jgi.p|Nanoce1779_2|591018, mRNA_4986 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591018
Unique Name	mRNA_4986
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2993
Alignment location	scaffold_12:184761..187753 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591104
Track	FilteredModels2
ProteinId	591018

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:184761..187753 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591018	gene_4986	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591018	mRNA_4986-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4986	CDS_4986	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:184761..187753-
coding sequence from alignment at scaffold_12:184761..187753-

mRNA sequence

>mRNA_4986 ID=mRNA_4986|Name=jgi.p|Nanoce1779_2|591018|organism=Nannochloropsis oceanica|type=mRNA|length=2993bp
ACAGCCATGCAGATTCTTACCGTGCTCAAAAGGCATCCGCTGTGGAGACT
AAACACGCCTCTGGTGGGCTTCTTGGCCGCTGTCTGCGTCTTTCCCTTCA
TCTTCTCAACGTTGAGCAACAACGACCCAAATGAACACCAAATCGTCATC
ACAAGGACTCCACACAAGGCCTTGCGGTACGAGGCGGCCTCCGTGGCGGA
GGACAGGGACAAAGTAGCACCGGTGCGGAAGCCCAAGCCAGAACAGCGGG
CATCCCTTCGACAAGAAAAGTCTGCCGACACGGCCACCGACATAACTCAA
AGGGATAAAGCAGCTCCTGCTGCTGCTGAACATAAGGCCCCCCCTGCTGC
TGCTGCCGAATCCGAGGCGGCGATGATACCTGCCACTCGCGAGCCCATCA
AATTAAATGCGGGCTTCATCACGGTGGAAACCTCCGACCCGAGCAAGAAG
GCGCTCGTTGCTCATCGACAAGACAGTGACATCCACATCTACATGGACTG
GACCCTGCCGGCGGAACGCTTCTCGCTGCTCAACTACCGGTCGCTTGAAT
CTGTTCTCACTCAGTATCCCAATGCAAAGGTCAGAACATTGGTGGTTGCA
CCTTCCAGGGCCACGCGTCACGACTACGCCAACACTTTGTCGTACATGCA
ATTCGAGAAGTATCAGAAGCGAGGCTACAACGTGCAGTTTGATATTGTGT
CGGAGAAATCTCTGCTCGAGCTGCAGGATCCCAATCGCCCCGGATTTACT
TATTTCACAACCGTTCTATTCCCTCGTCTACAAAAGACTATTTTTGACGA
ATCCTTCTTCACCAAGACGGAAAATGCCGTTCAAGATTTCAAGACTAACC
ACTTTATTCGCCTCTTCCGGCTTTGGCAGACGGGTGGCATTTACATGGAC
TTCACAATGCTTTTAACAAAGCCCTTGCCAACAGGCAGGCGAATATGGAG
CTTCGCGGAGGATTGCGGCACCGTAGCTTCCCCGGCCACAGAGGCGGTCG
AGGCCACCAGCACGTTTGATGATGGGAAGTGGCGTTATTCGGGCAGTCAG
