jgi.p|Nanoce1779_2|671182, mRNA_4999 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|671182
Unique NamemRNA_4999
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length891
Alignment locationscaffold_12:210174..211201 +

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Properties
Property NameValue
TranscriptId671268
TrackFilteredModels2
ProteinId671182
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:210174..211201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671182gene_4999Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671182mRNA_4999-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4999CDS_4999Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4999 ID=mRNA_4999|Name=jgi.p|Nanoce1779_2|671182|organism=Nannochloropsis oceanica|type=mRNA|length=891bp
GGTGAGGAGGTTTCGTTCAATGTAATTAATTCTCATTTGCCTCCCTTTAC
ATGCCTGCCACCAGGAATCCTGGTTCAGAACACGGGCAACTCCAGCAGGA
ACAATATCAGCAGGACCATCACCACCAGCCGCATCATGTCCAGCACGGAC
ACAAGAGATGCGGCGACATTCGACCTAGAGGCTCAGCTCGAGCGCTTGTC
CCTCGACTCAGACGTATACAAGGGCTATATTGAGGGCATCATGGACGACG
AGGACGGAGGGAAACTGGAAGAACGCGTGGAGTCCGTCCTGGCCTTCTTA
GAGAGTGCGACGGAGGAGGATCTTGGGGGGTTTGGAGCGGAACTAAAGAA
ACAATACGAGGTCCGACATGCAGCTGAGGCAGCACGCGCAGCGAGCGTGA
TAGACGCAGACAAGGCGGAGGAAAGGCGGCGCTATGAAGAGCGGTTGGAA
CAAGACAAGCGAGCTGCGCAAGCCGAACAGGAAAGACAGGCAGCCAATTT
GATTGAGCGGACGCAGGGAGATAAGGCCACGGCACGAGGAAGAGAGGCAT
TGCTAAATAAATATGCGTTTGGCGACGATGTGGTGGATGAGGATGGCAAC
CCTGTAGGGAAAGCAAGTAGTGGGAAGGACGGCAGTAATGAAAAGGGGGA
GGCAGATGTTCTGCTTGGAGCATTGCTAGGTGAGAACAGTAACAAGAAGC
AGGTGGAGGCGGCGGCGAGGGCGTTGCGTGAGAAGAGCAAGGCGGAACAC
GAGAAGAAGGTAATCAGAGAGAAGGAACTTCTCATAAAGGAAAAGATGAA
GAAAGAGGCCGAAAAAAGGAGGACACAGAAGAGGGAGAAACAGCGAGGCT
GTGGATGAGAAAAAGAAAGAAGAAAGCTAGCCAATAGATTG
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protein sequence of jgi.p|Nanoce1779_2|671182

>mRNA_4999-protein ID=mRNA_4999-protein|Name=jgi.p|Nanoce1779_2|671182|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MSSTDTRDAATFDLEAQLERLSLDSDVYKGYIEGIMDDEDGGKLEERVES
VLAFLESATEEDLGGFGAELKKQYEVRHAAEAARAASVIDADKAEERRRY
EERLEQDKRAAQAEQERQAANLIERTQGDKATARGREALLNKYAFGDDVV
DEDGNPVGKASSGKDGSNEKGEADVLLGALLGENSNKKQVEAAARALREK
SKAEHEKKVIREKELLIKEKMKKEAEKRRTQKREKQRGCG*
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mRNA from alignment at scaffold_12:210174..211201+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4999 ID=mRNA_4999|Name=jgi.p|Nanoce1779_2|671182|organism=Nannochloropsis oceanica|type=mRNA|length=1028bp|location=Sequence derived from alignment at scaffold_12:210174..211201+ (Nannochloropsis oceanica)
GGTGAGGAGGTTTCGTTCAATGTAATTAATTCTCATTTGCCTCCCTTTAC
ATGCCTGCCACCAGGAATCCTGGTTCAGAACACGGGCAACTCCAGCAGGA
ACAATATCAGCAGGACCATCACCACCAGCCGCATCATGTCCAGCACGGAC
ACAAGAGATGCGGCGACATTCGACCTAGAGGCTCAGCTCGAGCGCTTGTC
CCTCGACTCAGACGTATACAAGGGCTATATTGAGGGCATCATGGACGACG
AGGACGGAGGGAAACTGGAAGAACGCGTGGAGTCCGTCCTGGCCTTCTTA
GAGAGTGCGACGGAGGAGGATCTTGGGGGGTTTGGAGCGGAACTAAAGAA
ACAATACGAGGTCCGACATGCAGCTGAGGCAGCACGCGCAGCGAGCGTGA
TAGACGCAGACAAGGCGGAGGAAAGGCGGCGCTATGAAGAGCGGTTGGAA
CAAGACAAGCGAGCTGCGCAAGCCGAACAGGAAAGACAGGCAGCCAATTT
GATTGAGCGGACGCAGGGAGATAAGGCCACGGCACGAGGAAGAGAGGCAT
TGCTAAATAAATATGCGTTTGGCGACGATGTGGTGGATGAGGATGGCAAC
CCTGTAGGGAAAGCAAGTAGTGGGAAGGACGGCAGTAATGAAAAGGGGGA
GGCAGATGTTCTGCTTGGAGCATTGCTAGGTGAGAACAGTAACAAGAAGC
AGGTGGAGGCGGCGGCGAGGGCGTTGCGTGAGAAGAGCAAGGCGGAACAC
GAGAAGAAGGTAATCAGAGAGAAGGTACGCATGTCTTGCGTGTTGAATAA
AGTGGAGGTGTTCAAACACACAGTGGTGGTTTTATTTTGTGGCAAATATG
TTTTCCTTTGAAGCGCACCTCCTCTGCCCTCCCTTCCCATCACCACACAC
CTCGATGACAGGAACTTCTCATAAAGGAAAAGATGAAGAAAGAGGCCGAA
AAAAGGAGGACACAGAAGAGGGAGAAACAGCGAGGCTGTGGATGAGAAAA
AGAAAGAAGAAAGCTAGCCAATAGATTG
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Coding sequence (CDS) from alignment at scaffold_12:210174..211201+

