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Properties
| Property Name | Value |
|---|
| TranscriptId | 671267 |
| Track | FilteredModels2 |
| ProteinId | 671181 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:208352..210198 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4998 ID=mRNA_4998|Name=jgi.p|Nanoce1779_2|671181|organism=Nannochloropsis oceanica|type=mRNA|length=1249bp
TTACATTGAACGAAACCTCCTCACCCCCTCCTCGCCCATCACACTATTAC
TCCCCGTCAAGTTTCCTACAGCCACTAAGGCTACCAACCTATAAAGCACC
ATATACAGCCACAGGATCCTCAACAATGCGGCACACCAGTGAAGGGGACC
GATGGGACAACCGTGAACGGGAAAACCAGGAAATAGCATTGCTGAGGCAC
GAGGTTGCGCGTCTTCGTCGGCATGTTCCCGCTTGTAGAAGAATACCAAA
GCTGCTGGTGCTGGACTTGAATGGGCTGCTGGTACATCGAGTCTTCACAG
GCGAGGGTCCAAGGGCAGATGCTGAAGGTCCACTTCCTACGGTGACCACG
ACGTGGCGTTTGCGAAACTTTTGGGTTTACAAGCGGCCATACGTGGAAGA
CTTCTTGAGATTTTGCCTGGACAACTTCTTCGTGGGCGTGTGGACGACAG
CTTCGGCCGCAAATGCCACGTCGCTCCTGGAGGGCCTCTTGTCACCGGAG
AACATCGATAAGCTCGTGTTTCTATGGGACGGCAAGAAGTGCTCGTATAA
TGGAGAAATGGATCCCATCAAATCGGGCAAACCCATGGCTTTTAAGGAAT
TGCGGCGCCTGTGGGAAAGCAGGGAAGTGGCGGGCCTTTTTGGCCCGAAC
AACACTTTGCTAATCGATGATTCCCACTATAAGGCCTCGCTGAATCCACC
TCACACCGCCATCCACCCCGCCGCTTGGGACGATCCCGATGCCCACGCCG
ATGACGATGCCCTGGGGCCCAACGGCAGCATCCGCGCTTATTTAGAAGCA
TTAACATTGGCAGAAGGGCCAATTCCTGAGTTTGTGCGCACCACACCCTT
CGAGACCTTTATCAGGGTAAGAGATGTGGCGAAGGGGCTGGAAGAGGTGT
TGCCATCAGCAACACCGAGGAGCACGACCACGCCTGAGCAGGATTACCAT
CAGCAGCAGCATGCGTTGCAGCAACATCGATATGGCAGTGTGAACGAAGA
GGAGGACGACTACGAGGAGGACGAGATCGTGCTCGCGCCGGCCATGGCGG
GCTTGCGGATGGATTAGGGGGATAGAGGGAAGTGTGGGAGGAGATTATTT
TGACCGATTGTATCATAAAAATAAAAGCTTGTACGTTAAATATTGTCAGC
AAAGGGCTCAAAGTATCAATCATTAGATCTTCAAATTTGCCGGTTGTTTA
GATGTGCGCGGGGAGTCTTTTGTGATGCTGGCATTGCCGCTTGCAGCTT back to topprotein sequence of jgi.p|Nanoce1779_2|671181 >mRNA_4998-protein ID=mRNA_4998-protein|Name=jgi.p|Nanoce1779_2|671181|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MRHTSEGDRWDNRERENQEIALLRHEVARLRRHVPACRRIPKLLVLDLNG
