jgi.p|Nanoce1779_2|591019, mRNA_4988 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591019
Unique NamemRNA_4988
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1200
Alignment locationscaffold_12:189101..190300 -

Link to JBrowse

Properties
Property NameValue
TranscriptId591105
TrackFilteredModels2
ProteinId591019
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:189101..190300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591019gene_4988Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591019mRNA_4988-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4988CDS_4988Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4988 ID=mRNA_4988|Name=jgi.p|Nanoce1779_2|591019|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp
AACAGGCATAATGAAGCAGTCCGCGGCGCTTTTGTGCGTGCTGATGGGCG
TGGCCCAAGGCTTTGTCTTGCCGCAGCCGATGAGACTGGGGGAGGGTTGC
GCAAGCACCAAACAGTACGCGGAGACCACACCGGGCGACAGCAGCCGACT
GGGATTCTTGCAACGCGTGGTGGGGCAGGTGGCTGGCGTGGGGCTTGCGG
TGAACATGGCACCCTTGCTCATGGATGGTAAGGTCGGATTTGTGCAGCCG
GCGCAAGCGGCGGGCTTGGCCAAGATCAACAACGAGTTGGCGGGCTACGG
CTTGCCTCCTATTCTTGATGTTCCCGGAGGCTTCTCGCCATTGGTAGAAG
TGTACGGCAAAGCCGCGGGCGCCAGGAAAGAGCGTGATACGTTGTTGGTG
CAGTTCTTGTACCCGAGTTTGTGGGTGGTGAGCAAGCCCAGCATTGACAA
GAATGGGGAGGAAGGCACTATCTCGGCCGGGGACTACCAAAAGGGCGACT
CGGCCGCCTTCTTTGTGGGGGACGGGCCCGAATCCGGCAAGATCGACCAG
CAGTCGAACGAGTATTTTGGGGAGGTGGTAACCCGCGCCATCGGACAAAA
GAGCGCGAATGTCTACCAGAATTTCAAGGTGCTGAAAAAACGCCCGGGGG
CCAAGGGGTCGAATGGAGCGCAGTACACGATTGTGGAGTTTAAGTACGAG
CTCTTGACTGGCGCGGGCTTCACGGTGGACCGGAAGGGCGTGGCGAGCGT
GACGCAGGTCGGTAAGAATATACAGGCGTTGTGGATCGCCACGACGGCGA
CGCGCTGGAAGAAGATTGGGGATGACTGTATTACCATGGCCGACTCTTTC
CGGGTGTACGACGGAATCGCCCCTGCATAGACAGATGACAGTAGAGAAGG
GAGATAGAAAGGGAGAAAGGGAGAAAGGGAGAAAGGAGGGGAGGAACAGG
AAACAGCGAGCTTAGATTCAATCTATAGGAACAAGGGCGAGATCTCTCGT
GTGAGAGGCATTGTTGGCCGGATACATTGTGCGGGCACCCATCTGTCTGC
ATTTTAAACCCACCTTTAAAATGCCCCTGCTGACTGCAGATTTGACAGCA
ACTTGCGTTTTAAACAAGCAGAAAAAGAAAGAATATAAGGAAAAGAAACC
GTGTGCGCATGGCTTTTGTTGGGGAAGCGAGGCGACATTCTTTTTAACAG
back to top

protein sequence of jgi.p|Nanoce1779_2|591019

>mRNA_4988-protein ID=mRNA_4988-protein|Name=jgi.p|Nanoce1779_2|591019|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MKQSAALLCVLMGVAQGFVLPQPMRLGEGCASTKQYAETTPGDSSRLGFL
QRVVGQVAGVGLAVNMAPLLMDGKVGFVQPAQAAGLAKINNELAGYGLPP
ILDVPGGFSPLVEVYGKAAGARKERDTLLVQFLYPSLWVVSKPSIDKNGE
EGTISAGDYQKGDSAAFFVGDGPESGKIDQQSNEYFGEVVTRAIGQKSAN
VYQNFKVLKKRPGAKGSNGAQYTIVEFKYELLTGAGFTVDRKGVASVTQV
GKNIQALWIATTATRWKKIGDDCITMADSFRVYDGIAPA*
back to top

