jgi.p|Nanoce1779_2|591027, mRNA_4992 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591027
Unique Name	mRNA_4992
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1470
Alignment location	scaffold_12:194903..197053 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591113
Track	FilteredModels2
ProteinId	591027

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:194903..197053 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591027	gene_4992	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591027	mRNA_4992-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4992	CDS_4992	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:194903..197053+
coding sequence from alignment at scaffold_12:194903..197053+

mRNA sequence

>mRNA_4992 ID=mRNA_4992|Name=jgi.p|Nanoce1779_2|591027|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp
CAACAGGATCGAAGAGCGCCCTGATCTCGCCTTTCCCCCGACATGTCGGG
TGATGCCGACGCTTATACATTGCCTCGACCTCGCCTTCTGTATGGCAAGG
ATTTCGCAGGGAAGGAGATTTTGGTCATGGTGACTCCAGAGAAGGATGAG
GAGGGGGAAGAGGAAGAGGAGGAAGAGGCCGCGGTACAAAACCAACAAGG
GGCCAGAGAGCCTCTCGTTAGCACCAGCACCAGCAGCGATGCTGCCTGCC
TTTTTTCTACAGAAGTGGCAGCAGCAACAACAACAGTAGAAGCGGCAGCA
GCCAGGCCATACCAGGGCACCAATACTATTGTCATGATGGAGTGGGAAAA
GGAGTACATGGAAACGTTGGTCGAGGCCTTAGCCATCAATGAGGACGATG
AGGTGCTTGAAATTGGGTGGGGACTGGGCTACAGTGCTACGGCCATCCAA
AAGCGTCGACCTAGACGACACGTGATTGTGGAGTGTGACTCCGGGGTGAT
GACACGGGCTGAGGCATGGAAACAAGCACTTTTGAAAGAAGAGGGGGGTG
GGGAGGAGGCTCCTGGCAGCAGCCACAACAACAAGAGCAGTAATAGCAGC
AATAACAATGACAGCAACGAGAGCAGCAGTCGTAATGGAAGAATGAGTAT
TGTCCTTGTGCAAGGTTATTGGCAACAGGTTTTAGCGAGCCTGGGCCAGT
TTACAGCTGTACTGATGGACGACTTCCCCTTACCGTTGGAGGGGCTTGGG
GAAGAGGATGAAGCGCGGGTGTTGGCCTCGACGGGCGGTTCAAGGTGGCA
TCATTTTCTGGATTTGATTGTTAGTTTCCATCTCCACCCTGGCGGGCGTG
TCACGGGCTACTTGAGCCGGGACCTCGAACTCGGTCGTTGGGATTGTTCC
TACACCCGACGGCCTACGCAAGTGCTGGTGCCATCCAACTGTACATATGC
CACCCCCGGACTGCAAACATACTTTGTGCCGCTCGTGAAGTGGAAGGGGG
TGGGAGGGGGTAAGGGAGAAGGAAAAGGAGGTAGAGGAGGAGTAGGAGCG
GTGGGCTGCACACATTTTATCACTGGTCGGGGTAGGGGTGATTCGGATAT
AACTACGCAAGACAAACAAGATGGACAGGAAGGGATGGTGGCATTTGACG
ACGGTACAATGGCCCGGAAAAGGCAGCGTATGTTGAATTATGTATTGGAG
GCGCAAGGTCGAGAGCGGAAATCATATTAGGCATTCCCTTCGGGTCGGGG
AAAGGAGGATGTGACGGCTAAATGATAGGACTCACGGAAGGCGGAGTAAG
GCCAGCCAGCCGACGGAAGAGAAATGAAATGATGTACAGCGCTGCGAATT
ACCAAGGTCATGTAAAGAAGGAAAGGAAGAAGAAAAGAAAGTAAAAACCG
CATGAGGTACAAGCATGGAACCATGTCACACAACGTCGCAGCCTGCTCTG
CTCCTTTTGCGTCATTATCT

protein sequence of jgi.p|Nanoce1779_2|591027

>mRNA_4992-protein ID=mRNA_4992-protein|Name=jgi.p|Nanoce1779_2|591027|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MSGDADAYTLPRPRLLYGKDFAGKEILVMVTPEKDEEGEEEEEEEAAVQN
QQGAREPLVSTSTSSDAACLFSTEVAAATTTVEAAAARPYQGTNTIVMME
WEKEYMETLVEALAINEDDEVLEIGWGLGYSATAIQKRRPRRHVIVECDS
GVMTRAEAWKQALLKEEGGGEEAPGSSHNNKSSNSSNNNDSNESSSRNGR
MSIVLVQGYWQQVLASLGQFTAVLMDDFPLPLEGLGEEDEARVLASTGGS
RWHHFLDLIVSFHLHPGGRVTGYLSRDLELGRWDCSYTRRPTQVLVPSNC
TYATPGLQTYFVPLVKWKGVGGGKGEGKGGRGGVGAVGCTHFITGRGRGD
SDITTQDKQDGQEGMVAFDDGTMARKRQRMLNYVLEAQGRERKSY*