LLVHRVFTGEGPRADAEGPLPTVTTTWRLRNFWVYKRPYVEDFLRFCLDN
FFVGVWTTASAANATSLLEGLLSPENIDKLVFLWDGKKCSYNGEMDPIKS
GKPMAFKELRRLWESREVAGLFGPNNTLLIDDSHYKASLNPPHTAIHPAA
WDDPDAHADDDALGPNGSIRAYLEALTLAEGPIPEFVRTTPFETFIRVRD
VAKGLEEVLPSATPRSTTTPEQDYHQQQHALQQHRYGSVNEEEDDYEEDE
IVLAPAMAGLRMD* back to topmRNA from alignment at scaffold_12:208352..210198- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4998 ID=mRNA_4998|Name=jgi.p|Nanoce1779_2|671181|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp|location=Sequence derived from alignment at scaffold_12:208352..210198- (Nannochloropsis oceanica)
TTACATTGAACGAAACCTCCTCACCCCCTCCTCGCCCATCACACTATTAC
TCCCCGTCAAGTTTCCTACAGCCACTAAGGCTACCAACCTATAAAGCACC
ATATACAGCCACAGGATCCTCAACAATGCGGCACACCAGTGAAGGGGACC
GATGGGACAACCGTGAACGGGAAAACCAGGAAATAGCATTGCTGAGGCAC
GAGGTTGCGGTGAGTTTGGTGATGCCGCTACGACATGCACACAGGCCCTG
GCATTGATCATCTTCCTCCACCCCAACATCAACCTACAGCGTCTTCGTCG
GCATGTTCCCGCTTGTAGAAGAATACCAAAGCTGCTGGTGCTGGACTTGA
ATGGGCTGCTGGTACATCGAGTCTTCACAGGCGAGGGTCCAAGGGCAGGT
GAGAGGAGGGGGGGAGAAAGGGAAAAAGGAGCATATGGGAAATGGCCATA
CTTCGAAACTTAAGTCTTGCAACGTACATACAGATGCTGAAGGTCCACTT
CCTACGGTGACCACGACGTGGCGTTTGCGAAACTTTTGGGTTTACAAGCG
GCCATACGTGGAAGACTTCTTGAGGTGAGGAACGCGGAAAGTAGAGGAGA
GGCGGGGAATTAGCTGTGAGTCTATGGTAGGCTAGAAATGATTTTCTATT
CTGACATATGTACCCTGTTTGTTCTAGATTTTGCCTGGACAACTTCTTCG
TGGGCGTGTGGACGACAGCTTCGGCCGCAAATGCCACGTCGCTCCTGGAG
GGCCTCTTGTCACCGGTGCGTGAGGAAGCAGGAAGGATGGCTGGGCTGAG
GATCTATTTTCACAGAGAGTCTAAATAAAAACAATTCACTTATTAAAAAT
ATATGTTTATATTCAATCTTAGGAGAACATCGATAAGCTCGTGTTTCTAT
GGGACGGCAAGAAGTAAGTGCGCCTGACCCTCCTTGTCTCCCTCCTTTTT
TTAATTGCCAAGACTCATCCTAATTTTTTTAATCTCATTTCCCAGGTGCT
CGTATAATGGAGAAATGGATCCCATCAAATCGGGCAAACCCATGGCTTTT
AAGGAATTGCGGCGCCTGTGGGAAAGCAGGGAAGTGGCGGGCCTTTTTGG
TACGTCTCGGGGGGGTCTACCGGACGGAGGAGGAAAGGAAAGTAACGCTT
GTTTTGCGTTCGACGGGCGTCCTCGGTCTCAGGCTTATCTTATTTTTCTC
CGTTGGCATACCTTTTATTATTTCCCCCTCAATTATACAGGCCCGAACAA
CACTTTGCTAATCGATGATTCCCACTATAAGGCCTCGCTGAATCCACCTC