CATCCTTACGTGTTACAACTCAAGGCCCAGGACCCCATCGTTGGGTGTGT
GTTGGCTCGCTTTGACGATAAGGGCGATTCATTGCACGAATGCATGCTCA
AGAGTCAAAAGGGTGGGGCGGATTGCATTGAGGGGGCGTTCCAACAGTGT
GCCAAGCCCTCGGTCGATGTCCAGAGCGATGTGCTGGAGACGCGCGCCTC
AGTCGATTGGCCCTCATGTAATTCCACCGGCAACAAAACCAAGGGTGTGT
CCTCAATTCCTCCCGCTGGATCTGTTGCCGTCGTGGCAATGGGTCGAGAG
GCTATGGAAGGAAACTGGACGGCATCATCATTTACGGCCGCTCTCATTGG
AAAATACATCCACCTAGATCGATGGCATCCCTCGCAAATCGACCCGCAAT
GCGCTCGCAAGTGCGATTACTATGCCGATGCGCTAGCCCGTGTCCGGGCC
CCTTTTCACCTGACCAAATTTTCCCTCTCCAAAGCCCACGCGGAGGCCTC
CAACTATATTTGTGCGCCGTCTGTCATCATGCCGGGTGTGATCAAGGCCG
CGAGCTCCAGCTTGTTTGGTGCTATTGCCAAGCATCCGCAAGTTTTGCAC
CCATTGCGCGGCTCGAATTTCAAGGAGACGGGCGTGTATATGAATATCCC
GGGCCGCGACCACTTCAAGGACCGCTTGCAGGCTTTCCCCTTCATCGAGG
CGGATGAGAATTTCGTCACGACGGATGGTACCGTGTACTACATTAATGGG
GATGAAAGCCCGGAGCAGATCGTGGCCGACAGCCCTAGCGCCAAGGCAAT
CATCTCTCTCAGGGACCCAACCTCCCGAGCCTATAGTCAATACCGCAACA
CTTTTTTTAACGGTACCGAGTCGTTTGCCGAGGCCGTGCGCGTGTCCGTG
CCGATATTGCGTAAGTGCTATCAGGAGCATTTGGCACGCGTGGACTTGCG
CGCTGTCTTAAACGAGAGCAAGGGGGCAGATTTCTGGAAAAAGATTGATT
TTTGCACGGCCCCACTCATGCGCACTCCGACCCGGCGCACGATCCAGACA
TCGTTGTATCTGCCTCAATTGATGCGCTGGGCATCCGTCATGGGGATCGA
TCGAATTTTGGTGGTGACAAAGGAGGAGTTGAGCCGGGACCCCAAGCCTG
TCGTGGCCGAGGTTTTCAAATTCCTGGGCCTATGCCCCTTTGAGGAGGCC
TTTGCGGCCGAGGTCGTGCGCAAGATAGATGTGCCAAAGGGCTATGACTT
GACGGAGGGCTCATTGATGGACTTGAACGAGGCATTTCAACCCTGGAACC
ATGCGCTCGCTCAGCTTTTGGGCAGAGACCTTGGTTGGCTGAACCACGAA
GAAGCGTTCGTGAAGTCTAAGCTGCATTTCCACAGAATCGTGATCTTCCA
GAGCGTTCCCTCAGTCAAATCTCCGTGCAAGGCTTGCGAAGAGACGCATG
CCCTTTTGGCGGCGCAACAAGGGGTAGATGCTGCCACTGATATTGAGGTT
GTCGCATTACGCCACGACGATCCGGTCTGGGCAGAGGTGGTCAAGGCGGC
AGGAACGCCAAATATTGTTACACAGGACAGCCTGCCGTACGTCTTTGTGC
GAGGTGAATACATGGGCAGCCTGAAAGAAGAAGGCAAGCAGAAAGATGGT
AGCCAAAGCAAGCTGGCAGCTGCCTTATCGGCGGCCAGCAAGCAGGTTGA
AGCCACTGACTTTGCATCGTATTACGCAGATTGACTCAAGAACCGGTGAA
CAAAGGGGAAGAGGGAAAGCGTACCACATATGAAAATGACGAAGGAAATT
TGTAGAATGAAAAAAGCAACGCTGAGAGGCATCTTAAAAAATAGGTAGTC
GATATAAATTACAAGTGATTCTGCAATAATGCGATCCTTGCGCTCTCTCG