mRNA from alignment at scaffold_12:194903..197053+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4992 ID=mRNA_4992|Name=jgi.p|Nanoce1779_2|591027|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp|location=Sequence derived from alignment at scaffold_12:194903..197053+ (Nannochloropsis oceanica)
CAACAGGATCGAAGAGCGCCCTGATCTCGCCTTTCCCCCGACATGTCGGG
TGATGCCGACGCTTATACATTGCCTCGACCTCGCCTTCTGTATGGCAAGG
ATTTCGCAGGGAAGGAGATTTTGGTCATGGTGACTCCAGAGAAGGATGAG
GAGGGGGAAGAGGAAGAGGAGGAAGAGGCCGCGGTACAAAACCAACAAGG
GGCCAGAGAGCCTCTCGTTAGCACCAGCACCAGCAGCGATGCTGCCTGCC
TTTTTTCTACAGAAGTGGCAGCAGCAACAACAACAGTAGAAGCGGCAGCA
GCCAGGCCATACCAGGGCACCAATACTATTGTCATGATGGAGTGGGAAAA
GGAGTACATGGAAACGTTGGTCGAGGCCTTAGCCATCAATGAGGACGATG
AGGTATGTCTTGGGAGAGAAGAGAGGGAGAGAGCAGGGAAGCGATTGGAT
TCTTTTCTTTAGTACTGTTTATGCATTATTCTGAGCGAAACAATATATTC
TGACACTTCCTTCAGCTTCTTTGATTTCTCACTCCTCCCCGGATGCTTAC
AATTGGTTAGGGCGTGTATCTGTGGTCTTTCAAAAAAAGACTTTCGTCGA
GTACATCGTCTCAGGCACGGAATGTGGTCTTTACACTCAAAGTCTCACTG
CTTGTGAGTCATGAATACTGATTTGATTTTAAACGTCTGGTTGATTTTGA
TACAAAGTCCCTCTCTTTTCCCTCTCCCTCCCAGGTGCTTGAAATTGGGT
GGGGACTGGGCTACAGTGCTACGGCCATCCAAAAGCGTCGACCTAGACGA
CACGTGATTGTGGAGTGTGACTCCGGGGTGATGACACGGGCTGAGGCATG
GAAACAAGCACTTTTGAAAGAAGAGGGGGGTGGGGAGGAGGCTCCTGGCA
GCAGCCACAACAACAAGAGCAGTAATAGCAGCAATAACAATGACAGCAAC
GAGAGCAGCAGTCGTAATGGAAGAATGAGTATTGTCCTTGTGCAAGGTTA
TTGGCAACAGGTTTTAGCGAGCCTGGGCCAGTTTACAGCTGTACTGATGG
ACGACTTCCCCTTACCGTTGGAGGGGCTTGGGGAAGAGGATGAAGCGCGG
GTGTTGGCCTCGACGGGCGGTTCAAGGTGGCATCATTTTCTGGATTTGAT
TGTTAGGTGAGATCAAAAAGAGGGAAGGACTGAAGGAGGGAGTAAGGGCT
GTGCTTACACAGTCATATAAATTTGTTTGATTTCTTTCTCAATTGAGTTC
TCAAACCCATCTATGATCTATTTTTGACCTTTCCCCTGAATTTGCGTGTG
CATGTGATTATTTTTATAGTTTTAGAGGCAAGATATTCATAAATTCGGAT
CGCCTGTATGGTGCTTGAGAAGGGGACCGAGGAGAAAGCTGGTGCGATGA
AATTTCTCACACTTGCATTTATACTCTTCAGTAAGCTTTTATTTGTCCAT
GGCTCACTCTTCTCGTCCTCATTCACCCCCTGCCTTGTCCCCTAACAACA
CGCAGTTTCCATCTCCACCCTGGCGGGCGTGTCACGGGCTACTTGAGCCG
GGACCTCGAACTCGGTCGTTGGGATTGTTCCTACACCCGACGGCCTACGC
AAGTGCTGGTGCCATCCAACTGTACATATGCCACCCCCGGACTGCAAACA
TACTTTGTGCCGCTCGTGAAGTGGAAGGGGGTGGGAGGGGGTAAGGGAGA
AGGAAAAGGAGGTAGAGGAGGAGTAGGAGCGGTGGGCTGCACACATTTTA
TCACTGGTCGGGGTAGGGGTGATTCGGATATAACTACGCAAGACAAACAA
GATGGACAGGAAGGGATGGTGGCATTTGACGACGGTACAATGGCCCGGAA
AAGGCAGCGTATGTTGAATTATGTATTGGAGGCGCAAGGTCGAGAGCGGA
AATCATATTAGGCATTCCCTTCGGGTCGGGGAAAGGAGGATGTGACGGCT
AAATGATAGGACTCACGGAAGGCGGAGTAAGGCCAGCCAGCCGACGGAAG
AGAAATGAAATGATGTACAGCGCTGCGAATTACCAAGGTCATGTAAAGAA
GGAAAGGAAGAAGAAAAGAAAGTAAAAACCGCATGAGGTACAAGCATGGA
ACCATGTCACACAACGTCGCAGCCTGCTCTGCTCCTTTTGCGTCATTATC
T

