jgi.p|Nanoce1779_2|50412, mRNA_4996 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|50412
Unique Name	mRNA_4996
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1708
Alignment location	scaffold_12:203435..205590 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	50498
Track	FilteredModels2
ProteinId	50412

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:203435..205590 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|50412	gene_4996	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|50412	mRNA_4996-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4996	CDS_4996	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:203435..205590+
coding sequence from alignment at scaffold_12:203435..205590+

mRNA sequence

>mRNA_4996 ID=mRNA_4996|Name=jgi.p|Nanoce1779_2|50412|organism=Nannochloropsis oceanica|type=mRNA|length=1708bp
ACACGACAAGCAACCAGCACGAGTAGTCTTGGCCCGGTCTTGTCGGGTCG
TTTCCTTGGCTTGACTTTATAGCCTCCCCTTGGTTGACATTGCACCATCT
TAATCTAGACCTGAACCAAAACAACGACAAGCCAAGCACACGTCCAAACC
AATGACTGTCAACCACGACGTGCTGTGGGAGCTCCAGCGCCAGTACGCAC
GTGGAGATCCTATTCGTCGCCGCAGCAGTGTCTCATCCCCACTTAAGCAA
CTCATTCGTTCCACTCATGCACACGAACACAGGCGGAGAGACGGAGACGA
AGACGATGGCCTCAACGAGCAGCAGCACGACTGGCATTAGGCCCCGTGCC
ACGAGCAGGCCTGGTAGCAGTAGTAGCAGCACAATGAGCAGTTCTAGCAA
TGTCAGGAAGCCCACACCTGAAAAAGTTGGCCGCAAGTTCATTTTAGCAT
ACTATCCCGTCATGTCCAAAAGTGCGGAGGAGCTCATCAAGTTCTACAAG
GAGGATTCCTCCTTCTCTCATACTAACATAGCGGAAGTCACCGAGGGCCA
AGACAACAAACCCGCCTACGGCCTCGACCAAATCCGGGCCCGCATCGATG
CTCTGGATCTGGGCGGGGCCGTCGTAGACATTACGAGTGTGGACGTGCAG
TCCTCAAAAGACGGCGCTGTCCTCATCCTCGTCCAAGGCGTCATGACCCG
GCGTGGTGGCAAGCCGCCTCGTGCTTTCGTGCAAACCTTCTTCCTGGCCC
AGCAGGAGAACAACGAGACGCATTACTATCTGCTCAACGACGTGTTCCGT
ACGTTGGAAGAGCCGCCTGTGACCACGCGCTCTCCTACTCCTACCCCACC
AGCAGCCATCTCCTTATCATCCTCTATTGTCAAAACGGCCGCTGGGGCCG
CGTCTGTTTCCCTGTCCCCCAAATGTGAAACGGTGGCGGTCGTTCAAGAG