ACGCCAAAACATTAAAGAAAGTGATTTTGCTAGAGCGCAATGA

protein sequence of jgi.p|Nanoce1779_2|591018

>mRNA_4986-protein ID=mRNA_4986-protein|Name=jgi.p|Nanoce1779_2|591018|organism=Nannochloropsis oceanica|type=polypeptide|length=926bp
MQILTVLKRHPLWRLNTPLVGFLAAVCVFPFIFSTLSNNDPNEHQIVITR
TPHKALRYEAASVAEDRDKVAPVRKPKPEQRASLRQEKSADTATDITQRD
KAAPAAAEHKAPPAAAAESEAAMIPATREPIKLNAGFITVETSDPSKKAL
VAHRQDSDIHIYMDWTLPAERFSLLNYRSLESVLTQYPNAKVRTLVVAPS
RATRHDYANTLSYMQFEKYQKRGYNVQFDIVSEKSLLELQDPNRPGFTYF
TTVLFPRLQKTIFDESFFTKTENAVQDFKTNHFIRLFRLWQTGGIYMDFT
MLLTKPLPTGRRIWSFAEDCGTVASPATEAVEATSTFDDGKWRYSGSQHP
YVLQLKAQDPIVGCVLARFDDKGDSLHECMLKSQKGGADCIEGAFQQCAK
PSVDVQSDVLETRASVDWPSCNSTGNKTKGVSSIPPAGSVAVVAMGREAM
EGNWTASSFTAALIGKYIHLDRWHPSQIDPQCARKCDYYADALARVRAPF
HLTKFSLSKAHAEASNYICAPSVIMPGVIKAASSSLFGAIAKHPQVLHPL
RGSNFKETGVYMNIPGRDHFKDRLQAFPFIEADENFVTTDGTVYYINGDE
SPEQIVADSPSAKAIISLRDPTSRAYSQYRNTFFNGTESFAEAVRVSVPI
LRKCYQEHLARVDLRAVLNESKGADFWKKIDFCTAPLMRTPTRRTIQTSL
YLPQLMRWASVMGIDRILVVTKEELSRDPKPVVAEVFKFLGLCPFEEAFA
AEVVRKIDVPKGYDLTEGSLMDLNEAFQPWNHALAQLLGRDLGWLNHEEA
FVKSKLHFHRIVIFQSVPSVKSPCKACEETHALLAAQQGVDAATDIEVVA
LRHDDPVWAEVVKAAGTPNIVTQDSLPYVFVRGEYMGSLKEEGKQKDGSQ
SKLAAALSAASKQVEATDFASYYAD*

mRNA from alignment at scaffold_12:184761..187753-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4986 ID=mRNA_4986|Name=jgi.p|Nanoce1779_2|591018|organism=Nannochloropsis oceanica|type=mRNA|length=2993bp|location=Sequence derived from alignment at scaffold_12:184761..187753- (Nannochloropsis oceanica)
ACAGCCATGCAGATTCTTACCGTGCTCAAAAGGCATCCGCTGTGGAGACT
AAACACGCCTCTGGTGGGCTTCTTGGCCGCTGTCTGCGTCTTTCCCTTCA
TCTTCTCAACGTTGAGCAACAACGACCCAAATGAACACCAAATCGTCATC
ACAAGGACTCCACACAAGGCCTTGCGGTACGAGGCGGCCTCCGTGGCGGA
GGACAGGGACAAAGTAGCACCGGTGCGGAAGCCCAAGCCAGAACAGCGGG
CATCCCTTCGACAAGAAAAGTCTGCCGACACGGCCACCGACATAACTCAA
AGGGATAAAGCAGCTCCTGCTGCTGCTGAACATAAGGCCCCCCCTGCTGC
TGCTGCCGAATCCGAGGCGGCGATGATACCTGCCACTCGCGAGCCCATCA