ACACCGCCATCCACCCCGCCGCTTGGGACGATCCCGATGCCCACGCCGAT
GACGATGCCCTGGGGCCCAACGGCAGCATCCGCGCTTATTTAGAAGCATT
AACATTGGCAGAAGGGCCAATTCCTGAGTTTGTGCGCACCACACCCTTCG
AGACCTTTATCAGGGTAAGAGATGTGGCGAAGGGGCTGGAAGAGGTGTTG
CCATCAGCAACACCGAGGAGCACGACCACGCCTGAGCAGGATTACCATCA
GCAGCAGCATGCGTTGCAGCAACATCGATATGGCAGTGTGAACGAAGAGG
AGGACGACTACGAGGAGGACGAGATCGTGCTCGCGCCGGCCATGGCGGGC
TTGCGGATGGATTAGGGGGATAGAGGGAAGTGTGGGAGGAGATTATTTTG
ACCGATTGTATCATAAAAATAAAAGCTTGTACGTTAAATATTGTCAGCAA
AGGGCTCAAAGTATCAATCATTAGATCTTCAAATTTGCCGGTTGTTTAGA
TGTGCGCGGGGAGTCTTTTGTGATGCTGGCATTGCCGCTTGCAGCTT back to topCoding sequence (CDS) from alignment at scaffold_12:208352..210198- >mRNA_4998 ID=mRNA_4998|Name=jgi.p|Nanoce1779_2|671181|organism=Nannochloropsis oceanica|type=CDS|length=6594bp|location=Sequence derived from alignment at scaffold_12:208352..210198- (Nannochloropsis oceanica)
GCCCGAACAACACTTTGCTAATCGATGATTCCCACTATAAGGCCTCGCTG
AATCCACCTCACACCGCCATCCACCCCGCCGCTTGGGACGATCCCGATGC
CCACGCCGATGACGATGCCCTGGGGCCCAACGGCAGCATCCGCGCTTATT
TAGAAGCATTAACATTGGCAGAAGGGCCAATTCCTGAGTTTGTGCGCACC
ACACCCTTCGAGACCTTTATCAGGGTAAGAGATGTGGCGAAGGGGCTGGA
AGAGGTGTTGCCATCAGCAACACCGAGGAGCACGACCACGCCTGAGCAGG
ATTACCATCAGCAGCAGCATGCGTTGCAGCAACATCGATATGGCAGTGTG
AACGAAGAGGAGGACGACTACGAGGAGGACGAGATCGTGCTCGCGCCGGC
CATGGCGGGCTTGCGGATGGATTAGGTGCTCGTATAATGGAGAAATGGAT
CCCATCAAATCGGGCAAACCCATGGCTTTTAAGGAATTGCGGCGCCTGTG
GGAAAGCAGGGAAGTGGCGGGCCTTTTTGGAGAACATCGATAAGCTCGTG
TTTCTATGGGACGGCAAGAAATTTTGCCTGGACAACTTCTTCGTGGGCGT
GTGGACGACAGCTTCGGCCGCAAATGCCACGTCGCTCCTGGAGGGCCTCT
TGTCACCGATGCTGAAGGTCCACTTCCTACGGTGACCACGACGTGGCGTT
TGCGAAACTTTTGGGTTTACAAGCGGCCATACGTGGAAGACTTCTTGAGC
GTCTTCGTCGGCATGTTCCCGCTTGTAGAAGAATACCAAAGCTGCTGGTG
CTGGACTTGAATGGGCTGCTGGTACATCGAGTCTTCACAGGCGAGGGTCC
AAGGGCAGATGCGGCACACCAGTGAAGGGGACCGATGGGACAACCGTGAA
CGGGAAAACCAGGAAATAGCATTGCTGAGGCACGAGGTTGCGGCCCGAAC
AACACTTTGCTAATCGATGATTCCCACTATAAGGCCTCGCTGAATCCACC
TCACACCGCCATCCACCCCGCCGCTTGGGACGATCCCGATGCCCACGCCG