GAAGGAGACAAAGAAAGGAAGGAGGGGGGGCAGGATATGGGAGCGGAAGG
AGAAGAGCAACAGTTGCAGGAGCAGCAGCAACAGCAAACATTGCAGAGAA
AGATTGAGGAAGGGGAAGGAGCATTGGCGATGAACGGCATAAGGGAGGAA
GCTCAAGGGAAGAAGAAGGATAAGAAGAAGAAGGCTGTGGAGGAGAGAGG
CCTTTCCCCTGAAGCTTCATCTTTCACTACCTCCTCATCTTCTACTGGCG
ATCCTCCCTTGGTGCCTGTGGCTACGCACACGCCTCCTCTGCTAGTGGGG
GAGGCCGCGCCGCCGCCTCAGCAGCAGCAGCAACCGCAAGGGGTGGAGAA
GGAGAAGGGTAATGTGGTGGAGCATAAGCATCAAAAGCAGCAAAAGGATG
ACTCTGGGAGAAGAGAAAGTGGCCCATCTGCTGCTGCTGCTCCTGCTGCT
CCTGCTGCTGCTCCTGCTGCTGCTCCTGCTCATACACTTGCTCCTTTATC
CGGCCCTCCACCGAGCTGGAGCGCAATTGTAGGGAAGAAGGGCGAGGAAG
AGGATACGGGGTAGAGGCAGGGGCGACAGTCCAGCACACAGCCGTGGTGG
GTCCTCTTCTCCCTCGAAAAAGGGACGCAGGGAAGGCGGAGCAGGAGGTA
GAGAAGGTGGGCAAGTATACGTGCATGGGTCAGCCGGCGTTGGTGCTGGT
GCTGCTGGTGGTGTGGGTTTGGACGAGCCACCGACTGCGGTGTACGTGAA
ATGTAAAG

protein sequence of jgi.p|Nanoce1779_2|50412

>mRNA_4996-protein ID=mRNA_4996-protein|Name=jgi.p|Nanoce1779_2|50412|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MHTNTGGETETKTMASTSSSTTGIRPRATSRPGSSSSSTMSSSSNVRKPT
PEKVGRKFILAYYPVMSKSAEELIKFYKEDSSFSHTNIAEVTEGQDNKPA
YGLDQIRARIDALDLGGAVVDITSVDVQSSKDGAVLILVQGVMTRRGGKP
PRAFVQTFFLAQQENNETHYYLLNDVFRTLEEPPVTTRSPTPTPPAAISL
SSSIVKTAAGAASVSLSPKCETVAVVQEEGDKERKEGGQDMGAEGEEQQL
QEQQQQQTLQRKIEEGEGALAMNGIREEAQGKKKDKKKKAVEERGLSPEA
SSFTTSSSSTGDPPLVPVATHTPPLLVGEAAPPPQQQQQPQGVEKEKGNV
VEHKHQKQQKDDSGRRESGPSAAAAPAAPAAAPAAAPAHTLAPLSGPPPS
WSAIVGKKGEEEDTG*

mRNA from alignment at scaffold_12:203435..205590+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4996 ID=mRNA_4996|Name=jgi.p|Nanoce1779_2|50412|organism=Nannochloropsis oceanica|type=mRNA|length=2156bp|location=Sequence derived from alignment at scaffold_12:203435..205590+ (Nannochloropsis oceanica)
ACACGACAAGCAACCAGCACGAGTAGTCTTGGCCCGGTCTTGTCGGGTCG
TTTCCTTGGCTTGACTTTATAGCCTCCCCTTGGTTGACATTGCACCATCT
TAATCTAGACCTGAACCAAAACAACGACAAGCCAAGCACACGTCCAAACC
AATGACTGTCAACCACGACGTGCTGTGGGAGCTCCAGCGCCAGTACGCAC