AATTAAATGCGGGCTTCATCACGGTGGAAACCTCCGACCCGAGCAAGAAG
GCGCTCGTTGCTCATCGACAAGACAGTGACATCCACATCTACATGGACTG
GACCCTGCCGGCGGAACGCTTCTCGCTGCTCAACTACCGGTCGCTTGAAT
CTGTTCTCACTCAGTATCCCAATGCAAAGGTCAGAACATTGGTGGTTGCA
CCTTCCAGGGCCACGCGTCACGACTACGCCAACACTTTGTCGTACATGCA
ATTCGAGAAGTATCAGAAGCGAGGCTACAACGTGCAGTTTGATATTGTGT
CGGAGAAATCTCTGCTCGAGCTGCAGGATCCCAATCGCCCCGGATTTACT
TATTTCACAACCGTTCTATTCCCTCGTCTACAAAAGACTATTTTTGACGA
ATCCTTCTTCACCAAGACGGAAAATGCCGTTCAAGATTTCAAGACTAACC
ACTTTATTCGCCTCTTCCGGCTTTGGCAGACGGGTGGCATTTACATGGAC
TTCACAATGCTTTTAACAAAGCCCTTGCCAACAGGCAGGCGAATATGGAG
CTTCGCGGAGGATTGCGGCACCGTAGCTTCCCCGGCCACAGAGGCGGTCG
AGGCCACCAGCACGTTTGATGATGGGAAGTGGCGTTATTCGGGCAGTCAG
CATCCTTACGTGTTACAACTCAAGGCCCAGGACCCCATCGTTGGGTGTGT
GTTGGCTCGCTTTGACGATAAGGGCGATTCATTGCACGAATGCATGCTCA
AGAGTCAAAAGGGTGGGGCGGATTGCATTGAGGGGGCGTTCCAACAGTGT
GCCAAGCCCTCGGTCGATGTCCAGAGCGATGTGCTGGAGACGCGCGCCTC
AGTCGATTGGCCCTCATGTAATTCCACCGGCAACAAAACCAAGGGTGTGT
CCTCAATTCCTCCCGCTGGATCTGTTGCCGTCGTGGCAATGGGTCGAGAG
GCTATGGAAGGAAACTGGACGGCATCATCATTTACGGCCGCTCTCATTGG
AAAATACATCCACCTAGATCGATGGCATCCCTCGCAAATCGACCCGCAAT
GCGCTCGCAAGTGCGATTACTATGCCGATGCGCTAGCCCGTGTCCGGGCC
CCTTTTCACCTGACCAAATTTTCCCTCTCCAAAGCCCACGCGGAGGCCTC
CAACTATATTTGTGCGCCGTCTGTCATCATGCCGGGTGTGATCAAGGCCG
CGAGCTCCAGCTTGTTTGGTGCTATTGCCAAGCATCCGCAAGTTTTGCAC
CCATTGCGCGGCTCGAATTTCAAGGAGACGGGCGTGTATATGAATATCCC
GGGCCGCGACCACTTCAAGGACCGCTTGCAGGCTTTCCCCTTCATCGAGG
CGGATGAGAATTTCGTCACGACGGATGGTACCGTGTACTACATTAATGGG
GATGAAAGCCCGGAGCAGATCGTGGCCGACAGCCCTAGCGCCAAGGCAAT
CATCTCTCTCAGGGACCCAACCTCCCGAGCCTATAGTCAATACCGCAACA
CTTTTTTTAACGGTACCGAGTCGTTTGCCGAGGCCGTGCGCGTGTCCGTG
CCGATATTGCGTAAGTGCTATCAGGAGCATTTGGCACGCGTGGACTTGCG
CGCTGTCTTAAACGAGAGCAAGGGGGCAGATTTCTGGAAAAAGATTGATT
TTTGCACGGCCCCACTCATGCGCACTCCGACCCGGCGCACGATCCAGACA
TCGTTGTATCTGCCTCAATTGATGCGCTGGGCATCCGTCATGGGGATCGA
TCGAATTTTGGTGGTGACAAAGGAGGAGTTGAGCCGGGACCCCAAGCCTG
TCGTGGCCGAGGTTTTCAAATTCCTGGGCCTATGCCCCTTTGAGGAGGCC
TTTGCGGCCGAGGTCGTGCGCAAGATAGATGTGCCAAAGGGCTATGACTT
