jgi.p|Nanoce1779_2|591038, mRNA_4997 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591038
Unique NamemRNA_4997
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1601
Alignment locationscaffold_12:206622..208222 -

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Properties
Property NameValue
TranscriptId591124
TrackFilteredModels2
ProteinId591038
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:206622..208222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591038gene_4997Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591038mRNA_4997-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4997CDS_4997Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4997 ID=mRNA_4997|Name=jgi.p|Nanoce1779_2|591038|organism=Nannochloropsis oceanica|type=mRNA|length=1601bp
ACAGGCTGTAATCTTTGCTTCCGTCGCAAGTCCTCATTCCTTGCTCTTCT
CACCATCCTTTCAGCCAAGTGGTAGCAGTTTCCTCCTTCACCCACTCACG
CGTCTCGTTCCTCCCTCACGGCGACCAGCTTGTCCTCTTTACACACAACA
CGTGATGCGCCGGCTGGTGGAGATTCCATGGCTTGATGAGCATATTGGCA
CATGCACCTCGGGGAGCGACCTGGAACCGCGGCGCCGGTCCATTTTCTAC
AAGCTGCCACCCTACGTGCGAAACGTGGACTTGACCCGTGAGGTGATTGT
CGTCTCGAATCCCGACGTCACCCCTTTGGATCTTGGGGGGCACTACTTGT
GTGATAAGGATAACCATCGCTTCGAGTTTGAGGATGCTTATGTGCTGGCA
CCTGGCGCGGACGTGCATGTCTACATGTGTCCAGGCAAGCATCCCGTGAC
GGAGGAGGAGCAGCCGGGAAAGTTGCAGATTGTGTTATGGCAAACAAAAG
ACAACAAGCCCCGGCGACGCGAGATACTCGATTCAGCGGGTGACAAGATC
ACATTGATAGACGCGAATGGAGTGGAGATTGCCGCGTTGGAAGTGACGGC
AGCGCCGCGAGTCGAGGGCGAGGAGGTAGAAGAGGACAACGGAACCGCAG
GGCCAGAAGGCACCAAGCGGCTTTATCTCTACAGTCTTAACTTGCTCCAG
ATCAAGTACGCCAAGAAATTTGTGACATTTCTGCAAGGTGCACGTCTGGC
GGGGATGGTCCTGGGTTTCATGCTCGTGCTTACCAACAACCTGCCTGCCT
ATGTGGTTCTCGAACTTCTGGCTCTCCTGCTGGACCTCGCGGCGCGGTAC
ATCGATCCTTTGCGTCACCCTCGCAGCAGGCAGCGTGTCTTCGCTTTGAT
CGCTGATCGCTTGGAATCCGCGAGCCTGCTTGTTGTTCTCATGACGGGCG
TCTTGGAGGAAGGCGAAAGTTACTACTACGCGCCTAGCCCGATAAGTCGT
GTCCGTCTCGGGGCCGGCATGCTGCTGGTCGACCTTTTGTCGTCCTGGTT
CGAAGTCCTTGTGGAGAGCTCCACGCGCATGGTCATGGCAGCCAGTGATG
CCGCAACCCCTTTCTGGAAACAAGCCTCCAAACCCCAAGCTGAAGAAGCA
ATGGCCGTCCAAAGCGGTCCCTATCGAAAATGGCTCCGACACTACCTACA
ACGTGCTCCCTGGCTGGTCACCCTGATCACAGGCGGCAATCACCTGTTCC
TCCTCTTGGCCGTAGCCCGGCTTGCACAGGCAGTGGAGGGGGATGGACAA
TGGTGGATCACGCAGGGGCTACTTGCCGCTGATCGACTCTTTACCGTTGT
ACCTCTGCCTGGGTATATGAAGACTTGTTGGAATGTGCTCATCCCTGCGA
TGTGTGCCGCGACGGTGTATCGCGTGTTGTTGGTGTGGACGGAGTTGATG