GTGGAGATCCTATTCGTCGCCGCAGCAGTGTCTCATCCCCACTTAAGCAA
CTCATTCGTTCCACTCATGCACACGAACACAGGCGGAGAGACGGAGACGA
AGACGATGGCCTCAACGAGCAGCAGCACGACTGGCATTAGGCCCCGTGCC
ACGAGCAGGCCTGGTAGCAGTAGTAGCAGCACAATGAGCAGTTCTAGCAA
TGTCAGGAAGCCCACACCTGAAAAAGTTGGCCGCAAGTTAGTAACAAGTC
TCTCCCTTTGCATCCTAAATTTGTTTCCTTTTCCTCATTCAAGAGCATCA
AATATTCACCATCAAACAGTCAATGCACTTCTCATTTTCTAACCGTGCTC
ATTCTACATTTTGAAGGTTCATTTTAGCATACTATCCCGTCATGTCCAAA
AGTGCGGAGGAGCTCATCAAGTTCTACAAGGAGGATTCCTCCTTCTCTCA
TACTAACATAGCGGAAGGTACGTCGTAGACTCGACTTTAGCAAAGAAGGG
GAATAGGAGTAGGAGAGTAAAGGATCAGGAAGATAGATTTGTTTTGACGT
CTTTTCGTTTTTGCTCAGGCTGATGACTTGTCTGCTAACATGCCTGTCGT
CTCTGATACTTCTTTTCTCTTACTGATACTTTCCCCCTTTTGTGTATTTT
ACCCCATTTTCTCTGCAACTTGTGAAAATTTCTCCTGTCACCTTCCCTTT
CTCTTATCCCCATCAAAACCTCTACTCTCAAGTCACCGAGGGCCAAGACA
ACAAACCCGCCTACGGCCTCGACCAAATCCGGGCCCGCATCGATGCTCTG
GATCTGGGCGGGGCCGTCGTAGACATTACGAGTGTGGACGTGCAGTCCTC
AAAAGACGGCGCTGTCCTCATCCTCGTCCAAGGCGTCATGACCCGGCGTG
GTGGCAAGCCGCCTCGTGCTTTCGTGCAAACCTTCTTCCTGGCCCAGCAG
GAGAACAACGAGACGCATTACTATCTGCTCAACGACGTGTTCCGTACGTT
GGAAGAGCCGCCTGTGACCACGCGCTCTCCTACTCCTACCCCACCAGCAG
CCATCTCCTTATCATCCTCTATTGTCAAAACGGCCGCTGGGGCCGCGTCT
GTTTCCCTGTCCCCCAAATGTGAAACGGTGGCGGTCGTTCAAGAGGAAGG
AGACAAAGAAAGGAAGGAGGGGGGGCAGGATATGGGAGCGGAAGGAGAAG
AGCAACAGTTGCAGGAGCAGCAGCAACAGCAAACATTGCAGAGAAAGATT
GAGGAAGGGGAAGGAGCATTGGCGATGAACGGCATAAGGGAGGAAGCTCA
AGGGAAGAAGAAGGATAAGAAGAAGAAGGCTGTGGAGGAGAGAGGCCTTT
CCCCTGAAGCTTCATCTTTCACTACCTCCTCATCTTCTACTGGCGATCCT
CCCTTGGTGCCTGTGGCTACGCACACGCCTCCTCTGCTAGTGGGGGAGGC
CGCGCCGCCGCCTCAGCAGCAGCAGCAACCGCAAGGGGTGGAGAAGGAGA
AGGGTAATGTGGTGGAGCATAAGCATCAAAAGCAGCAAAAGGATGACTCT
GGGAGAAGAGAAAGTGGCCCATCTGCTGCTGCTGCTCCTGCTGCTCCTGC
TGCTGCTCCTGCTGCTGCTCCTGCTCATACACTTGCTCCTTTATCCGGCC
CTCCACCGAGCTGGAGCGCAATTGTAGGGAAGAAGGGCGAGGAAGAGGAG
CATAGAGAAGTGAAGATCAGCGGCAGTAGCAGCAGCAGCAGGTCGGGCGG
AGTACGGGGTAGAGGCAGGGGCGACAGTCCAGCACACAGCCGTGGTGGGT
