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Properties
| Property Name | Value |
|---|
| TranscriptId | 671261 |
| Track | FilteredModels2 |
| ProteinId | 671175 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:191539..194509 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4991 ID=mRNA_4991|Name=jgi.p|Nanoce1779_2|671175|organism=Nannochloropsis oceanica|type=mRNA|length=2815bp
GGGGGCCGTCTGTTCAGCATGAGAGAATCAGAAGGATAAAGGAATGTTTG
CGGATGCGCGCTAGTGTTGTTTCTCTTTCTCTATTCCACCACTCTGTCCA
ATCACTGCCCTGGGCGTCCTGAATTGGGTCATGTTTTTTTTCTGCATCAT
GACCGCGCTCGCACATCGACGTGTGGCCTGCATTCAACTGCACTTACAAA
GAGAAGCCAGAACAGTGTTGTTGATGTCAACTGCAGGCCCCAGAAATGCC
CTTGCGCTTTCGGTGGGTCCTTGCGTGCGTCATAGATTGTGCACGTGCTC
TTGGCTATTGAAATGGGGGCCCTAGGTATTTGGGTATGCTTGTGTTCTAG
TCCATGCTCCTTGTGTGCCCTGTGGCACGCACCGCCGGTGGCCTTGGTTG
ACACTTGACACTAAGCATCTGCTTGATCCGCTCCGCTCGTTGATTCCCTT
GACACGCGCCCGGCCTCACCCCACGCTTCCCCCGTCCCTACCACACCACG
GGTCTTCATACATCCTCACCAGCACTCAACAGCATGCATAATACGGTGAC
CCTGGCTCGCGTGTCCCTGCGCGATAATTTGCTTTGTGTCTGCGACATGC
GCGGAGTGATTGTCTTCGCTTCAGACGACCTCCTGTGGGCCTTGGGACTT
CCGGGCCCGACCATTCGGCACATTGGCTCCAGCGTCCTAGACTTGTTGAC
CGACGAGGACAAACTTGAGTACAAGAACGCCATGAGAAGGAAATCGGGCT
CGCTTTTGCGATGCCAGCAGAATGGATGTTTCGTGTGGCTTGACATCCAG
TCAACGGGCCAGACCAGCCGGCTTAAGAGAGCATTGCACCGCGTGGAAAA
TGCACGGGCCACCTGCAGCTCCATTACCCCCCCCGCCAGTCACAGCGAGT
GCAATAACAACCACAACCACCAGGAGCCGTATTCCACCAGCTCCTCTAAT
ACCAGCGGCACCAACAACAATAGTCCTCTCAACTACCAGGTCAAGGCCTT
GGCTACTGCCTCGTATCCGTGTGCCGGCGGCGCGGGGCGCATTGCTGGTT
TGGAGGAGCATGTTATGACCAAGGAACAAACTCTCGACTGGTTCCTCTAC
ACCCGGGAGCAAGGTGAAGGCATGGATGAGCTGGCGGATGACGAGAACGA
TGACGACGGCGACGACACTGCCACGGATGGAAGCGACTCGGATGGGGACG
AGGGAGACGATGTCCGCCTCGCCCGACCAACGCCTACGGCCCCTGGTCAT
ACGATGGAACCCGTAACCATGCCCTCTTTGGGCGGTCTGTTTCTGCATGA
GAGTGGGAGTGAAAGCAACTCGGCCTGTACCACCTCAAATTCGGTCTGCT
CCTCGGAGCAGCTGTCAGGGGCGGGGGCCGCAGGCTGGACGGAGGAAGAG
CAGCAACGCCAGCAGGAAGAGGAGGCAGCTATGGTGCGAGAATACTCTTT
TAGAGAAATTTTTGAGTATTTCAGCGCCGGCGCGAAGGTTATGAGCCAGT
CCACCAGCTTCAGCCGTGGGGGGTCCCGTGTCCCGTCTGTCTTGAACTTC
GGGTCGGCAGCAGCTGCAGTAGCAGCAGCTGCAGTCGCGCCCAGCCCTCC
TGCCGCTGGCTTGGTCCGGCCCATGCTTTCGCAACGAGACTCTCGACCCT
