jgi.p|Nanoce1779_2|591032, mRNA_4994 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591032
Unique NamemRNA_4994
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1738
Alignment locationscaffold_12:200761..202498 -

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Properties
Property NameValue
TranscriptId591118
TrackFilteredModels2
ProteinId591032
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:200761..202498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591032gene_4994Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591032mRNA_4994-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4994CDS_4994Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4994 ID=mRNA_4994|Name=jgi.p|Nanoce1779_2|591032|organism=Nannochloropsis oceanica|type=mRNA|length=1738bp
ACAGACCTACAGGTCCCGCCTTTTCCCTTGCCCCTTCCGTGCCGGCCATC
GTCTTCGTCCCCGTCCGCATTCTTCGGGATGGTGCGGGTCATGCCGTTTA
AGGCCTATCGGCCACCCGCCCCCCTCGCCAGCACCATCGCCGCCCCTCCC
TACGACGTTATCAATTCCGATGAAGCTCGCAAGCTAGCTGATGGAAAGGA
AAGCAGCTTTCTACGGGTAAACAAGCCTGAGATCGACTTGCCCGCCAGCC
TCTCTCCTTATGACCTGCGGGTGTACGAACGCGGAGCGAAAAATCTGCAA
GAATTCATATCCCGAGGATGGTTGAAGAAAGATGATAGCCCTTCCTATTA
TATTTATGCGCAGCGGATGGGCGACCACCTCCAGCATGGGATATGCGGCG
CTTGCTCTGTGGAAGAGTACGCAACAGGGGTGATAAAACGCCACGAAAAA
ACACAAGTGAAGAAGGAGAACGACCGAACCCGATTGACCTACACCCAAAA
TGCCAATGTAGGCCCTGTGTTTATCATGTACAAGCCTCATGAGGGGCTGG
ACTCGCTGGTGACCTCCGTGACCAGCTCGAGGCCGCCCGAGACGTCTTTT
GTAGCGGGGGATGACGGGATTGAGCATTTGGTCTGGCCAATAAGCGATGA
GCCGACCGTGAGTGCCATCAGGCGTGCGTTTGAGAGTATCCGGTATACGT
ACATTGCAGACGGACATCATCGTTCTGCCAGTGCATTTAGGGTGGGGGAG
ATGAAGATCAAAGAGGCGATTGCGGCGGGGCAGAATGTGACGGGGAACGA
GTCGTTCTGCTTCTTTTTAGCGGTGTTGTTCCCGGCGGATCAGTTGAAAA
TATTCGAGTATAATCGGGTGGTGAAAGATCTGAATGGTTGGACAGAGGAG
GAATTCATTGGAAGGGTCAGCGAGCATTTTGAGGTACGCAAGCTGAGTGC
TGCTGCCGCTGCCAATGCTGCTGCAGGAAAAGTGGAAAGGGAGAAGAGTC
ATTCACCAGCAGCCAAAGGGGAGGTGGGTATGTGCCTGCGAGGGACGTGG
TATAGGCTTAAGGTGCGCGAGATGTCAGTACCGAAAAAGGATCCGGTAAA
CTCCCTGGATGTGCAGCTGCTATATAACCATGTATTGGCCTCTGTGTTGG
GGATTGGGGACCCTCGGGAGGATGAGAGGATGAAGTACGTGGGGGGGACG
AGAGGAACGGAGGAGCTGGAGAGGTTGGTGGAGGGAGAGAGGGCATGGGG
GGTCGTGGCGTTTGCCATGTTCCCGGTGGCAGTGGAGGAGGTGATGGATA
TTGCGGATGCGGAGGCATTGATGCCTCCGAAGGCGACTTGGTTTGAGCCG
AAGCTACGGTCGGGCCTGATTGTCAGGCTGTATGATGACTCGTGAGGGGC
GAAGGGATGAGAAGGAGGAAGGGGTGAAGGATGGTAACTGTTTTTTATCA
TAGTGACACTACCTCTGGGGTTTTGGAGGGTGAGGAAGTAGAGGGTGAGA
TGGATCAAGCCGGGAGAAAGTCCGAAGTTCTAAAAAGAGGATGAGATATG