>mRNA_4999 ID=mRNA_4999|Name=jgi.p|Nanoce1779_2|671182|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at scaffold_12:210174..211201+ (Nannochloropsis oceanica)
ATGTCCAGCACGGACACAAGAGATGCGGCGACATTCGACCTAGAGGCTCA
GCTCGAGCGCTTGTCCCTCGACTCAGACGTATACAAGGGCTATATTGAGG
GCATCATGGACGACGAGGACGGAGGGAAACTGGAAGAACGCGTGGAGTCC
GTCCTGGCCTTCTTAGAGAGTGCGACGGAGGAGGATCTTGGGGGGTTTGG
AGCGGAACTAAAGAAACAATACGAGGTCCGACATGCAGCTGAGGCAGCAC
GCGCAGCGAGCGTGATAGACGCAGACAAGGCGGAGGAAAGGCGGCGCTAT
GAAGAGCGGTTGGAACAAGACAAGCGAGCTGCGCAAGCCGAACAGGAAAG
ACAGGCAGCCAATTTGATTGAGCGGACGCAGGGAGATAAGGCCACGGCAC
GAGGAAGAGAGGCATTGCTAAATAAATATGCGTTTGGCGACGATGTGGTG
GATGAGGATGGCAACCCTGTAGGGAAAGCAAGTAGTGGGAAGGACGGCAG
TAATGAAAAGGGGGAGGCAGATGTTCTGCTTGGAGCATTGCTAGGTGAGA
ACAGTAACAAGAAGCAGGTGGAGGCGGCGGCGAGGGCGTTGCGTGAGAAG
AGCAAGGCGGAACACGAGAAGAAGGTAATCAGAGAGAAGGAACTTCTCAT
AAAGGAAAAGATGAAGAAAGAGGCCGAAAAAAGGAGGACACAGAAGAGGG
AGAAACAGCGAGGCTGTGGATGAATGTCCAGCACGGACACAAGAGATGCG
GCGACATTCGACCTAGAGGCTCAGCTCGAGCGCTTGTCCCTCGACTCAGA
CGTATACAAGGGCTATATTGAGGGCATCATGGACGACGAGGACGGAGGGA
AACTGGAAGAACGCGTGGAGTCCGTCCTGGCCTTCTTAGAGAGTGCGACG
GAGGAGGATCTTGGGGGGTTTGGAGCGGAACTAAAGAAACAATACGAGGT
CCGACATGCAGCTGAGGCAGCACGCGCAGCGAGCGTGATAGACGCAGACA
AGGCGGAGGAAAGGCGGCGCTATGAAGAGCGGTTGGAACAAGACAAGCGA
GCTGCGCAAGCCGAACAGGAAAGACAGGCAGCCAATTTGATTGAGCGGAC
GCAGGGAGATAAGGCCACGGCACGAGGAAGAGAGGCATTGCTAAATAAAT
ATGCGTTTGGCGACGATGTGGTGGATGAGGATGGCAACCCTGTAGGGAAA
GCAAGTAGTGGGAAGGACGGCAGTAATGAAAAGGGGGAGGCAGATGTTCT
GCTTGGAGCATTGCTAGGTGAGAACAGTAACAAGAAGCAGGTGGAGGCGG
CGGCGAGGGCGTTGCGTGAGAAGAGCAAGGCGGAACACGAGAAGAAGGTA
ATCAGAGAGAAGGAACTTCTCATAAAGGAAAAGATGAAGAAAGAGGCCGA
AAAAAGGAGGACACAGAAGAGGGAGAAACAGCGAGGCTGTGGATGA
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Synonyms
Publications