TCAGTGAGCGGGTGGCAGCCAAGTGCCGCGCTGCCCCCGAGGAGAGCTAC
AGCGCCAGCAACTACAGCTTCGCCCCTGTGGTATCCTCTTCTTCCTCCGC
TTCTTCCTCGTCATGGTTATTGCAAAACAAGTACAAGGTCAGTGGGTATG
TGGGCAAGGCAGCTGCGACGCTGGGCCTTGGTACTGTTGTCAGCAGCACG
GTGTCGGCTGCGTGCCCGTCTCTGATGACGGCACCGGCGATGTTGGAGGA
GAGCGGGTGGGATTGGTACGTGGACGTCTAGAGAGAAGGAAAGTGAGAGA
GAGAGAGAGAGTGGGTGTGTGATTGTGTAGATTGGTGTATGTGCGTATGC
GACGTGCCACCCGGCCAGCAGTCGGCGTAAGACCCATCGGGGTAAGTTGC
ATGTCGGACAAAGTGAATAGAGAGATAGAGAGTAAGTGCATCGGGAACAG
TAAAGGGACACAGCAGTATCCAGCTTCATTGAGTAGATATGAATACAAAT
TTACAGTGATCGAGGGAGGAAGGAGAGTCTACACGCTTCGCATTTCTCAA
TGCGGCTTCCGCATGTGTCTTCCTTTCTGCCCTGGGGCTCCCGTCACTGT
GTGATATGTGCATAGGAATCCCATAGACAAAGAAATGAACAAGCGGAAGA
GAGGAGGGCCAGAGAAACGTAACTGGCTGATTGAACAGAGAGACCGATAA
AGGTAGGACAAGCGCTGCAGTGGCAGGCCCAAGTTCCAATGCCTTGGCAC
GCGGATTTTGTGGTCGCCCGCAGCCTGCGGTCGGCTTTCTGTGTCACGAT
TTCCCCCCTGGAAGAGAAGAGAGATTTGACAGACGAAGTCTTAAACCAAC
CACACGTACAATAGAAAAGGGATGACAACAAAAACAGTAACAGTAGCAAC
AAGCTTGTCCCGTGCGCGTCATGGAGCGGCGAAACGGCATGAATTAATGA
GAAACATGGTTCATCCACTCTCACGATTGCCGCGCACACAGTGGAAGCTT
TCTCAGGCGGAACACGGGACAGAGAGAGACCACCCCCTCCATAGAGTTTA
GCAGGACTTGTGGACAAAACGCCCACCATCCAACCAGAGGGTTAAGCCCA
AAACAGCTATCAACGCCAGGAGATAAGTAGGTTTCGAAGTAAACATTAAC
AGCACGATACAAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|671175 >mRNA_4991-protein ID=mRNA_4991-protein|Name=jgi.p|Nanoce1779_2|671175|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MHNTVTLARVSLRDNLLCVCDMRGVIVFASDDLLWALGLPGPTIRHIGSS
VLDLLTDEDKLEYKNAMRRKSGSLLRCQQNGCFVWLDIQSTGQTSRLKRA
LHRVENARATCSSITPPASHSECNNNHNHQEPYSTSSSNTSGTNNNSPLN
YQVKALATASYPCAGGAGRIAGLEEHVMTKEQTLDWFLYTREQGEGMDEL
ADDENDDDGDDTATDGSDSDGDEGDDVRLARPTPTAPGHTMEPVTMPSLG
GLFLHESGSESNSACTTSNSVCSSEQLSGAGAAGWTEEEQQRQQEEEAAM
VREYSFREIFEYFSAGAKVMSQSTSFSRGGSRVPSVLNFGSAAAAVAAAA
VAPSPPAAGLVRPMLSQRDSRPFSERVAAKCRAAPEESYSASNYSFAPVV
SSSSSASSSSWLLQNKYKVSGYVGKAAATLGLGTVVSSTVSAACPSLMTA
PAMLEESGWDWYVDV* back to topmRNA from alignment at scaffold_12:191539..194509- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4991 ID=mRNA_4991|Name=jgi.p|Nanoce1779_2|671175|organism=Nannochloropsis oceanica|type=mRNA|length=2971bp|location=Sequence derived from alignment at scaffold_12:191539..194509- (Nannochloropsis oceanica)