Coding sequence (CDS) from alignment at scaffold_12:194903..197053+

>mRNA_4992 ID=mRNA_4992|Name=jgi.p|Nanoce1779_2|591027|organism=Nannochloropsis oceanica|type=CDS|length=3564bp|location=Sequence derived from alignment at scaffold_12:194903..197053+ (Nannochloropsis oceanica)
ATGTCGGGTGATGCCGACGCTTATACATTGCCTCGACCTCGCCTTCTGTA
TGGCAAGGATTTCGCAGGGAAGGAGATTTTGGTCATGGTGACTCCAGAGA
AGGATGAGGAGGGGGAAGAGGAAGAGGAGGAAGAGGCCGCGGTACAAAAC
CAACAAGGGGCCAGAGAGCCTCTCGTTAGCACCAGCACCAGCAGCGATGC
TGCCTGCCTTTTTTCTACAGAAGTGGCAGCAGCAACAACAACAGTAGAAG
CGGCAGCAGCCAGGCCATACCAGGGCACCAATACTATTGTCATGATGGAG
TGGGAAAAGGAGTACATGGAAACGTTGGTCGAGGCCTTAGCCATCAATGA
GGACGATGAGGTGCTTGAAATTGGGTGGGGACTGGGCTACAGTGCTACGG
CCATCCAAAAGCGTCGACCTAGACGACACGTGATTGTGGAGTGTGACTCC
GGGGTGATGACACGGGCTGAGGCATGGAAACAAGCACTTTTGAAAGAAGA
GGGGGGTGGGGAGGAGGCTCCTGGCAGCAGCCACAACAACAAGAGCAGTA
ATAGCAGCAATAACAATGACAGCAACGAGAGCAGCAGTCGTAATGGAAGA
ATGAGTATTGTCCTTGTGCAAGGTTATTGGCAACAGGTTTTAGCGAGCCT
GGGCCAGTTTACAGCTGTACTGATGGACGACTTCCCCTTACCGTTGGAGG
GGCTTGGGGAAGAGGATGAAGCGCGGGTGTTGGCCTCGACGGGCGGTTCA
AGGTGGCATCATTTTCTGGATTTGATTGTTAGTTTCCATCTCCACCCTGG
CGGGCGTGTCACGGGCTACTTGAGCCGGGACCTCGAACTCGGTCGTTGGG
ATTGTTCCTACACCCGACGGCCTACGCAAGTGCTGGTGCCATCCAACTGT
ACATATGCCACCCCCGGACTGCAAACATACTTTGTGCCGCTCGTGAAGTG
GAAGGGGGTGGGAGGGGGTAAGGGAGAAGGAAAAGGAGGTAGAGGAGGAG
TAGGAGCGGTGGGCTGCACACATTTTATCACTGGTCGGGGTAGGGGTGAT
TCGGATATAACTACGCAAGACAAACAAGATGGACAGGAAGGGATGGTGGC
ATTTGACGACGGTACAATGGCCCGGAAAAGGCAGCGTATGTTGAATTATG
TATTGGAGGCGCAAGGTCGAGAGCGGAAATCATATTAGATGTCGGGTGAT
GCCGACGCTTATACATTGCCTCGACCTCGCCTTCTGTATGGCAAGGATTT
CGCAGGGAAGGAGATTTTGGTCATGGTGACTCCAGAGAAGGATGAGGAGG
GGGAAGAGGAAGAGGAGGAAGAGGCCGCGGTACAAAACCAACAAGGGGCC
AGAGAGCCTCTCGTTAGCACCAGCACCAGCAGCGATGCTGCCTGCCTTTT
TTCTACAGAAGTGGCAGCAGCAACAACAACAGTAGAAGCGGCAGCAGCCA
GGCCATACCAGGGCACCAATACTATTGTCATGATGGAGTGGGAAAAGGAG
TACATGGAAACGTTGGTCGAGGCCTTAGCCATCAATGAGGACGATGAGGT
GCTTGAAATTGGGTGGGGACTGGGCTACAGTGCTACGGCCATCCAAAAGC
GTCGACCTAGACGACACGTGATTGTGGAGTGTGACTCCGGGGTGATGACA