AGATGTGAGATGACATGCGCATGATCTAGGCGTACGCTTGAGACACTTGC
GCGCAACAATTTGGGCACCGGAGAGTGGTAACAAAGCAATTAAATAAGAA
AACCATATGGTGAAAAATCAAATTCACCCTTCACGAAATGAAAAAGCCGT
TTTTAAGTATGGAGAAACGCATTTTTCCTTCCTTCAGC
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protein sequence of jgi.p|Nanoce1779_2|591032

>mRNA_4994-protein ID=mRNA_4994-protein|Name=jgi.p|Nanoce1779_2|591032|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MVRVMPFKAYRPPAPLASTIAAPPYDVINSDEARKLADGKESSFLRVNKP
EIDLPASLSPYDLRVYERGAKNLQEFISRGWLKKDDSPSYYIYAQRMGDH
LQHGICGACSVEEYATGVIKRHEKTQVKKENDRTRLTYTQNANVGPVFIM
YKPHEGLDSLVTSVTSSRPPETSFVAGDDGIEHLVWPISDEPTVSAIRRA
FESIRYTYIADGHHRSASAFRVGEMKIKEAIAAGQNVTGNESFCFFLAVL
FPADQLKIFEYNRVVKDLNGWTEEEFIGRVSEHFEVRKLSAAAAANAAAG
KVEREKSHSPAAKGEVGMCLRGTWYRLKVREMSVPKKDPVNSLDVQLLYN
HVLASVLGIGDPREDERMKYVGGTRGTEELERLVEGERAWGVVAFAMFPV
AVEEVMDIADAEALMPPKATWFEPKLRSGLIVRLYDDS*
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mRNA from alignment at scaffold_12:200761..202498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4994 ID=mRNA_4994|Name=jgi.p|Nanoce1779_2|591032|organism=Nannochloropsis oceanica|type=mRNA|length=1738bp|location=Sequence derived from alignment at scaffold_12:200761..202498- (Nannochloropsis oceanica)
ACAGACCTACAGGTCCCGCCTTTTCCCTTGCCCCTTCCGTGCCGGCCATC
GTCTTCGTCCCCGTCCGCATTCTTCGGGATGGTGCGGGTCATGCCGTTTA
AGGCCTATCGGCCACCCGCCCCCCTCGCCAGCACCATCGCCGCCCCTCCC
TACGACGTTATCAATTCCGATGAAGCTCGCAAGCTAGCTGATGGAAAGGA
AAGCAGCTTTCTACGGGTAAACAAGCCTGAGATCGACTTGCCCGCCAGCC
TCTCTCCTTATGACCTGCGGGTGTACGAACGCGGAGCGAAAAATCTGCAA
GAATTCATATCCCGAGGATGGTTGAAGAAAGATGATAGCCCTTCCTATTA
TATTTATGCGCAGCGGATGGGCGACCACCTCCAGCATGGGATATGCGGCG
CTTGCTCTGTGGAAGAGTACGCAACAGGGGTGATAAAACGCCACGAAAAA
ACACAAGTGAAGAAGGAGAACGACCGAACCCGATTGACCTACACCCAAAA
TGCCAATGTAGGCCCTGTGTTTATCATGTACAAGCCTCATGAGGGGCTGG
ACTCGCTGGTGACCTCCGTGACCAGCTCGAGGCCGCCCGAGACGTCTTTT
GTAGCGGGGGATGACGGGATTGAGCATTTGGTCTGGCCAATAAGCGATGA
GCCGACCGTGAGTGCCATCAGGCGTGCGTTTGAGAGTATCCGGTATACGT
ACATTGCAGACGGACATCATCGTTCTGCCAGTGCATTTAGGGTGGGGGAG
ATGAAGATCAAAGAGGCGATTGCGGCGGGGCAGAATGTGACGGGGAACGA
GTCGTTCTGCTTCTTTTTAGCGGTGTTGTTCCCGGCGGATCAGTTGAAAA
TATTCGAGTATAATCGGGTGGTGAAAGATCTGAATGGTTGGACAGAGGAG
GAATTCATTGGAAGGGTCAGCGAGCATTTTGAGGTACGCAAGCTGAGTGC
TGCTGCCGCTGCCAATGCTGCTGCAGGAAAAGTGGAAAGGGAGAAGAGTC
ATTCACCAGCAGCCAAAGGGGAGGTGGGTATGTGCCTGCGAGGGACGTGG
TATAGGCTTAAGGTGCGCGAGATGTCAGTACCGAAAAAGGATCCGGTAAA
CTCCCTGGATGTGCAGCTGCTATATAACCATGTATTGGCCTCTGTGTTGG