GGGGGCCGTCTGTTCAGCATGAGAGAATCAGAAGGATAAAGGAATGTTTG
CGGATGCGCGCTAGTGTTGTTTCTCTTTCTCTATTCCACCACTCTGTCCA
ATCACTGCCCTGGGCGTCCTGAATTGGGTCATGTTTTTTTTCTGCATCAT
GACCGCGCTCGCACATCGACGTGTGGCCTGCATTCAACTGCACTTACAAA
GAGAAGCCAGAACAGTGTTGTTGATGTCAACTGCAGGCCCCAGAAATGCC
CTTGCGCTTTCGGTGGGTCCTTGCGTGCGTCATAGATTGTGCACGTGCTC
TTGGCTATTGAAATGGGGGCCCTAGGTATTTGGGTATGCTTGTGTTCTAG
TCCATGCTCCTTGTGTGCCCTGTGGCACGCACCGCCGGTGGCCTTGGTTG
ACACTTGACACTAAGCATCTGCTTGATCCGCTCCGCTCGTTGATTCCCTT
GACACGCGCCCGGCCTCACCCCACGCTTCCCCCGTCCCTACCACACCACG
GGTCTTCATACATCCTCACCAGCACTCAACAGCATGCATAATACGGTGAC
CCTGGCTCGCGTGTCCCTGCGCGATAATTTGCTTTGTGTCTGCGACATGC
GCGGAGTGATTGTCTTCGCTTCAGACGACCTCCTGTGGGCCTTGGGACTT
CCGGGCCCGACCATTCGGCACATTGGCTCCAGCGTCCTAGACTTGTTGAC
CGACGAGGACAAACTTGAGTACAAGGTATGTCTGGGTATGAGGGGAAAGT
AGGGGAGTAAGGCGGCGGGGAATTTGCAGTGCGACACATGTATCGACCCG
CTTCTTTTCGACCACTTTGTTCTGGGTCTGGGATCTGCTGCACACATCTC
ATAACTCCCTTCCACTCGTATTCACCCACAGAACGCCATGAGAAGGAAAT
CGGGCTCGCTTTTGCGATGCCAGCAGAATGGATGTTTCGTGTGGCTTGAC
ATCCAGTCAACGGGCCAGACCAGCCGGCTTAAGAGAGCATTGCACCGCGT
GGAAAATGCACGGGCCACCTGCAGCTCCATTACCCCCCCCGCCAGTCACA
GCGAGTGCAATAACAACCACAACCACCAGGAGCCGTATTCCACCAGCTCC
TCTAATACCAGCGGCACCAACAACAATAGTCCTCTCAACTACCAGGTCAA
GGCCTTGGCTACTGCCTCGTATCCGTGTGCCGGCGGCGCGGGGCGCATTG
CTGGTTTGGAGGAGCATGTTATGACCAAGGAACAAACTCTCGACTGGTTC
CTCTACACCCGGGAGCAAGGTGAAGGCATGGATGAGCTGGCGGATGACGA
GAACGATGACGACGGCGACGACACTGCCACGGATGGAAGCGACTCGGATG
GGGACGAGGGAGACGATGTCCGCCTCGCCCGACCAACGCCTACGGCCCCT
GGTCATACGATGGAACCCGTAACCATGCCCTCTTTGGGCGGTCTGTTTCT
GCATGAGAGTGGGAGTGAAAGCAACTCGGCCTGTACCACCTCAAATTCGG
TCTGCTCCTCGGAGCAGCTGTCAGGGGCGGGGGCCGCAGGCTGGACGGAG
GAAGAGCAGCAACGCCAGCAGGAAGAGGAGGCAGCTATGGTGCGAGAATA
CTCTTTTAGAGAAATTTTTGAGTATTTCAGCGCCGGCGCGAAGGTTATGA
GCCAGTCCACCAGCTTCAGCCGTGGGGGGTCCCGTGTCCCGTCTGTCTTG
AACTTCGGGTCGGCAGCAGCTGCAGTAGCAGCAGCTGCAGTCGCGCCCAG
CCCTCCTGCCGCTGGCTTGGTCCGGCCCATGCTTTCGCAACGAGACTCTC
GACCCTTCAGTGAGCGGGTGGCAGCCAAGTGCCGCGCTGCCCCCGAGGAG
AGCTACAGCGCCAGCAACTACAGCTTCGCCCCTGTGGTATCCTCTTCTTC
CTCCGCTTCTTCCTCGTCATGGTTATTGCAAAACAAGTACAAGGTCAGTG
GGTATGTGGGCAAGGCAGCTGCGACGCTGGGCCTTGGTACTGTTGTCAGC
