAAATTGACTCGACGGGGAAC
GATAGCAAGTCAACCCGGCCATGCATCGGGCACTCAACCATATCATATCT
CCCTCCCCTTTTCCCTCTAGGTGGAGTTTTTCACGCTCAAGGCCGCGGAG
AAGGTGGGGGGGAGGGTGGTTCACGCCACGCTGGGGACGGAGGAGACGAC
AGCCTTATTGAACGAGGTCAGCGCAGCCACTGCCCCTGAGGGGGACATGT
AAGGGGGGGGAGGGGAGGACGGAGAGAGGGGAGGAGGG back to topCoding sequence (CDS) from alignment at scaffold_3:138758..140545+ >mRNA_50 ID=mRNA_50|Name=jgi.p|Nanoce1779_2|576029|organism=Nannochloropsis oceanica|type=CDS|length=4590bp|location=Sequence derived from alignment at scaffold_3:138758..140545+ (Nannochloropsis oceanica)
ATGGCAAGACGCTACGATTCGTCGACCACCACGTTCTCGCCGGAAGGCCG
TCTGCATCAGGTTGAGTACGCCATTGAGGCTATCAACAACGCCGGAACCT
GCGTGGGCATCCTCTGCGCCGACGGTATAGTCCTGGCAGCGGAACGAAAG
ACCACCAGCAAGCTTCTAGCACCATCTAAGTCCAGCGACAAGATTTACCA
GATCGACGGGCACATCGCCTGTGTGGTGGCGGGCCTGACGTCTGATGCTA
ACATTCTGATAAACCAAGCCCGTCTGTCCGCCCAACGCTACCTGTACCAG
TACCAAGAGACCATGCCCGTCGAGCAGCTCGTGCGGTCCATCTGCGACTA
CAAGCAGGCGTATACACAGTACGGAGGGCTGCGCCCTTTCGGGGTCTCCT
TCCTGTTTGCCGGCTACGACAGGCACCATGGTTTCCAGCTATACGAGTCT
GATCCTGCCGGGACCTTCGGGGGATGGACCGCCACAGCCATTGGCGCCAA
TTTTCAGGCCGGGAAAAATCTGTTGAAGAACGAATTTCCGGAGGGGGACA
AGCCTACGCTGGCGGAAGGTTTGAAGCTGGCGGCCAAGGTGTTGCTTAAG
ACGATGGATACCACCACGCCGTCCGCGGAGAAGGTGGAGTTTTTCACGCT
CAAGGCCGCGGAGAAGGTGGGGGGGAGGGTGGTTCACGCCACGCTGGGGA
CGGAGGAGACGACAGCCTTATTGAACGAGGTCAGCGCAGCCACTGCCCCT
GAGGGGGACATGTAAATGGCAAGACGCTACGATTCGTCGACCACCACGTT
CTCGCCGGAAGGCCGTCTGCATCAGGTTGAGTACGCCATTGAGGCTATCA
ACAACGCCGGAACCTGCGTGGGCATCCTCTGCGCCGACGGTATAGTCCTG
GCAGCGGAACGAAAGACCACCAGCAAGCTTCTAGCACCATCTAAGTCCAG
CGACAAGATTTACCAGATCGACGGGCACATCGCCTGTGTGGTGGCGGGCC
TGACGTCTGATGCTAACATTCTGATAAACCAAGCCCGTCTGTCCGCCCAA
CGCTACCTGTACCAGTACCAAGAGACCATGCCCGTCGAGCAGCTCGTGCG
GTCCATCTGCGACTACAAGCAGGCGTATACACAGTACGGAGGGCTGCGCC
CTTTCGGGGTCTCCTTCCTGTTTGCCGGCTACGACAGGCACCATGGTTTC
CAGCTATACGAGTCTGATCCTGCCGGGACCTTCGGGGGATGGACCGCCAC
AGCCATTGGCGCCAATTTTCAGGCCGGGAAAAATCTGTTGAAGAACGAAT
TTCCGGAGGGGGACAAGCCTACGCTGGCGGAAGGTTTGAAGCTGGCGGCC
AAGGTGTTGCTTAAGACGATGGATACCACCACGCCGTCCGCGGAGAAGGT
GGAGTTTTTCACGCTCAAGGCCGCGGAGAAGGTGGGGGGGAGGGTGGTTC
ACGCCACGCTGGGGACGGAGGAGACGACAGCCTTATTGAACGAGGTCAGC
GCAGCCACTGCCCCTGAGGGGGACATGTAAATGGCAAGACGCTACGATTC
GTCGACCACCACGTTCTCGCCGGAAGGCCGTCTGCATCAGGTTGAGTACG
CCATTGAGGCTATCAACAACGCCGGAACCTGCGTGGGCATCCTCTGCGCC
GACGGTATAGTCCTGGCAGCGGAACGAAAGACCACCAGCAAGCTTCTAGC
ACCATCTAAGTCCAGCGACAAGATTTACCAGATCGACGGGCACATCGCCT
GTGTGGTGGCGGGCCTGACGTCTGATGCTAACATTCTGATAAACCAAGCC
CGTCTGTCCGCCCAACGCTACCTGTACCAGTACCAAGAGACCATGCCCGT
CGAGCAGCTCGTGCGGTCCATCTGCGACTACAAGCAGGCGTATACACAGT
ACGGAGGGCTGCGCCCTTTCGGGGTCTCCTTCCTGTTTGCCGGCTACGAC
AGGCACCATGGTTTCCAGCTATACGAGTCTGATCCTGCCGGGACCTTCGG
GGGATGGACCGCCACAGCCATTGGCGCCAATTTTCAGGCCGGGAAAAATC
