jgi.p|Nanoce1779_2|671172, mRNA_4987 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|671172
Unique Name	mRNA_4987
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	775
Alignment location	scaffold_12:188205..188979 +

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Properties


Property Name	Value
TranscriptId	671258
Track	FilteredModels2
ProteinId	671172

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:188205..188979 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671172	gene_4987	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671172	mRNA_4987-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4987	CDS_4987	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:188205..188979+
coding sequence from alignment at scaffold_12:188205..188979+

mRNA sequence

>mRNA_4987 ID=mRNA_4987|Name=jgi.p|Nanoce1779_2|671172|organism=Nannochloropsis oceanica|type=mRNA|length=775bp
ATGGCGGCCACCATCACCACGGGGTCTAGGCTATTACCACCCCCTAAGTC
CACAAAAGCTGACAATGCCTCTTTTGGTAGCAGTTTAAAGGCGGGCTTCC
TCACCAAGTCTTCCTCGCGAGATGCACAGTATCATAACAGCAGTAGTAGC
GGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCGA
CAACAACACCCAAATCGCTGTTTCCATGTCCTCGCCCTCGTCTGCATCAG
CAGAGTTATTGGCTGAGAAGATCTTGTCTTCCCCTTTGCTTCGAAAGGCC
CTCGAGAATCCTCGCTTCCAAGTCATTTTTACCGACCTCGGCTCCGACCC
GCAAGCTACCCTTGTCCGCTATCAGCATGACAACGCCGCCATGGGTTTCC
TGAGAGGGCTCATGGGGGCTTTAGGCGAGCATTTTGAAGAGTTGGGAAAG
CAGCAGCAGCAGCAGTCAGGCCAGAACAAGACCAACGCCGCATGTCCCTT
GATGCAGGCAGCTCTCGAGAAGGCAGATAAGCAGAAAATTCAGCCGGTGA
ATGATCTCGAACAAGACAAGGCAGAGCAAGAGGCCGTCAATCGCATTTTG
CGTGACCCAGAGCTGCGGAACCTTCTTCTCGATCCAACGATGCAGACGGT
ACTTCAAAGCTTTTCAGAGAGCGATAAGAATAGGGGCTCGGTGTTACACA
AGTACATTCCATACCCGATCATCGCCGCCAAGCTGGGTAAGCTTGCTGAT
GCGGGCCTTATTCAGACTAAATGAT

protein sequence of jgi.p|Nanoce1779_2|671172

>mRNA_4987-protein ID=mRNA_4987-protein|Name=jgi.p|Nanoce1779_2|671172|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MAATITTGSRLLPPPKSTKADNASFGSSLKAGFLTKSSSRDAQYHNSSSS
GSSSSSSSSSNSSSSSDNNTQIAVSMSSPSSASAELLAEKILSSPLLRKA
LENPRFQVIFTDLGSDPQATLVRYQHDNAAMGFLRGLMGALGEHFEELGK
QQQQQSGQNKTNAACPLMQAALEKADKQKIQPVNDLEQDKAEQEAVNRIL
RDPELRNLLLDPTMQTVLQSFSESDKNRGSVLHKYIPYPIIAAKLGKLAD
AGLIQTK*

mRNA from alignment at scaffold_12:188205..188979+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4987 ID=mRNA_4987|Name=jgi.p|Nanoce1779_2|671172|organism=Nannochloropsis oceanica|type=mRNA|length=775bp|location=Sequence derived from alignment at scaffold_12:188205..188979+ (Nannochloropsis oceanica)
ATGGCGGCCACCATCACCACGGGGTCTAGGCTATTACCACCCCCTAAGTC
CACAAAAGCTGACAATGCCTCTTTTGGTAGCAGTTTAAAGGCGGGCTTCC
TCACCAAGTCTTCCTCGCGAGATGCACAGTATCATAACAGCAGTAGTAGC
GGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCGA
CAACAACACCCAAATCGCTGTTTCCATGTCCTCGCCCTCGTCTGCATCAG
CAGAGTTATTGGCTGAGAAGATCTTGTCTTCCCCTTTGCTTCGAAAGGCC
CTCGAGAATCCTCGCTTCCAAGTCATTTTTACCGACCTCGGCTCCGACCC
GCAAGCTACCCTTGTCCGCTATCAGCATGACAACGCCGCCATGGGTTTCC
TGAGAGGGCTCATGGGGGCTTTAGGCGAGCATTTTGAAGAGTTGGGAAAG
CAGCAGCAGCAGCAGTCAGGCCAGAACAAGACCAACGCCGCATGTCCCTT
GATGCAGGCAGCTCTCGAGAAGGCAGATAAGCAGAAAATTCAGCCGGTGA
ATGATCTCGAACAAGACAAGGCAGAGCAAGAGGCCGTCAATCGCATTTTG
CGTGACCCAGAGCTGCGGAACCTTCTTCTCGATCCAACGATGCAGACGGT
ACTTCAAAGCTTTTCAGAGAGCGATAAGAATAGGGGCTCGGTGTTACACA
AGTACATTCCATACCCGATCATCGCCGCCAAGCTGGGTAAGCTTGCTGAT
GCGGGCCTTATTCAGACTAAATGAT

Coding sequence (CDS) from alignment at scaffold_12:188205..188979+

>mRNA_4987 ID=mRNA_4987|Name=jgi.p|Nanoce1779_2|671172|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_12:188205..188979+ (Nannochloropsis oceanica)
ATGGCGGCCACCATCACCACGGGGTCTAGGCTATTACCACCCCCTAAGTC
CACAAAAGCTGACAATGCCTCTTTTGGTAGCAGTTTAAAGGCGGGCTTCC
TCACCAAGTCTTCCTCGCGAGATGCACAGTATCATAACAGCAGTAGTAGC
GGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCGA
CAACAACACCCAAATCGCTGTTTCCATGTCCTCGCCCTCGTCTGCATCAG
CAGAGTTATTGGCTGAGAAGATCTTGTCTTCCCCTTTGCTTCGAAAGGCC
CTCGAGAATCCTCGCTTCCAAGTCATTTTTACCGACCTCGGCTCCGACCC
GCAAGCTACCCTTGTCCGCTATCAGCATGACAACGCCGCCATGGGTTTCC
TGAGAGGGCTCATGGGGGCTTTAGGCGAGCATTTTGAAGAGTTGGGAAAG
CAGCAGCAGCAGCAGTCAGGCCAGAACAAGACCAACGCCGCATGTCCCTT
GATGCAGGCAGCTCTCGAGAAGGCAGATAAGCAGAAAATTCAGCCGGTGA
ATGATCTCGAACAAGACAAGGCAGAGCAAGAGGCCGTCAATCGCATTTTG
CGTGACCCAGAGCTGCGGAACCTTCTTCTCGATCCAACGATGCAGACGGT
ACTTCAAAGCTTTTCAGAGAGCGATAAGAATAGGGGCTCGGTGTTACACA
AGTACATTCCATACCCGATCATCGCCGCCAAGCTGGGTAAGCTTGCTGAT
GCGGGCCTTATTCAGACTAAATGA

Synonyms

Publications