mRNA from alignment at scaffold_12:189101..190300-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4988 ID=mRNA_4988|Name=jgi.p|Nanoce1779_2|591019|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp|location=Sequence derived from alignment at scaffold_12:189101..190300- (Nannochloropsis oceanica)
AACAGGCATAATGAAGCAGTCCGCGGCGCTTTTGTGCGTGCTGATGGGCG
TGGCCCAAGGCTTTGTCTTGCCGCAGCCGATGAGACTGGGGGAGGGTTGC
GCAAGCACCAAACAGTACGCGGAGACCACACCGGGCGACAGCAGCCGACT
GGGATTCTTGCAACGCGTGGTGGGGCAGGTGGCTGGCGTGGGGCTTGCGG
TGAACATGGCACCCTTGCTCATGGATGGTAAGGTCGGATTTGTGCAGCCG
GCGCAAGCGGCGGGCTTGGCCAAGATCAACAACGAGTTGGCGGGCTACGG
CTTGCCTCCTATTCTTGATGTTCCCGGAGGCTTCTCGCCATTGGTAGAAG
TGTACGGCAAAGCCGCGGGCGCCAGGAAAGAGCGTGATACGTTGTTGGTG
CAGTTCTTGTACCCGAGTTTGTGGGTGGTGAGCAAGCCCAGCATTGACAA
GAATGGGGAGGAAGGCACTATCTCGGCCGGGGACTACCAAAAGGGCGACT
CGGCCGCCTTCTTTGTGGGGGACGGGCCCGAATCCGGCAAGATCGACCAG
CAGTCGAACGAGTATTTTGGGGAGGTGGTAACCCGCGCCATCGGACAAAA
GAGCGCGAATGTCTACCAGAATTTCAAGGTGCTGAAAAAACGCCCGGGGG
CCAAGGGGTCGAATGGAGCGCAGTACACGATTGTGGAGTTTAAGTACGAG
CTCTTGACTGGCGCGGGCTTCACGGTGGACCGGAAGGGCGTGGCGAGCGT
GACGCAGGTCGGTAAGAATATACAGGCGTTGTGGATCGCCACGACGGCGA
CGCGCTGGAAGAAGATTGGGGATGACTGTATTACCATGGCCGACTCTTTC
CGGGTGTACGACGGAATCGCCCCTGCATAGACAGATGACAGTAGAGAAGG
GAGATAGAAAGGGAGAAAGGGAGAAAGGGAGAAAGGAGGGGAGGAACAGG
AAACAGCGAGCTTAGATTCAATCTATAGGAACAAGGGCGAGATCTCTCGT
GTGAGAGGCATTGTTGGCCGGATACATTGTGCGGGCACCCATCTGTCTGC
ATTTTAAACCCACCTTTAAAATGCCCCTGCTGACTGCAGATTTGACAGCA
ACTTGCGTTTTAAACAAGCAGAAAAAGAAAGAATATAAGGAAAAGAAACC
GTGTGCGCATGGCTTTTGTTGGGGAAGCGAGGCGACATTCTTTTTAACAG
back to top

Coding sequence (CDS) from alignment at scaffold_12:189101..190300-

>mRNA_4988 ID=mRNA_4988|Name=jgi.p|Nanoce1779_2|591019|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at scaffold_12:189101..190300- (Nannochloropsis oceanica)
ATGAAGCAGTCCGCGGCGCTTTTGTGCGTGCTGATGGGCGTGGCCCAAGG
CTTTGTCTTGCCGCAGCCGATGAGACTGGGGGAGGGTTGCGCAAGCACCA
AACAGTACGCGGAGACCACACCGGGCGACAGCAGCCGACTGGGATTCTTG
CAACGCGTGGTGGGGCAGGTGGCTGGCGTGGGGCTTGCGGTGAACATGGC
ACCCTTGCTCATGGATGGTAAGGTCGGATTTGTGCAGCCGGCGCAAGCGG
CGGGCTTGGCCAAGATCAACAACGAGTTGGCGGGCTACGGCTTGCCTCCT
ATTCTTGATGTTCCCGGAGGCTTCTCGCCATTGGTAGAAGTGTACGGCAA
AGCCGCGGGCGCCAGGAAAGAGCGTGATACGTTGTTGGTGCAGTTCTTGT
ACCCGAGTTTGTGGGTGGTGAGCAAGCCCAGCATTGACAAGAATGGGGAG
GAAGGCACTATCTCGGCCGGGGACTACCAAAAGGGCGACTCGGCCGCCTT
CTTTGTGGGGGACGGGCCCGAATCCGGCAAGATCGACCAGCAGTCGAACG
AGTATTTTGGGGAGGTGGTAACCCGCGCCATCGGACAAAAGAGCGCGAAT
GTCTACCAGAATTTCAAGGTGCTGAAAAAACGCCCGGGGGCCAAGGGGTC
GAATGGAGCGCAGTACACGATTGTGGAGTTTAAGTACGAGCTCTTGACTG
GCGCGGGCTTCACGGTGGACCGGAAGGGCGTGGCGAGCGTGACGCAGGTC
GGTAAGAATATACAGGCGTTGTGGATCGCCACGACGGCGACGCGCTGGAA
GAAGATTGGGGATGACTGTATTACCATGGCCGACTCTTTCCGGGTGTACG
ACGGAATCGCCCCTGCATAG
back to top
Synonyms
Publications