ATGACGATGCCCTGGGGCCCAACGGCAGCATCCGCGCTTATTTAGAAGCA
TTAACATTGGCAGAAGGGCCAATTCCTGAGTTTGTGCGCACCACACCCTT
CGAGACCTTTATCAGGGTAAGAGATGTGGCGAAGGGGCTGGAAGAGGTGT
TGCCATCAGCAACACCGAGGAGCACGACCACGCCTGAGCAGGATTACCAT
CAGCAGCAGCATGCGTTGCAGCAACATCGATATGGCAGTGTGAACGAAGA
GGAGGACGACTACGAGGAGGACGAGATCGTGCTCGCGCCGGCCATGGCGG
GCTTGCGGATGGATTAGGTGCTCGTATAATGGAGAAATGGATCCCATCAA
ATCGGGCAAACCCATGGCTTTTAAGGAATTGCGGCGCCTGTGGGAAAGCA
GGGAAGTGGCGGGCCTTTTTGGAGAACATCGATAAGCTCGTGTTTCTATG
GGACGGCAAGAAATTTTGCCTGGACAACTTCTTCGTGGGCGTGTGGACGA
CAGCTTCGGCCGCAAATGCCACGTCGCTCCTGGAGGGCCTCTTGTCACCG
ATGCTGAAGGTCCACTTCCTACGGTGACCACGACGTGGCGTTTGCGAAAC
TTTTGGGTTTACAAGCGGCCATACGTGGAAGACTTCTTGAGCGTCTTCGT
CGGCATGTTCCCGCTTGTAGAAGAATACCAAAGCTGCTGGTGCTGGACTT
GAATGGGCTGCTGGTACATCGAGTCTTCACAGGCGAGGGTCCAAGGGCAG
ATGCGGCACACCAGTGAAGGGGACCGATGGGACAACCGTGAACGGGAAAA
CCAGGAAATAGCATTGCTGAGGCACGAGGTTGCGGCCCGAACAACACTTT
GCTAATCGATGATTCCCACTATAAGGCCTCGCTGAATCCACCTCACACCG
CCATCCACCCCGCCGCTTGGGACGATCCCGATGCCCACGCCGATGACGAT
GCCCTGGGGCCCAACGGCAGCATCCGCGCTTATTTAGAAGCATTAACATT
GGCAGAAGGGCCAATTCCTGAGTTTGTGCGCACCACACCCTTCGAGACCT
TTATCAGGGTAAGAGATGTGGCGAAGGGGCTGGAAGAGGTGTTGCCATCA
GCAACACCGAGGAGCACGACCACGCCTGAGCAGGATTACCATCAGCAGCA
GCATGCGTTGCAGCAACATCGATATGGCAGTGTGAACGAAGAGGAGGACG
ACTACGAGGAGGACGAGATCGTGCTCGCGCCGGCCATGGCGGGCTTGCGG
ATGGATTAGGTGCTCGTATAATGGAGAAATGGATCCCATCAAATCGGGCA
AACCCATGGCTTTTAAGGAATTGCGGCGCCTGTGGGAAAGCAGGGAAGTG
GCGGGCCTTTTTGGAGAACATCGATAAGCTCGTGTTTCTATGGGACGGCA
AGAAATTTTGCCTGGACAACTTCTTCGTGGGCGTGTGGACGACAGCTTCG
GCCGCAAATGCCACGTCGCTCCTGGAGGGCCTCTTGTCACCGATGCTGAA
GGTCCACTTCCTACGGTGACCACGACGTGGCGTTTGCGAAACTTTTGGGT
TTACAAGCGGCCATACGTGGAAGACTTCTTGAGCGTCTTCGTCGGCATGT
TCCCGCTTGTAGAAGAATACCAAAGCTGCTGGTGCTGGACTTGAATGGGC
TGCTGGTACATCGAGTCTTCACAGGCGAGGGTCCAAGGGCAGATGCGGCA
CACCAGTGAAGGGGACCGATGGGACAACCGTGAACGGGAAAACCAGGAAA
TAGCATTGCTGAGGCACGAGGTTGCGGCCCGAACAACACTTTGCTAATCG
ATGATTCCCACTATAAGGCCTCGCTGAATCCACCTCACACCGCCATCCAC