CGGGCTGAGGCATGGAAACAAGCACTTTTGAAAGAAGAGGGGGGTGGGGA
GGAGGCTCCTGGCAGCAGCCACAACAACAAGAGCAGTAATAGCAGCAATA
ACAATGACAGCAACGAGAGCAGCAGTCGTAATGGAAGAATGAGTATTGTC
CTTGTGCAAGGTTATTGGCAACAGGTTTTAGCGAGCCTGGGCCAGTTTAC
AGCTGTACTGATGGACGACTTCCCCTTACCGTTGGAGGGGCTTGGGGAAG
AGGATGAAGCGCGGGTGTTGGCCTCGACGGGCGGTTCAAGGTGGCATCAT
TTTCTGGATTTGATTGTTAGTTTCCATCTCCACCCTGGCGGGCGTGTCAC
GGGCTACTTGAGCCGGGACCTCGAACTCGGTCGTTGGGATTGTTCCTACA
CCCGACGGCCTACGCAAGTGCTGGTGCCATCCAACTGTACATATGCCACC
CCCGGACTGCAAACATACTTTGTGCCGCTCGTGAAGTGGAAGGGGGTGGG
AGGGGGTAAGGGAGAAGGAAAAGGAGGTAGAGGAGGAGTAGGAGCGGTGG
GCTGCACACATTTTATCACTGGTCGGGGTAGGGGTGATTCGGATATAACT
ACGCAAGACAAACAAGATGGACAGGAAGGGATGGTGGCATTTGACGACGG
TACAATGGCCCGGAAAAGGCAGCGTATGTTGAATTATGTATTGGAGGCGC
AAGGTCGAGAGCGGAAATCATATTAGATGTCGGGTGATGCCGACGCTTAT
ACATTGCCTCGACCTCGCCTTCTGTATGGCAAGGATTTCGCAGGGAAGGA
GATTTTGGTCATGGTGACTCCAGAGAAGGATGAGGAGGGGGAAGAGGAAG
AGGAGGAAGAGGCCGCGGTACAAAACCAACAAGGGGCCAGAGAGCCTCTC
GTTAGCACCAGCACCAGCAGCGATGCTGCCTGCCTTTTTTCTACAGAAGT
GGCAGCAGCAACAACAACAGTAGAAGCGGCAGCAGCCAGGCCATACCAGG
GCACCAATACTATTGTCATGATGGAGTGGGAAAAGGAGTACATGGAAACG
TTGGTCGAGGCCTTAGCCATCAATGAGGACGATGAGGTGCTTGAAATTGG
GTGGGGACTGGGCTACAGTGCTACGGCCATCCAAAAGCGTCGACCTAGAC
GACACGTGATTGTGGAGTGTGACTCCGGGGTGATGACACGGGCTGAGGCA
TGGAAACAAGCACTTTTGAAAGAAGAGGGGGGTGGGGAGGAGGCTCCTGG
CAGCAGCCACAACAACAAGAGCAGTAATAGCAGCAATAACAATGACAGCA
ACGAGAGCAGCAGTCGTAATGGAAGAATGAGTATTGTCCTTGTGCAAGGT
TATTGGCAACAGGTTTTAGCGAGCCTGGGCCAGTTTACAGCTGTACTGAT
GGACGACTTCCCCTTACCGTTGGAGGGGCTTGGGGAAGAGGATGAAGCGC
GGGTGTTGGCCTCGACGGGCGGTTCAAGGTGGCATCATTTTCTGGATTTG
ATTGTTAGTTTCCATCTCCACCCTGGCGGGCGTGTCACGGGCTACTTGAG
CCGGGACCTCGAACTCGGTCGTTGGGATTGTTCCTACACCCGACGGCCTA
CGCAAGTGCTGGTGCCATCCAACTGTACATATGCCACCCCCGGACTGCAA
ACATACTTTGTGCCGCTCGTGAAGTGGAAGGGGGTGGGAGGGGGTAAGGG
AGAAGGAAAAGGAGGTAGAGGAGGAGTAGGAGCGGTGGGCTGCACACATT
TTATCACTGGTCGGGGTAGGGGTGATTCGGATATAACTACGCAAGACAAA
CAAGATGGACAGGAAGGGATGGTGGCATTTGACGACGGTACAATGGCCCG
GAAAAGGCAGCGTATGTTGAATTATGTATTGGAGGCGCAAGGTCGAGAGC
GGAAATCATATTAG

Synonyms

Publications