GACGGAGGGCTCATTGATGGACTTGAACGAGGCATTTCAACCCTGGAACC
ATGCGCTCGCTCAGCTTTTGGGCAGAGACCTTGGTTGGCTGAACCACGAA
GAAGCGTTCGTGAAGTCTAAGCTGCATTTCCACAGAATCGTGATCTTCCA
GAGCGTTCCCTCAGTCAAATCTCCGTGCAAGGCTTGCGAAGAGACGCATG
CCCTTTTGGCGGCGCAACAAGGGGTAGATGCTGCCACTGATATTGAGGTT
GTCGCATTACGCCACGACGATCCGGTCTGGGCAGAGGTGGTCAAGGCGGC
AGGAACGCCAAATATTGTTACACAGGACAGCCTGCCGTACGTCTTTGTGC
GAGGTGAATACATGGGCAGCCTGAAAGAAGAAGGCAAGCAGAAAGATGGT
AGCCAAAGCAAGCTGGCAGCTGCCTTATCGGCGGCCAGCAAGCAGGTTGA
AGCCACTGACTTTGCATCGTATTACGCAGATTGACTCAAGAACCGGTGAA
CAAAGGGGAAGAGGGAAAGCGTACCACATATGAAAATGACGAAGGAAATT
TGTAGAATGAAAAAAGCAACGCTGAGAGGCATCTTAAAAAATAGGTAGTC
GATATAAATTACAAGTGATTCTGCAATAATGCGATCCTTGCGCTCTCTCG
ACGCCAAAACATTAAAGAAAGTGATTTTGCTAGAGCGCAATGA

Coding sequence (CDS) from alignment at scaffold_12:184761..187753-

>mRNA_4986 ID=mRNA_4986|Name=jgi.p|Nanoce1779_2|591018|organism=Nannochloropsis oceanica|type=CDS|length=2778bp|location=Sequence derived from alignment at scaffold_12:184761..187753- (Nannochloropsis oceanica)
ATGCAGATTCTTACCGTGCTCAAAAGGCATCCGCTGTGGAGACTAAACAC
GCCTCTGGTGGGCTTCTTGGCCGCTGTCTGCGTCTTTCCCTTCATCTTCT
CAACGTTGAGCAACAACGACCCAAATGAACACCAAATCGTCATCACAAGG
ACTCCACACAAGGCCTTGCGGTACGAGGCGGCCTCCGTGGCGGAGGACAG
GGACAAAGTAGCACCGGTGCGGAAGCCCAAGCCAGAACAGCGGGCATCCC
TTCGACAAGAAAAGTCTGCCGACACGGCCACCGACATAACTCAAAGGGAT
AAAGCAGCTCCTGCTGCTGCTGAACATAAGGCCCCCCCTGCTGCTGCTGC
CGAATCCGAGGCGGCGATGATACCTGCCACTCGCGAGCCCATCAAATTAA
ATGCGGGCTTCATCACGGTGGAAACCTCCGACCCGAGCAAGAAGGCGCTC
GTTGCTCATCGACAAGACAGTGACATCCACATCTACATGGACTGGACCCT
GCCGGCGGAACGCTTCTCGCTGCTCAACTACCGGTCGCTTGAATCTGTTC
TCACTCAGTATCCCAATGCAAAGGTCAGAACATTGGTGGTTGCACCTTCC
AGGGCCACGCGTCACGACTACGCCAACACTTTGTCGTACATGCAATTCGA
GAAGTATCAGAAGCGAGGCTACAACGTGCAGTTTGATATTGTGTCGGAGA
AATCTCTGCTCGAGCTGCAGGATCCCAATCGCCCCGGATTTACTTATTTC
ACAACCGTTCTATTCCCTCGTCTACAAAAGACTATTTTTGACGAATCCTT
CTTCACCAAGACGGAAAATGCCGTTCAAGATTTCAAGACTAACCACTTTA
TTCGCCTCTTCCGGCTTTGGCAGACGGGTGGCATTTACATGGACTTCACA