CCCGCCGCTTGGGACGATCCCGATGCCCACGCCGATGACGATGCCCTGGG
GCCCAACGGCAGCATCCGCGCTTATTTAGAAGCATTAACATTGGCAGAAG
GGCCAATTCCTGAGTTTGTGCGCACCACACCCTTCGAGACCTTTATCAGG
GTAAGAGATGTGGCGAAGGGGCTGGAAGAGGTGTTGCCATCAGCAACACC
GAGGAGCACGACCACGCCTGAGCAGGATTACCATCAGCAGCAGCATGCGT
TGCAGCAACATCGATATGGCAGTGTGAACGAAGAGGAGGACGACTACGAG
GAGGACGAGATCGTGCTCGCGCCGGCCATGGCGGGCTTGCGGATGGATTA
GGTGCTCGTATAATGGAGAAATGGATCCCATCAAATCGGGCAAACCCATG
GCTTTTAAGGAATTGCGGCGCCTGTGGGAAAGCAGGGAAGTGGCGGGCCT
TTTTGGAGAACATCGATAAGCTCGTGTTTCTATGGGACGGCAAGAAATTT
TGCCTGGACAACTTCTTCGTGGGCGTGTGGACGACAGCTTCGGCCGCAAA
TGCCACGTCGCTCCTGGAGGGCCTCTTGTCACCGATGCTGAAGGTCCACT
TCCTACGGTGACCACGACGTGGCGTTTGCGAAACTTTTGGGTTTACAAGC
GGCCATACGTGGAAGACTTCTTGAGCGTCTTCGTCGGCATGTTCCCGCTT
GTAGAAGAATACCAAAGCTGCTGGTGCTGGACTTGAATGGGCTGCTGGTA
CATCGAGTCTTCACAGGCGAGGGTCCAAGGGCAGATGCGGCACACCAGTG
AAGGGGACCGATGGGACAACCGTGAACGGGAAAACCAGGAAATAGCATTG
CTGAGGCACGAGGTTGCGGCCCGAACAACACTTTGCTAATCGATGATTCC
CACTATAAGGCCTCGCTGAATCCACCTCACACCGCCATCCACCCCGCCGC
TTGGGACGATCCCGATGCCCACGCCGATGACGATGCCCTGGGGCCCAACG
GCAGCATCCGCGCTTATTTAGAAGCATTAACATTGGCAGAAGGGCCAATT
CCTGAGTTTGTGCGCACCACACCCTTCGAGACCTTTATCAGGGTAAGAGA
TGTGGCGAAGGGGCTGGAAGAGGTGTTGCCATCAGCAACACCGAGGAGCA
CGACCACGCCTGAGCAGGATTACCATCAGCAGCAGCATGCGTTGCAGCAA
CATCGATATGGCAGTGTGAACGAAGAGGAGGACGACTACGAGGAGGACGA
GATCGTGCTCGCGCCGGCCATGGCGGGCTTGCGGATGGATTAGGTGCTCG
TATAATGGAGAAATGGATCCCATCAAATCGGGCAAACCCATGGCTTTTAA
GGAATTGCGGCGCCTGTGGGAAAGCAGGGAAGTGGCGGGCCTTTTTGGAG
AACATCGATAAGCTCGTGTTTCTATGGGACGGCAAGAAATTTTGCCTGGA
CAACTTCTTCGTGGGCGTGTGGACGACAGCTTCGGCCGCAAATGCCACGT
CGCTCCTGGAGGGCCTCTTGTCACCGATGCTGAAGGTCCACTTCCTACGG
TGACCACGACGTGGCGTTTGCGAAACTTTTGGGTTTACAAGCGGCCATAC
GTGGAAGACTTCTTGAGCGTCTTCGTCGGCATGTTCCCGCTTGTAGAAGA
ATACCAAAGCTGCTGGTGCTGGACTTGAATGGGCTGCTGGTACATCGAGT
CTTCACAGGCGAGGGTCCAAGGGCAGATGCGGCACACCAGTGAAGGGGAC
CGATGGGACAACCGTGAACGGGAAAACCAGGAAATAGCATTGCTGAGGCA
CGAGGTTGCGGCCCGAACAACACTTTGCTAATCGATGATTCCCACTATAA
GGCCTCGCTGAATCCACCTCACACCGCCATCCACCCCGCCGCTTGGGACG