CCTCTTCTCCCTCGAAAAAGGGACGCAGGGAAGGCGGAGCAGGAGGTAGA
GAAGGTGGGCAAGTATACGTGCATGGGTCAGCCGGCGTTGGTGCTGGTGC
TGCTGGTGGTGTGGGTTTGGACGAGCCACCGACTGCGGTGTACGTGAAAT
GTAAAG

Coding sequence (CDS) from alignment at scaffold_12:203435..205590+

>mRNA_4996 ID=mRNA_4996|Name=jgi.p|Nanoce1779_2|50412|organism=Nannochloropsis oceanica|type=CDS|length=4992bp|location=Sequence derived from alignment at scaffold_12:203435..205590+ (Nannochloropsis oceanica)
ATGCACACGAACACAGGCGGAGAGACGGAGACGAAGACGATGGCCTCAAC
GAGCAGCAGCACGACTGGCATTAGGCCCCGTGCCACGAGCAGGCCTGGTA
GCAGTAGTAGCAGCACAATGAGCAGTTCTAGCAATGTCAGGAAGCCCACA
CCTGAAAAAGTTGGCCGCAAGTTCATTTTAGCATACTATCCCGTCATGTC
CAAAAGTGCGGAGGAGCTCATCAAGTTCTACAAGGAGGATTCCTCCTTCT
CTCATACTAACATAGCGGAAGTCACCGAGGGCCAAGACAACAAACCCGCC
TACGGCCTCGACCAAATCCGGGCCCGCATCGATGCTCTGGATCTGGGCGG
GGCCGTCGTAGACATTACGAGTGTGGACGTGCAGTCCTCAAAAGACGGCG
CTGTCCTCATCCTCGTCCAAGGCGTCATGACCCGGCGTGGTGGCAAGCCG
CCTCGTGCTTTCGTGCAAACCTTCTTCCTGGCCCAGCAGGAGAACAACGA
GACGCATTACTATCTGCTCAACGACGTGTTCCGTACGTTGGAAGAGCCGC
CTGTGACCACGCGCTCTCCTACTCCTACCCCACCAGCAGCCATCTCCTTA
TCATCCTCTATTGTCAAAACGGCCGCTGGGGCCGCGTCTGTTTCCCTGTC
CCCCAAATGTGAAACGGTGGCGGTCGTTCAAGAGGAAGGAGACAAAGAAA
GGAAGGAGGGGGGGCAGGATATGGGAGCGGAAGGAGAAGAGCAACAGTTG
CAGGAGCAGCAGCAACAGCAAACATTGCAGAGAAAGATTGAGGAAGGGGA
AGGAGCATTGGCGATGAACGGCATAAGGGAGGAAGCTCAAGGGAAGAAGA
AGGATAAGAAGAAGAAGGCTGTGGAGGAGAGAGGCCTTTCCCCTGAAGCT
TCATCTTTCACTACCTCCTCATCTTCTACTGGCGATCCTCCCTTGGTGCC
TGTGGCTACGCACACGCCTCCTCTGCTAGTGGGGGAGGCCGCGCCGCCGC
CTCAGCAGCAGCAGCAACCGCAAGGGGTGGAGAAGGAGAAGGGTAATGTG
GTGGAGCATAAGCATCAAAAGCAGCAAAAGGATGACTCTGGGAGAAGAGA
AAGTGGCCCATCTGCTGCTGCTGCTCCTGCTGCTCCTGCTGCTGCTCCTG
CTGCTGCTCCTGCTCATACACTTGCTCCTTTATCCGGCCCTCCACCGAGC
TGGAGCGCAATTGTAGGGAAGAAGGGCGAGGAAGAGGATACGGGGTAGAT
GCACACGAACACAGGCGGAGAGACGGAGACGAAGACGATGGCCTCAACGA
GCAGCAGCACGACTGGCATTAGGCCCCGTGCCACGAGCAGGCCTGGTAGC
AGTAGTAGCAGCACAATGAGCAGTTCTAGCAATGTCAGGAAGCCCACACC
