jgi.p|Nanoce1779_2|591022, mRNA_4990 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591022
Unique NamemRNA_4990
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1055
Alignment locationscaffold_12:191539..192593 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591108
TrackFilteredModels2
ProteinId591022
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:191539..192593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591022gene_4990Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591022mRNA_4990-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4990CDS_4990Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4990 ID=mRNA_4990|Name=jgi.p|Nanoce1779_2|591022|organism=Nannochloropsis oceanica|type=mRNA|length=1055bp
TTTTTGTATCGTGCTGTTAATGTTTACTTCGAAACCTACTTATCTCCTGG
CGTTGATAGCTGTTTTGGGCTTAACCCTCTGGTTGGATGGTGGGCGTTTT
GTCCACAAGTCCTGCTAAACTCTATGGAGGGGGTGGTCTCTCTCTGTCCC
GTGTTCCGCCTGAGAAAGCTTCCACTGTGTGCGCGGCAATCGTGAGAGTG
GATGAACCATGTTTCTCATTAATTCATGCCGTTTCGCCGCTCCATGACGC
GCACGGGACAAGCTTGTTGCTACTGTTACTGTTTTTGTTGTCATCCCTTT
TCTATTGTACGTGTGGTTGGTTTAAGACTTCGTCTGTCAAATCTCTCTTC
TCTTCCAGGGGGGAAATCGTGACACAGAAAGCCGACCGCAGGCTGCGGGC
GACCACAAAATCCGCGTGCCAAGGCATTGGAACTTGGGCCTGCCACTGCA
GCGCTTGTCCTACCTTTATCGGTCTCTCTGTTCAATCAGCCAGTTACGTT
TCTCTGGCCCTCCTCTCTTCCGCTTGTTCATTTCTTTGTCTATGGGATTC
CTATGCACATATCACACAGTGACGGGAGCCCCAGGGCAGAAAGGAAGACA
CATGCGGAAGCCGCATTGAGAAATGCGAAGCGTGTAGACTCTCCTTCCTC
CCTCGATCACTGTAAATTTGTATTCATATCTACTCAATGAAGCTGGATAC
TGCTGTGTCCCTTTACTGTTCCCGATGCACTTACTCTCTATCTCTCTATT
CACTTTGTCCGACATGCAACTTACCCCGATGGGTCTTACGCCGACTGCTG
GCCGGGTGGCACGTCGCATACGCACATACACCAATCTACACAATCACACA
CCCACTCTCTCTCTCTCTCTCACTTTCCTTCTCTCTAGACGTCCACGTAC
CAATCCCACCCGCTCTCCTCCAACATCGCCGGTGCCGTCATCAGAGACGG
GCACGCAGCCGACACCGTGCTGCTGACAACAGTACCAAGGCCCAGCGTCG
CAGCTGCCTTGCCCACATACCCACTGACCTTGTACTTGTTTTGCAATAAC
CATGA
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protein sequence of jgi.p|Nanoce1779_2|591022

>mRNA_4990-protein ID=mRNA_4990-protein|Name=jgi.p|Nanoce1779_2|591022|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MVGVLSTSPAKLYGGGGLSLSRVPPEKASTVCAAIVRVDEPCFSLIHAVS
PLHDAHGTSLLLLLLFLLSSLFYCTCGWFKTSSVKSLFSSRGEIVTQKAD
RRLRATTKSACQGIGTWACHCSACPTFIGLSVQSASYVSLALLSSACSFL
CLWDSYAHITQ*
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mRNA from alignment at scaffold_12:191539..192593+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4990 ID=mRNA_4990|Name=jgi.p|Nanoce1779_2|591022|organism=Nannochloropsis oceanica|type=mRNA|length=1055bp|location=Sequence derived from alignment at scaffold_12:191539..192593+ (Nannochloropsis oceanica)
TTTTTGTATCGTGCTGTTAATGTTTACTTCGAAACCTACTTATCTCCTGG
CGTTGATAGCTGTTTTGGGCTTAACCCTCTGGTTGGATGGTGGGCGTTTT
GTCCACAAGTCCTGCTAAACTCTATGGAGGGGGTGGTCTCTCTCTGTCCC
GTGTTCCGCCTGAGAAAGCTTCCACTGTGTGCGCGGCAATCGTGAGAGTG
GATGAACCATGTTTCTCATTAATTCATGCCGTTTCGCCGCTCCATGACGC
GCACGGGACAAGCTTGTTGCTACTGTTACTGTTTTTGTTGTCATCCCTTT
TCTATTGTACGTGTGGTTGGTTTAAGACTTCGTCTGTCAAATCTCTCTTC
TCTTCCAGGGGGGAAATCGTGACACAGAAAGCCGACCGCAGGCTGCGGGC
GACCACAAAATCCGCGTGCCAAGGCATTGGAACTTGGGCCTGCCACTGCA
GCGCTTGTCCTACCTTTATCGGTCTCTCTGTTCAATCAGCCAGTTACGTT
TCTCTGGCCCTCCTCTCTTCCGCTTGTTCATTTCTTTGTCTATGGGATTC
CTATGCACATATCACACAGTGACGGGAGCCCCAGGGCAGAAAGGAAGACA
CATGCGGAAGCCGCATTGAGAAATGCGAAGCGTGTAGACTCTCCTTCCTC
CCTCGATCACTGTAAATTTGTATTCATATCTACTCAATGAAGCTGGATAC
TGCTGTGTCCCTTTACTGTTCCCGATGCACTTACTCTCTATCTCTCTATT
CACTTTGTCCGACATGCAACTTACCCCGATGGGTCTTACGCCGACTGCTG
GCCGGGTGGCACGTCGCATACGCACATACACCAATCTACACAATCACACA
CCCACTCTCTCTCTCTCTCTCACTTTCCTTCTCTCTAGACGTCCACGTAC
CAATCCCACCCGCTCTCCTCCAACATCGCCGGTGCCGTCATCAGAGACGG
GCACGCAGCCGACACCGTGCTGCTGACAACAGTACCAAGGCCCAGCGTCG
CAGCTGCCTTGCCCACATACCCACTGACCTTGTACTTGTTTTGCAATAAC
CATGA
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Coding sequence (CDS) from alignment at scaffold_12:191539..192593+

>mRNA_4990 ID=mRNA_4990|Name=jgi.p|Nanoce1779_2|591022|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_12:191539..192593+ (Nannochloropsis oceanica)
ATGGTGGGCGTTTTGTCCACAAGTCCTGCTAAACTCTATGGAGGGGGTGG
TCTCTCTCTGTCCCGTGTTCCGCCTGAGAAAGCTTCCACTGTGTGCGCGG
CAATCGTGAGAGTGGATGAACCATGTTTCTCATTAATTCATGCCGTTTCG
CCGCTCCATGACGCGCACGGGACAAGCTTGTTGCTACTGTTACTGTTTTT
GTTGTCATCCCTTTTCTATTGTACGTGTGGTTGGTTTAAGACTTCGTCTG
TCAAATCTCTCTTCTCTTCCAGGGGGGAAATCGTGACACAGAAAGCCGAC
CGCAGGCTGCGGGCGACCACAAAATCCGCGTGCCAAGGCATTGGAACTTG
GGCCTGCCACTGCAGCGCTTGTCCTACCTTTATCGGTCTCTCTGTTCAAT
CAGCCAGTTACGTTTCTCTGGCCCTCCTCTCTTCCGCTTGTTCATTTCTT
TGTCTATGGGATTCCTATGCACATATCACACAGTGA
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Synonyms
Publications