ATGCTTTTAACAAAGCCCTTGCCAACAGGCAGGCGAATATGGAGCTTCGC
GGAGGATTGCGGCACCGTAGCTTCCCCGGCCACAGAGGCGGTCGAGGCCA
CCAGCACGTTTGATGATGGGAAGTGGCGTTATTCGGGCAGTCAGCATCCT
TACGTGTTACAACTCAAGGCCCAGGACCCCATCGTTGGGTGTGTGTTGGC
TCGCTTTGACGATAAGGGCGATTCATTGCACGAATGCATGCTCAAGAGTC
AAAAGGGTGGGGCGGATTGCATTGAGGGGGCGTTCCAACAGTGTGCCAAG
CCCTCGGTCGATGTCCAGAGCGATGTGCTGGAGACGCGCGCCTCAGTCGA
TTGGCCCTCATGTAATTCCACCGGCAACAAAACCAAGGGTGTGTCCTCAA
TTCCTCCCGCTGGATCTGTTGCCGTCGTGGCAATGGGTCGAGAGGCTATG
GAAGGAAACTGGACGGCATCATCATTTACGGCCGCTCTCATTGGAAAATA
CATCCACCTAGATCGATGGCATCCCTCGCAAATCGACCCGCAATGCGCTC
GCAAGTGCGATTACTATGCCGATGCGCTAGCCCGTGTCCGGGCCCCTTTT
CACCTGACCAAATTTTCCCTCTCCAAAGCCCACGCGGAGGCCTCCAACTA
TATTTGTGCGCCGTCTGTCATCATGCCGGGTGTGATCAAGGCCGCGAGCT
CCAGCTTGTTTGGTGCTATTGCCAAGCATCCGCAAGTTTTGCACCCATTG
CGCGGCTCGAATTTCAAGGAGACGGGCGTGTATATGAATATCCCGGGCCG
CGACCACTTCAAGGACCGCTTGCAGGCTTTCCCCTTCATCGAGGCGGATG
AGAATTTCGTCACGACGGATGGTACCGTGTACTACATTAATGGGGATGAA
AGCCCGGAGCAGATCGTGGCCGACAGCCCTAGCGCCAAGGCAATCATCTC
TCTCAGGGACCCAACCTCCCGAGCCTATAGTCAATACCGCAACACTTTTT
TTAACGGTACCGAGTCGTTTGCCGAGGCCGTGCGCGTGTCCGTGCCGATA
TTGCGTAAGTGCTATCAGGAGCATTTGGCACGCGTGGACTTGCGCGCTGT
CTTAAACGAGAGCAAGGGGGCAGATTTCTGGAAAAAGATTGATTTTTGCA
CGGCCCCACTCATGCGCACTCCGACCCGGCGCACGATCCAGACATCGTTG
TATCTGCCTCAATTGATGCGCTGGGCATCCGTCATGGGGATCGATCGAAT
TTTGGTGGTGACAAAGGAGGAGTTGAGCCGGGACCCCAAGCCTGTCGTGG
CCGAGGTTTTCAAATTCCTGGGCCTATGCCCCTTTGAGGAGGCCTTTGCG
GCCGAGGTCGTGCGCAAGATAGATGTGCCAAAGGGCTATGACTTGACGGA
GGGCTCATTGATGGACTTGAACGAGGCATTTCAACCCTGGAACCATGCGC
TCGCTCAGCTTTTGGGCAGAGACCTTGGTTGGCTGAACCACGAAGAAGCG
TTCGTGAAGTCTAAGCTGCATTTCCACAGAATCGTGATCTTCCAGAGCGT
TCCCTCAGTCAAATCTCCGTGCAAGGCTTGCGAAGAGACGCATGCCCTTT
TGGCGGCGCAACAAGGGGTAGATGCTGCCACTGATATTGAGGTTGTCGCA
TTACGCCACGACGATCCGGTCTGGGCAGAGGTGGTCAAGGCGGCAGGAAC
GCCAAATATTGTTACACAGGACAGCCTGCCGTACGTCTTTGTGCGAGGTG
AATACATGGGCAGCCTGAAAGAAGAAGGCAAGCAGAAAGATGGTAGCCAA
AGCAAGCTGGCAGCTGCCTTATCGGCGGCCAGCAAGCAGGTTGAAGCCAC
TGACTTTGCATCGTATTACGCAGATTGA

Synonyms

Publications