jgi.p|Nanoce1779_2|591021, mRNA_4989 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591021
Unique NamemRNA_4989
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length921
Alignment locationscaffold_12:190608..191528 +

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Properties
Property NameValue
TranscriptId591107
TrackFilteredModels2
ProteinId591021
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:190608..191528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591021gene_4989Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591021mRNA_4989-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4989CDS_4989Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4989 ID=mRNA_4989|Name=jgi.p|Nanoce1779_2|591021|organism=Nannochloropsis oceanica|type=mRNA|length=921bp
AGCCACACAAGGCAGACAAGGATATGGAACCACCATCACCACGAGGTATC
TTCTCCAACCTCTTCCGGAAGACTACGATGCCTCTTCCCCAAACTGCCCC
TCCCATTAGTGCCGCTGCTGCCCTTTCTATTCCGGGCACCGCCGCGAGCA
TAGACCAAGAGCGCCGGGAGCAGCGTCTGGCCAAAAACAGAGAAAGTGCA
CGTCAGAGTCGACGGCGTAAGAAGGAAAAGCTGGAGTTGCTGAGCGAGAG
AATGTGTGAGCTGAACGAGGAGCTTGAGGACCTTCGGCAAGCAACCGCGA
CAAGTATTGACTCCCTGGACATGCCCACATGTGAAGAACTCCACGCCTTG
CGGACATATCGCTTTGCCCGCTTGTATCGCATCATTTCGTCACCCCATAT
TTGCTTTTGGATGTGGCTGCACAGACAAAATTTTACATGTCCGCCGCCGT
CATCCTCCTCCTCCACGACCTCGGCCAGCAAAGTTGGAGAGCACCTGATG
CAACTTCGACAAGAGCAAGGGGGGCCACAAGGATGGGATGCTAGAGATGG
ACACAAACTGTGGCCGCTGCTTTGCTTCGAGCTGCAACTCAAGGGCGAGC
AAGAAGAGCGGGCCCGCGCCCTTTTTGGACAAGCGTCGAACGTCGAAATG
AAGGATGAAATGGAGGCCTTAGCTGGCGTGGTAGAGGCTGCCAGCGTTTT
GGAAAAAGACTTGAAGATCACAACTCAGCATATGCAGGCAAGAATGACTG
CAGTGCGACGGCTTCTGACGCCGGCACAGATAAAGATACTTGAGGGAGGG
CGAAATATTGAGGTGGAAAGAGGATGATGGATATGGAAGACATAAAGATG
TCTAAGTAAGGTGTGTAGACTGATTACTGATTGTAAATTTAAAGAAAAGA
GAAGAAAAATCAAGAGCGAGC
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protein sequence of jgi.p|Nanoce1779_2|591021