GATTTGATTGAAAGCAAGGTGTGATGGAAGGATGGAGGTAAGAATCTCGG
TGTGGAGTGCGTAAGAGCTTGGAAGGGGATTTGGAGAATGGAAAGGCTGA
GCTGAAAATAGTGCGATCACGAAGTCAGGCAGTGAAAAAATGCTACAGTG
C
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protein sequence of jgi.p|Nanoce1779_2|591038

>mRNA_4997-protein ID=mRNA_4997-protein|Name=jgi.p|Nanoce1779_2|591038|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MRRLVEIPWLDEHIGTCTSGSDLEPRRRSIFYKLPPYVRNVDLTREVIVV
SNPDVTPLDLGGHYLCDKDNHRFEFEDAYVLAPGADVHVYMCPGKHPVTE
EEQPGKLQIVLWQTKDNKPRRREILDSAGDKITLIDANGVEIAALEVTAA
PRVEGEEVEEDNGTAGPEGTKRLYLYSLNLLQIKYAKKFVTFLQGARLAG
MVLGFMLVLTNNLPAYVVLELLALLLDLAARYIDPLRHPRSRQRVFALIA
DRLESASLLVVLMTGVLEEGESYYYAPSPISRVRLGAGMLLVDLLSSWFE
VLVESSTRMVMAASDAATPFWKQASKPQAEEAMAVQSGPYRKWLRHYLQR
APWLVTLITGGNHLFLLLAVARLAQAVEGDGQWWITQGLLAADRLFTVVP
LPGYMKTCWNVLIPAMCAATVYRVLLVWTELMDLIESKV*
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mRNA from alignment at scaffold_12:206622..208222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4997 ID=mRNA_4997|Name=jgi.p|Nanoce1779_2|591038|organism=Nannochloropsis oceanica|type=mRNA|length=1601bp|location=Sequence derived from alignment at scaffold_12:206622..208222- (Nannochloropsis oceanica)
ACAGGCTGTAATCTTTGCTTCCGTCGCAAGTCCTCATTCCTTGCTCTTCT
CACCATCCTTTCAGCCAAGTGGTAGCAGTTTCCTCCTTCACCCACTCACG
CGTCTCGTTCCTCCCTCACGGCGACCAGCTTGTCCTCTTTACACACAACA
CGTGATGCGCCGGCTGGTGGAGATTCCATGGCTTGATGAGCATATTGGCA
CATGCACCTCGGGGAGCGACCTGGAACCGCGGCGCCGGTCCATTTTCTAC
AAGCTGCCACCCTACGTGCGAAACGTGGACTTGACCCGTGAGGTGATTGT
CGTCTCGAATCCCGACGTCACCCCTTTGGATCTTGGGGGGCACTACTTGT
GTGATAAGGATAACCATCGCTTCGAGTTTGAGGATGCTTATGTGCTGGCA
CCTGGCGCGGACGTGCATGTCTACATGTGTCCAGGCAAGCATCCCGTGAC
GGAGGAGGAGCAGCCGGGAAAGTTGCAGATTGTGTTATGGCAAACAAAAG
ACAACAAGCCCCGGCGACGCGAGATACTCGATTCAGCGGGTGACAAGATC
ACATTGATAGACGCGAATGGAGTGGAGATTGCCGCGTTGGAAGTGACGGC
AGCGCCGCGAGTCGAGGGCGAGGAGGTAGAAGAGGACAACGGAACCGCAG
GGCCAGAAGGCACCAAGCGGCTTTATCTCTACAGTCTTAACTTGCTCCAG
ATCAAGTACGCCAAGAAATTTGTGACATTTCTGCAAGGTGCACGTCTGGC
GGGGATGGTCCTGGGTTTCATGCTCGTGCTTACCAACAACCTGCCTGCCT
ATGTGGTTCTCGAACTTCTGGCTCTCCTGCTGGACCTCGCGGCGCGGTAC
ATCGATCCTTTGCGTCACCCTCGCAGCAGGCAGCGTGTCTTCGCTTTGAT
CGCTGATCGCTTGGAATCCGCGAGCCTGCTTGTTGTTCTCATGACGGGCG
TCTTGGAGGAAGGCGAAAGTTACTACTACGCGCCTAGCCCGATAAGTCGT
GTCCGTCTCGGGGCCGGCATGCTGCTGGTCGACCTTTTGTCGTCCTGGTT