AGCACGGTGTCGGCTGCGTGCCCGTCTCTGATGACGGCACCGGCGATGTT
GGAGGAGAGCGGGTGGGATTGGTACGTGGACGTCTAGAGAGAAGGAAAGT
GAGAGAGAGAGAGAGAGTGGGTGTGTGATTGTGTAGATTGGTGTATGTGC
GTATGCGACGTGCCACCCGGCCAGCAGTCGGCGTAAGACCCATCGGGGTA
AGTTGCATGTCGGACAAAGTGAATAGAGAGATAGAGAGTAAGTGCATCGG
GAACAGTAAAGGGACACAGCAGTATCCAGCTTCATTGAGTAGATATGAAT
ACAAATTTACAGTGATCGAGGGAGGAAGGAGAGTCTACACGCTTCGCATT
TCTCAATGCGGCTTCCGCATGTGTCTTCCTTTCTGCCCTGGGGCTCCCGT
CACTGTGTGATATGTGCATAGGAATCCCATAGACAAAGAAATGAACAAGC
GGAAGAGAGGAGGGCCAGAGAAACGTAACTGGCTGATTGAACAGAGAGAC
CGATAAAGGTAGGACAAGCGCTGCAGTGGCAGGCCCAAGTTCCAATGCCT
TGGCACGCGGATTTTGTGGTCGCCCGCAGCCTGCGGTCGGCTTTCTGTGT
CACGATTTCCCCCCTGGAAGAGAAGAGAGATTTGACAGACGAAGTCTTAA
ACCAACCACACGTACAATAGAAAAGGGATGACAACAAAAACAGTAACAGT
AGCAACAAGCTTGTCCCGTGCGCGTCATGGAGCGGCGAAACGGCATGAAT
TAATGAGAAACATGGTTCATCCACTCTCACGATTGCCGCGCACACAGTGG
AAGCTTTCTCAGGCGGAACACGGGACAGAGAGAGACCACCCCCTCCATAG
AGTTTAGCAGGACTTGTGGACAAAACGCCCACCATCCAACCAGAGGGTTA
AGCCCAAAACAGCTATCAACGCCAGGAGATAAGTAGGTTTCGAAGTAAAC
ATTAACAGCACGATACAAAAA back to topCoding sequence (CDS) from alignment at scaffold_12:191539..194509- >mRNA_4991 ID=mRNA_4991|Name=jgi.p|Nanoce1779_2|671175|organism=Nannochloropsis oceanica|type=CDS|length=2796bp|location=Sequence derived from alignment at scaffold_12:191539..194509- (Nannochloropsis oceanica)
AACGCCATGAGAAGGAAATCGGGCTCGCTTTTGCGATGCCAGCAGAATGG
ATGTTTCGTGTGGCTTGACATCCAGTCAACGGGCCAGACCAGCCGGCTTA
AGAGAGCATTGCACCGCGTGGAAAATGCACGGGCCACCTGCAGCTCCATT
ACCCCCCCCGCCAGTCACAGCGAGTGCAATAACAACCACAACCACCAGGA
GCCGTATTCCACCAGCTCCTCTAATACCAGCGGCACCAACAACAATAGTC
CTCTCAACTACCAGGTCAAGGCCTTGGCTACTGCCTCGTATCCGTGTGCC
GGCGGCGCGGGGCGCATTGCTGGTTTGGAGGAGCATGTTATGACCAAGGA
ACAAACTCTCGACTGGTTCCTCTACACCCGGGAGCAAGGTGAAGGCATGG
ATGAGCTGGCGGATGACGAGAACGATGACGACGGCGACGACACTGCCACG
GATGGAAGCGACTCGGATGGGGACGAGGGAGACGATGTCCGCCTCGCCCG
ACCAACGCCTACGGCCCCTGGTCATACGATGGAACCCGTAACCATGCCCT
CTTTGGGCGGTCTGTTTCTGCATGAGAGTGGGAGTGAAAGCAACTCGGCC
TGTACCACCTCAAATTCGGTCTGCTCCTCGGAGCAGCTGTCAGGGGCGGG
GGCCGCAGGCTGGACGGAGGAAGAGCAGCAACGCCAGCAGGAAGAGGAGG
CAGCTATGGTGCGAGAATACTCTTTTAGAGAAATTTTTGAGTATTTCAGC
GCCGGCGCGAAGGTTATGAGCCAGTCCACCAGCTTCAGCCGTGGGGGGTC