>mRNA_4989-protein ID=mRNA_4989-protein|Name=jgi.p|Nanoce1779_2|591021|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MEPPSPRGIFSNLFRKTTMPLPQTAPPISAAAALSIPGTAASIDQERREQ
RLAKNRESARQSRRRKKEKLELLSERMCELNEELEDLRQATATSIDSLDM
PTCEELHALRTYRFARLYRIISSPHICFWMWLHRQNFTCPPPSSSSSTTS
ASKVGEHLMQLRQEQGGPQGWDARDGHKLWPLLCFELQLKGEQEERARAL
FGQASNVEMKDEMEALAGVVEAASVLEKDLKITTQHMQARMTAVRRLLTP
AQIKILEGGRNIEVERG*
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mRNA from alignment at scaffold_12:190608..191528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4989 ID=mRNA_4989|Name=jgi.p|Nanoce1779_2|591021|organism=Nannochloropsis oceanica|type=mRNA|length=921bp|location=Sequence derived from alignment at scaffold_12:190608..191528+ (Nannochloropsis oceanica)
AGCCACACAAGGCAGACAAGGATATGGAACCACCATCACCACGAGGTATC
TTCTCCAACCTCTTCCGGAAGACTACGATGCCTCTTCCCCAAACTGCCCC
TCCCATTAGTGCCGCTGCTGCCCTTTCTATTCCGGGCACCGCCGCGAGCA
TAGACCAAGAGCGCCGGGAGCAGCGTCTGGCCAAAAACAGAGAAAGTGCA
CGTCAGAGTCGACGGCGTAAGAAGGAAAAGCTGGAGTTGCTGAGCGAGAG
AATGTGTGAGCTGAACGAGGAGCTTGAGGACCTTCGGCAAGCAACCGCGA
CAAGTATTGACTCCCTGGACATGCCCACATGTGAAGAACTCCACGCCTTG
CGGACATATCGCTTTGCCCGCTTGTATCGCATCATTTCGTCACCCCATAT
TTGCTTTTGGATGTGGCTGCACAGACAAAATTTTACATGTCCGCCGCCGT
CATCCTCCTCCTCCACGACCTCGGCCAGCAAAGTTGGAGAGCACCTGATG
CAACTTCGACAAGAGCAAGGGGGGCCACAAGGATGGGATGCTAGAGATGG
ACACAAACTGTGGCCGCTGCTTTGCTTCGAGCTGCAACTCAAGGGCGAGC
AAGAAGAGCGGGCCCGCGCCCTTTTTGGACAAGCGTCGAACGTCGAAATG
AAGGATGAAATGGAGGCCTTAGCTGGCGTGGTAGAGGCTGCCAGCGTTTT
GGAAAAAGACTTGAAGATCACAACTCAGCATATGCAGGCAAGAATGACTG
CAGTGCGACGGCTTCTGACGCCGGCACAGATAAAGATACTTGAGGGAGGG
CGAAATATTGAGGTGGAAAGAGGATGATGGATATGGAAGACATAAAGATG
TCTAAGTAAGGTGTGTAGACTGATTACTGATTGTAAATTTAAAGAAAAGA
GAAGAAAAATCAAGAGCGAGC
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Coding sequence (CDS) from alignment at scaffold_12:190608..191528+

>mRNA_4989 ID=mRNA_4989|Name=jgi.p|Nanoce1779_2|591021|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_12:190608..191528+ (Nannochloropsis oceanica)
ATGGAACCACCATCACCACGAGGTATCTTCTCCAACCTCTTCCGGAAGAC
TACGATGCCTCTTCCCCAAACTGCCCCTCCCATTAGTGCCGCTGCTGCCC
TTTCTATTCCGGGCACCGCCGCGAGCATAGACCAAGAGCGCCGGGAGCAG
CGTCTGGCCAAAAACAGAGAAAGTGCACGTCAGAGTCGACGGCGTAAGAA
GGAAAAGCTGGAGTTGCTGAGCGAGAGAATGTGTGAGCTGAACGAGGAGC
TTGAGGACCTTCGGCAAGCAACCGCGACAAGTATTGACTCCCTGGACATG
CCCACATGTGAAGAACTCCACGCCTTGCGGACATATCGCTTTGCCCGCTT
GTATCGCATCATTTCGTCACCCCATATTTGCTTTTGGATGTGGCTGCACA
GACAAAATTTTACATGTCCGCCGCCGTCATCCTCCTCCTCCACGACCTCG
GCCAGCAAAGTTGGAGAGCACCTGATGCAACTTCGACAAGAGCAAGGGGG
GCCACAAGGATGGGATGCTAGAGATGGACACAAACTGTGGCCGCTGCTTT
GCTTCGAGCTGCAACTCAAGGGCGAGCAAGAAGAGCGGGCCCGCGCCCTT
TTTGGACAAGCGTCGAACGTCGAAATGAAGGATGAAATGGAGGCCTTAGC
TGGCGTGGTAGAGGCTGCCAGCGTTTTGGAAAAAGACTTGAAGATCACAA
CTCAGCATATGCAGGCAAGAATGACTGCAGTGCGACGGCTTCTGACGCCG
GCACAGATAAAGATACTTGAGGGAGGGCGAAATATTGAGGTGGAAAGAGG
ATGA
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Synonyms
Publications