TGAAAAAGTTGGCCGCAAGTTCATTTTAGCATACTATCCCGTCATGTCCA
AAAGTGCGGAGGAGCTCATCAAGTTCTACAAGGAGGATTCCTCCTTCTCT
CATACTAACATAGCGGAAGTCACCGAGGGCCAAGACAACAAACCCGCCTA
CGGCCTCGACCAAATCCGGGCCCGCATCGATGCTCTGGATCTGGGCGGGG
CCGTCGTAGACATTACGAGTGTGGACGTGCAGTCCTCAAAAGACGGCGCT
GTCCTCATCCTCGTCCAAGGCGTCATGACCCGGCGTGGTGGCAAGCCGCC
TCGTGCTTTCGTGCAAACCTTCTTCCTGGCCCAGCAGGAGAACAACGAGA
CGCATTACTATCTGCTCAACGACGTGTTCCGTACGTTGGAAGAGCCGCCT
GTGACCACGCGCTCTCCTACTCCTACCCCACCAGCAGCCATCTCCTTATC
ATCCTCTATTGTCAAAACGGCCGCTGGGGCCGCGTCTGTTTCCCTGTCCC
CCAAATGTGAAACGGTGGCGGTCGTTCAAGAGGAAGGAGACAAAGAAAGG
AAGGAGGGGGGGCAGGATATGGGAGCGGAAGGAGAAGAGCAACAGTTGCA
GGAGCAGCAGCAACAGCAAACATTGCAGAGAAAGATTGAGGAAGGGGAAG
GAGCATTGGCGATGAACGGCATAAGGGAGGAAGCTCAAGGGAAGAAGAAG
GATAAGAAGAAGAAGGCTGTGGAGGAGAGAGGCCTTTCCCCTGAAGCTTC
ATCTTTCACTACCTCCTCATCTTCTACTGGCGATCCTCCCTTGGTGCCTG
TGGCTACGCACACGCCTCCTCTGCTAGTGGGGGAGGCCGCGCCGCCGCCT
CAGCAGCAGCAGCAACCGCAAGGGGTGGAGAAGGAGAAGGGTAATGTGGT
GGAGCATAAGCATCAAAAGCAGCAAAAGGATGACTCTGGGAGAAGAGAAA
GTGGCCCATCTGCTGCTGCTGCTCCTGCTGCTCCTGCTGCTGCTCCTGCT
GCTGCTCCTGCTCATACACTTGCTCCTTTATCCGGCCCTCCACCGAGCTG
GAGCGCAATTGTAGGGAAGAAGGGCGAGGAAGAGGATACGGGGTAGATGC
ACACGAACACAGGCGGAGAGACGGAGACGAAGACGATGGCCTCAACGAGC
AGCAGCACGACTGGCATTAGGCCCCGTGCCACGAGCAGGCCTGGTAGCAG
TAGTAGCAGCACAATGAGCAGTTCTAGCAATGTCAGGAAGCCCACACCTG
AAAAAGTTGGCCGCAAGTTCATTTTAGCATACTATCCCGTCATGTCCAAA
AGTGCGGAGGAGCTCATCAAGTTCTACAAGGAGGATTCCTCCTTCTCTCA
TACTAACATAGCGGAAGTCACCGAGGGCCAAGACAACAAACCCGCCTACG
GCCTCGACCAAATCCGGGCCCGCATCGATGCTCTGGATCTGGGCGGGGCC
GTCGTAGACATTACGAGTGTGGACGTGCAGTCCTCAAAAGACGGCGCTGT
CCTCATCCTCGTCCAAGGCGTCATGACCCGGCGTGGTGGCAAGCCGCCTC
GTGCTTTCGTGCAAACCTTCTTCCTGGCCCAGCAGGAGAACAACGAGACG
CATTACTATCTGCTCAACGACGTGTTCCGTACGTTGGAAGAGCCGCCTGT
GACCACGCGCTCTCCTACTCCTACCCCACCAGCAGCCATCTCCTTATCAT
CCTCTATTGTCAAAACGGCCGCTGGGGCCGCGTCTGTTTCCCTGTCCCCC
AAATGTGAAACGGTGGCGGTCGTTCAAGAGGAAGGAGACAAAGAAAGGAA