CCGTGTCCCGTCTGTCTTGAACTTCGGGTCGGCAGCAGCTGCAGTAGCAG
CAGCTGCAGTCGCGCCCAGCCCTCCTGCCGCTGGCTTGGTCCGGCCCATG
CTTTCGCAACGAGACTCTCGACCCTTCAGTGAGCGGGTGGCAGCCAAGTG
CCGCGCTGCCCCCGAGGAGAGCTACAGCGCCAGCAACTACAGCTTCGCCC
CTGTGGTATCCTCTTCTTCCTCCGCTTCTTCCTCGTCATGGTTATTGCAA
AACAAGTACAAGGTCAGTGGGTATGTGGGCAAGGCAGCTGCGACGCTGGG
CCTTGGTACTGTTGTCAGCAGCACGGTGTCGGCTGCGTGCCCGTCTCTGA
TGACGGCACCGGCGATGTTGGAGGAGAGCGGGTGGGATTGGTACGTGGAC
GTCTAGATGCATAATACGGTGACCCTGGCTCGCGTGTCCCTGCGCGATAA
TTTGCTTTGTGTCTGCGACATGCGCGGAGTGATTGTCTTCGCTTCAGACG
ACCTCCTGTGGGCCTTGGGACTTCCGGGCCCGACCATTCGGCACATTGGC
TCCAGCGTCCTAGACTTGTTGACCGACGAGGACAAACTTGAGTACAAGAA
CGCCATGAGAAGGAAATCGGGCTCGCTTTTGCGATGCCAGCAGAATGGAT
GTTTCGTGTGGCTTGACATCCAGTCAACGGGCCAGACCAGCCGGCTTAAG
AGAGCATTGCACCGCGTGGAAAATGCACGGGCCACCTGCAGCTCCATTAC
CCCCCCCGCCAGTCACAGCGAGTGCAATAACAACCACAACCACCAGGAGC
CGTATTCCACCAGCTCCTCTAATACCAGCGGCACCAACAACAATAGTCCT
CTCAACTACCAGGTCAAGGCCTTGGCTACTGCCTCGTATCCGTGTGCCGG
CGGCGCGGGGCGCATTGCTGGTTTGGAGGAGCATGTTATGACCAAGGAAC
AAACTCTCGACTGGTTCCTCTACACCCGGGAGCAAGGTGAAGGCATGGAT
GAGCTGGCGGATGACGAGAACGATGACGACGGCGACGACACTGCCACGGA
TGGAAGCGACTCGGATGGGGACGAGGGAGACGATGTCCGCCTCGCCCGAC
CAACGCCTACGGCCCCTGGTCATACGATGGAACCCGTAACCATGCCCTCT
TTGGGCGGTCTGTTTCTGCATGAGAGTGGGAGTGAAAGCAACTCGGCCTG
TACCACCTCAAATTCGGTCTGCTCCTCGGAGCAGCTGTCAGGGGCGGGGG
CCGCAGGCTGGACGGAGGAAGAGCAGCAACGCCAGCAGGAAGAGGAGGCA
GCTATGGTGCGAGAATACTCTTTTAGAGAAATTTTTGAGTATTTCAGCGC
CGGCGCGAAGGTTATGAGCCAGTCCACCAGCTTCAGCCGTGGGGGGTCCC
GTGTCCCGTCTGTCTTGAACTTCGGGTCGGCAGCAGCTGCAGTAGCAGCA
GCTGCAGTCGCGCCCAGCCCTCCTGCCGCTGGCTTGGTCCGGCCCATGCT
TTCGCAACGAGACTCTCGACCCTTCAGTGAGCGGGTGGCAGCCAAGTGCC
GCGCTGCCCCCGAGGAGAGCTACAGCGCCAGCAACTACAGCTTCGCCCCT
GTGGTATCCTCTTCTTCCTCCGCTTCTTCCTCGTCATGGTTATTGCAAAA
CAAGTACAAGGTCAGTGGGTATGTGGGCAAGGCAGCTGCGACGCTGGGCC
TTGGTACTGTTGTCAGCAGCACGGTGTCGGCTGCGTGCCCGTCTCTGATG
ACGGCACCGGCGATGTTGGAGGAGAGCGGGTGGGATTGGTACGTGGACGT
CTAGATGCATAATACGGTGACCCTGGCTCGCGTGTCCCTGCGCGATAATT
TGCTTTGTGTCTGCGACATGCGCGGAGTGATTGTCTTCGCTTCAGACGAC
CTCCTGTGGGCCTTGGGACTTCCGGGCCCGACCATTCGGCACATTGGCTC
CAGCGTCCTAGACTTGTTGACCGACGAGGACAAACTTGAGTACAAG back to top
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