CGAAGTCCTTGTGGAGAGCTCCACGCGCATGGTCATGGCAGCCAGTGATG
CCGCAACCCCTTTCTGGAAACAAGCCTCCAAACCCCAAGCTGAAGAAGCA
ATGGCCGTCCAAAGCGGTCCCTATCGAAAATGGCTCCGACACTACCTACA
ACGTGCTCCCTGGCTGGTCACCCTGATCACAGGCGGCAATCACCTGTTCC
TCCTCTTGGCCGTAGCCCGGCTTGCACAGGCAGTGGAGGGGGATGGACAA
TGGTGGATCACGCAGGGGCTACTTGCCGCTGATCGACTCTTTACCGTTGT
ACCTCTGCCTGGGTATATGAAGACTTGTTGGAATGTGCTCATCCCTGCGA
TGTGTGCCGCGACGGTGTATCGCGTGTTGTTGGTGTGGACGGAGTTGATG
GATTTGATTGAAAGCAAGGTGTGATGGAAGGATGGAGGTAAGAATCTCGG
TGTGGAGTGCGTAAGAGCTTGGAAGGGGATTTGGAGAATGGAAAGGCTGA
GCTGAAAATAGTGCGATCACGAAGTCAGGCAGTGAAAAAATGCTACAGTG
C
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Coding sequence (CDS) from alignment at scaffold_12:206622..208222-

>mRNA_4997 ID=mRNA_4997|Name=jgi.p|Nanoce1779_2|591038|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_12:206622..208222- (Nannochloropsis oceanica)
ATGCGCCGGCTGGTGGAGATTCCATGGCTTGATGAGCATATTGGCACATG
CACCTCGGGGAGCGACCTGGAACCGCGGCGCCGGTCCATTTTCTACAAGC
TGCCACCCTACGTGCGAAACGTGGACTTGACCCGTGAGGTGATTGTCGTC
TCGAATCCCGACGTCACCCCTTTGGATCTTGGGGGGCACTACTTGTGTGA
TAAGGATAACCATCGCTTCGAGTTTGAGGATGCTTATGTGCTGGCACCTG
GCGCGGACGTGCATGTCTACATGTGTCCAGGCAAGCATCCCGTGACGGAG
GAGGAGCAGCCGGGAAAGTTGCAGATTGTGTTATGGCAAACAAAAGACAA
CAAGCCCCGGCGACGCGAGATACTCGATTCAGCGGGTGACAAGATCACAT
TGATAGACGCGAATGGAGTGGAGATTGCCGCGTTGGAAGTGACGGCAGCG
CCGCGAGTCGAGGGCGAGGAGGTAGAAGAGGACAACGGAACCGCAGGGCC
AGAAGGCACCAAGCGGCTTTATCTCTACAGTCTTAACTTGCTCCAGATCA
AGTACGCCAAGAAATTTGTGACATTTCTGCAAGGTGCACGTCTGGCGGGG
ATGGTCCTGGGTTTCATGCTCGTGCTTACCAACAACCTGCCTGCCTATGT
GGTTCTCGAACTTCTGGCTCTCCTGCTGGACCTCGCGGCGCGGTACATCG
ATCCTTTGCGTCACCCTCGCAGCAGGCAGCGTGTCTTCGCTTTGATCGCT
GATCGCTTGGAATCCGCGAGCCTGCTTGTTGTTCTCATGACGGGCGTCTT
GGAGGAAGGCGAAAGTTACTACTACGCGCCTAGCCCGATAAGTCGTGTCC
GTCTCGGGGCCGGCATGCTGCTGGTCGACCTTTTGTCGTCCTGGTTCGAA
GTCCTTGTGGAGAGCTCCACGCGCATGGTCATGGCAGCCAGTGATGCCGC
AACCCCTTTCTGGAAACAAGCCTCCAAACCCCAAGCTGAAGAAGCAATGG
CCGTCCAAAGCGGTCCCTATCGAAAATGGCTCCGACACTACCTACAACGT
GCTCCCTGGCTGGTCACCCTGATCACAGGCGGCAATCACCTGTTCCTCCT
CTTGGCCGTAGCCCGGCTTGCACAGGCAGTGGAGGGGGATGGACAATGGT
GGATCACGCAGGGGCTACTTGCCGCTGATCGACTCTTTACCGTTGTACCT
CTGCCTGGGTATATGAAGACTTGTTGGAATGTGCTCATCCCTGCGATGTG
TGCCGCGACGGTGTATCGCGTGTTGTTGGTGTGGACGGAGTTGATGGATT
TGATTGAAAGCAAGGTGTGA
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Synonyms
Publications