ATCCCGATGCCCACGCCGATGACGATGCCCTGGGGCCCAACGGCAGCATC
CGCGCTTATTTAGAAGCATTAACATTGGCAGAAGGGCCAATTCCTGAGTT
TGTGCGCACCACACCCTTCGAGACCTTTATCAGGGTAAGAGATGTGGCGA
AGGGGCTGGAAGAGGTGTTGCCATCAGCAACACCGAGGAGCACGACCACG
CCTGAGCAGGATTACCATCAGCAGCAGCATGCGTTGCAGCAACATCGATA
TGGCAGTGTGAACGAAGAGGAGGACGACTACGAGGAGGACGAGATCGTGC
TCGCGCCGGCCATGGCGGGCTTGCGGATGGATTAGGTGCTCGTATAATGG
AGAAATGGATCCCATCAAATCGGGCAAACCCATGGCTTTTAAGGAATTGC
GGCGCCTGTGGGAAAGCAGGGAAGTGGCGGGCCTTTTTGGAGAACATCGA
TAAGCTCGTGTTTCTATGGGACGGCAAGAAATTTTGCCTGGACAACTTCT
TCGTGGGCGTGTGGACGACAGCTTCGGCCGCAAATGCCACGTCGCTCCTG
GAGGGCCTCTTGTCACCGATGCTGAAGGTCCACTTCCTACGGTGACCACG
ACGTGGCGTTTGCGAAACTTTTGGGTTTACAAGCGGCCATACGTGGAAGA
CTTCTTGAGCGTCTTCGTCGGCATGTTCCCGCTTGTAGAAGAATACCAAA
GCTGCTGGTGCTGGACTTGAATGGGCTGCTGGTACATCGAGTCTTCACAG
GCGAGGGTCCAAGGGCAGATGCGGCACACCAGTGAAGGGGACCGATGGGA
CAACCGTGAACGGGAAAACCAGGAAATAGCATTGCTGAGGCACGAGGTTG
CGGCCCGAACAACACTTTGCTAATCGATGATTCCCACTATAAGGCCTCGC
TGAATCCACCTCACACCGCCATCCACCCCGCCGCTTGGGACGATCCCGAT
GCCCACGCCGATGACGATGCCCTGGGGCCCAACGGCAGCATCCGCGCTTA
TTTAGAAGCATTAACATTGGCAGAAGGGCCAATTCCTGAGTTTGTGCGCA
CCACACCCTTCGAGACCTTTATCAGGGTAAGAGATGTGGCGAAGGGGCTG
GAAGAGGTGTTGCCATCAGCAACACCGAGGAGCACGACCACGCCTGAGCA
GGATTACCATCAGCAGCAGCATGCGTTGCAGCAACATCGATATGGCAGTG
TGAACGAAGAGGAGGACGACTACGAGGAGGACGAGATCGTGCTCGCGCCG
GCCATGGCGGGCTTGCGGATGGATTAGGTGCTCGTATAATGGAGAAATGG
ATCCCATCAAATCGGGCAAACCCATGGCTTTTAAGGAATTGCGGCGCCTG
TGGGAAAGCAGGGAAGTGGCGGGCCTTTTTGGAGAACATCGATAAGCTCG
TGTTTCTATGGGACGGCAAGAAATTTTGCCTGGACAACTTCTTCGTGGGC
GTGTGGACGACAGCTTCGGCCGCAAATGCCACGTCGCTCCTGGAGGGCCT
CTTGTCACCGATGCTGAAGGTCCACTTCCTACGGTGACCACGACGTGGCG
TTTGCGAAACTTTTGGGTTTACAAGCGGCCATACGTGGAAGACTTCTTGA
GCGTCTTCGTCGGCATGTTCCCGCTTGTAGAAGAATACCAAAGCTGCTGG
TGCTGGACTTGAATGGGCTGCTGGTACATCGAGTCTTCACAGGCGAGGGT
CCAAGGGCAGATGCGGCACACCAGTGAAGGGGACCGATGGGACAACCGTG
AACGGGAAAACCAGGAAATAGCATTGCTGAGGCACGAGGTTGCG back to top
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