GGATTGGGGACCCTCGGGAGGATGAGAGGATGAAGTACGTGGGGGGGACG
AGAGGAACGGAGGAGCTGGAGAGGTTGGTGGAGGGAGAGAGGGCATGGGG
GGTCGTGGCGTTTGCCATGTTCCCGGTGGCAGTGGAGGAGGTGATGGATA
TTGCGGATGCGGAGGCATTGATGCCTCCGAAGGCGACTTGGTTTGAGCCG
AAGCTACGGTCGGGCCTGATTGTCAGGCTGTATGATGACTCGTGAGGGGC
GAAGGGATGAGAAGGAGGAAGGGGTGAAGGATGGTAACTGTTTTTTATCA
TAGTGACACTACCTCTGGGGTTTTGGAGGGTGAGGAAGTAGAGGGTGAGA
TGGATCAAGCCGGGAGAAAGTCCGAAGTTCTAAAAAGAGGATGAGATATG
AGATGTGAGATGACATGCGCATGATCTAGGCGTACGCTTGAGACACTTGC
GCGCAACAATTTGGGCACCGGAGAGTGGTAACAAAGCAATTAAATAAGAA
AACCATATGGTGAAAAATCAAATTCACCCTTCACGAAATGAAAAAGCCGT
TTTTAAGTATGGAGAAACGCATTTTTCCTTCCTTCAGC
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Coding sequence (CDS) from alignment at scaffold_12:200761..202498-

>mRNA_4994 ID=mRNA_4994|Name=jgi.p|Nanoce1779_2|591032|organism=Nannochloropsis oceanica|type=CDS|length=1317bp|location=Sequence derived from alignment at scaffold_12:200761..202498- (Nannochloropsis oceanica)
ATGGTGCGGGTCATGCCGTTTAAGGCCTATCGGCCACCCGCCCCCCTCGC
CAGCACCATCGCCGCCCCTCCCTACGACGTTATCAATTCCGATGAAGCTC
GCAAGCTAGCTGATGGAAAGGAAAGCAGCTTTCTACGGGTAAACAAGCCT
GAGATCGACTTGCCCGCCAGCCTCTCTCCTTATGACCTGCGGGTGTACGA
ACGCGGAGCGAAAAATCTGCAAGAATTCATATCCCGAGGATGGTTGAAGA
AAGATGATAGCCCTTCCTATTATATTTATGCGCAGCGGATGGGCGACCAC
CTCCAGCATGGGATATGCGGCGCTTGCTCTGTGGAAGAGTACGCAACAGG
GGTGATAAAACGCCACGAAAAAACACAAGTGAAGAAGGAGAACGACCGAA
CCCGATTGACCTACACCCAAAATGCCAATGTAGGCCCTGTGTTTATCATG
TACAAGCCTCATGAGGGGCTGGACTCGCTGGTGACCTCCGTGACCAGCTC
GAGGCCGCCCGAGACGTCTTTTGTAGCGGGGGATGACGGGATTGAGCATT
TGGTCTGGCCAATAAGCGATGAGCCGACCGTGAGTGCCATCAGGCGTGCG
TTTGAGAGTATCCGGTATACGTACATTGCAGACGGACATCATCGTTCTGC
CAGTGCATTTAGGGTGGGGGAGATGAAGATCAAAGAGGCGATTGCGGCGG
GGCAGAATGTGACGGGGAACGAGTCGTTCTGCTTCTTTTTAGCGGTGTTG
TTCCCGGCGGATCAGTTGAAAATATTCGAGTATAATCGGGTGGTGAAAGA
TCTGAATGGTTGGACAGAGGAGGAATTCATTGGAAGGGTCAGCGAGCATT
TTGAGGTACGCAAGCTGAGTGCTGCTGCCGCTGCCAATGCTGCTGCAGGA
AAAGTGGAAAGGGAGAAGAGTCATTCACCAGCAGCCAAAGGGGAGGTGGG
TATGTGCCTGCGAGGGACGTGGTATAGGCTTAAGGTGCGCGAGATGTCAG
TACCGAAAAAGGATCCGGTAAACTCCCTGGATGTGCAGCTGCTATATAAC
CATGTATTGGCCTCTGTGTTGGGGATTGGGGACCCTCGGGAGGATGAGAG
GATGAAGTACGTGGGGGGGACGAGAGGAACGGAGGAGCTGGAGAGGTTGG
TGGAGGGAGAGAGGGCATGGGGGGTCGTGGCGTTTGCCATGTTCCCGGTG
GCAGTGGAGGAGGTGATGGATATTGCGGATGCGGAGGCATTGATGCCTCC
GAAGGCGACTTGGTTTGAGCCGAAGCTACGGTCGGGCCTGATTGTCAGGC
TGTATGATGACTCGTGA
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Synonyms
Publications