GGAGGGGGGGCAGGATATGGGAGCGGAAGGAGAAGAGCAACAGTTGCAGG
AGCAGCAGCAACAGCAAACATTGCAGAGAAAGATTGAGGAAGGGGAAGGA
GCATTGGCGATGAACGGCATAAGGGAGGAAGCTCAAGGGAAGAAGAAGGA
TAAGAAGAAGAAGGCTGTGGAGGAGAGAGGCCTTTCCCCTGAAGCTTCAT
CTTTCACTACCTCCTCATCTTCTACTGGCGATCCTCCCTTGGTGCCTGTG
GCTACGCACACGCCTCCTCTGCTAGTGGGGGAGGCCGCGCCGCCGCCTCA
GCAGCAGCAGCAACCGCAAGGGGTGGAGAAGGAGAAGGGTAATGTGGTGG
AGCATAAGCATCAAAAGCAGCAAAAGGATGACTCTGGGAGAAGAGAAAGT
GGCCCATCTGCTGCTGCTGCTCCTGCTGCTCCTGCTGCTGCTCCTGCTGC
TGCTCCTGCTCATACACTTGCTCCTTTATCCGGCCCTCCACCGAGCTGGA
GCGCAATTGTAGGGAAGAAGGGCGAGGAAGAGGATACGGGGTAGATGCAC
ACGAACACAGGCGGAGAGACGGAGACGAAGACGATGGCCTCAACGAGCAG
CAGCACGACTGGCATTAGGCCCCGTGCCACGAGCAGGCCTGGTAGCAGTA
GTAGCAGCACAATGAGCAGTTCTAGCAATGTCAGGAAGCCCACACCTGAA
AAAGTTGGCCGCAAGTTCATTTTAGCATACTATCCCGTCATGTCCAAAAG
TGCGGAGGAGCTCATCAAGTTCTACAAGGAGGATTCCTCCTTCTCTCATA
CTAACATAGCGGAAGTCACCGAGGGCCAAGACAACAAACCCGCCTACGGC
CTCGACCAAATCCGGGCCCGCATCGATGCTCTGGATCTGGGCGGGGCCGT
CGTAGACATTACGAGTGTGGACGTGCAGTCCTCAAAAGACGGCGCTGTCC
TCATCCTCGTCCAAGGCGTCATGACCCGGCGTGGTGGCAAGCCGCCTCGT
GCTTTCGTGCAAACCTTCTTCCTGGCCCAGCAGGAGAACAACGAGACGCA
TTACTATCTGCTCAACGACGTGTTCCGTACGTTGGAAGAGCCGCCTGTGA
CCACGCGCTCTCCTACTCCTACCCCACCAGCAGCCATCTCCTTATCATCC
TCTATTGTCAAAACGGCCGCTGGGGCCGCGTCTGTTTCCCTGTCCCCCAA
ATGTGAAACGGTGGCGGTCGTTCAAGAGGAAGGAGACAAAGAAAGGAAGG
AGGGGGGGCAGGATATGGGAGCGGAAGGAGAAGAGCAACAGTTGCAGGAG
CAGCAGCAACAGCAAACATTGCAGAGAAAGATTGAGGAAGGGGAAGGAGC
ATTGGCGATGAACGGCATAAGGGAGGAAGCTCAAGGGAAGAAGAAGGATA
AGAAGAAGAAGGCTGTGGAGGAGAGAGGCCTTTCCCCTGAAGCTTCATCT
TTCACTACCTCCTCATCTTCTACTGGCGATCCTCCCTTGGTGCCTGTGGC
TACGCACACGCCTCCTCTGCTAGTGGGGGAGGCCGCGCCGCCGCCTCAGC
AGCAGCAGCAACCGCAAGGGGTGGAGAAGGAGAAGGGTAATGTGGTGGAG
CATAAGCATCAAAAGCAGCAAAAGGATGACTCTGGGAGAAGAGAAAGTGG
CCCATCTGCTGCTGCTGCTCCTGCTGCTCCTGCTGCTGCTCCTGCTGCTG
CTCCTGCTCATACACTTGCTCCTTTATCCGGCCCTCCACCGAGCTGGAGC
GCAATTGTAGGGAAGAAGGGCGAGGAAGAGGATACGGGGTAG

Synonyms

Publications