TGTTGAAGAACGAATTTCCGGAGGGGGACAAGCCTACGCTGGCGGAAGGT
TTGAAGCTGGCGGCCAAGGTGTTGCTTAAGACGATGGATACCACCACGCC
GTCCGCGGAGAAGGTGGAGTTTTTCACGCTCAAGGCCGCGGAGAAGGTGG
GGGGGAGGGTGGTTCACGCCACGCTGGGGACGGAGGAGACGACAGCCTTA
TTGAACGAGGTCAGCGCAGCCACTGCCCCTGAGGGGGACATGTAAATGGC
AAGACGCTACGATTCGTCGACCACCACGTTCTCGCCGGAAGGCCGTCTGC
ATCAGGTTGAGTACGCCATTGAGGCTATCAACAACGCCGGAACCTGCGTG
GGCATCCTCTGCGCCGACGGTATAGTCCTGGCAGCGGAACGAAAGACCAC
CAGCAAGCTTCTAGCACCATCTAAGTCCAGCGACAAGATTTACCAGATCG
ACGGGCACATCGCCTGTGTGGTGGCGGGCCTGACGTCTGATGCTAACATT
CTGATAAACCAAGCCCGTCTGTCCGCCCAACGCTACCTGTACCAGTACCA
AGAGACCATGCCCGTCGAGCAGCTCGTGCGGTCCATCTGCGACTACAAGC
AGGCGTATACACAGTACGGAGGGCTGCGCCCTTTCGGGGTCTCCTTCCTG
TTTGCCGGCTACGACAGGCACCATGGTTTCCAGCTATACGAGTCTGATCC
TGCCGGGACCTTCGGGGGATGGACCGCCACAGCCATTGGCGCCAATTTTC
AGGCCGGGAAAAATCTGTTGAAGAACGAATTTCCGGAGGGGGACAAGCCT
ACGCTGGCGGAAGGTTTGAAGCTGGCGGCCAAGGTGTTGCTTAAGACGAT
GGATACCACCACGCCGTCCGCGGAGAAGGTGGAGTTTTTCACGCTCAAGG
CCGCGGAGAAGGTGGGGGGGAGGGTGGTTCACGCCACGCTGGGGACGGAG
GAGACGACAGCCTTATTGAACGAGGTCAGCGCAGCCACTGCCCCTGAGGG
GGACATGTAAATGGCAAGACGCTACGATTCGTCGACCACCACGTTCTCGC
CGGAAGGCCGTCTGCATCAGGTTGAGTACGCCATTGAGGCTATCAACAAC
GCCGGAACCTGCGTGGGCATCCTCTGCGCCGACGGTATAGTCCTGGCAGC
GGAACGAAAGACCACCAGCAAGCTTCTAGCACCATCTAAGTCCAGCGACA
AGATTTACCAGATCGACGGGCACATCGCCTGTGTGGTGGCGGGCCTGACG
TCTGATGCTAACATTCTGATAAACCAAGCCCGTCTGTCCGCCCAACGCTA
CCTGTACCAGTACCAAGAGACCATGCCCGTCGAGCAGCTCGTGCGGTCCA
TCTGCGACTACAAGCAGGCGTATACACAGTACGGAGGGCTGCGCCCTTTC
GGGGTCTCCTTCCTGTTTGCCGGCTACGACAGGCACCATGGTTTCCAGCT
ATACGAGTCTGATCCTGCCGGGACCTTCGGGGGATGGACCGCCACAGCCA
TTGGCGCCAATTTTCAGGCCGGGAAAAATCTGTTGAAGAACGAATTTCCG
GAGGGGGACAAGCCTACGCTGGCGGAAGGTTTGAAGCTGGCGGCCAAGGT
GTTGCTTAAGACGATGGATACCACCACGCCGTCCGCGGAGAAGGTGGAGT
TTTTCACGCTCAAGGCCGCGGAGAAGGTGGGGGGGAGGGTGGTTCACGCC
ACGCTGGGGACGGAGGAGACGACAGCCTTATTGAACGAGGTCAGCGCAGC
CACTGCCCCTGAGGGGGACATGTAAATGGCAAGACGCTACGATTCGTCGA
CCACCACGTTCTCGCCGGAAGGCCGTCTGCATCAGGTTGAGTACGCCATT
GAGGCTATCAACAACGCCGGAACCTGCGTGGGCATCCTCTGCGCCGACGG
TATAGTCCTGGCAGCGGAACGAAAGACCACCAGCAAGCTTCTAGCACCAT
CTAAGTCCAGCGACAAGATTTACCAGATCGACGGGCACATCGCCTGTGTG
GTGGCGGGCCTGACGTCTGATGCTAACATTCTGATAAACCAAGCCCGTCT
GTCCGCCCAACGCTACCTGTACCAGTACCAAGAGACCATGCCCGTCGAGC
AGCTCGTGCGGTCCATCTGCGACTACAAGCAGGCGTATACACAGTACGGA
GGGCTGCGCCCTTTCGGGGTCTCCTTCCTGTTTGCCGGCTACGACAGGCA
CCATGGTTTCCAGCTATACGAGTCTGATCCTGCCGGGACCTTCGGGGGAT
GGACCGCCACAGCCATTGGCGCCAATTTTCAGGCCGGGAAAAATCTGTTG
AAGAACGAATTTCCGGAGGGGGACAAGCCTACGCTGGCGGAAGGTTTGAA
GCTGGCGGCCAAGGTGTTGCTTAAGACGATGGATACCACCACGCCGTCCG
CGGAGAAGGTGGAGTTTTTCACGCTCAAGGCCGCGGAGAAGGTGGGGGGG
AGGGTGGTTCACGCCACGCTGGGGACGGAGGAGACGACAGCCTTATTGAA
CGAGGTCAGCGCAGCCACTGCCCCTGAGGGGGACATGTAA back to top
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