jgi.p|Nanoce1779_2|591017, mRNA_4985 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591017
Unique Name	mRNA_4985
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2233
Alignment location	scaffold_12:182515..184747 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591103
Track	FilteredModels2
ProteinId	591017

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:182515..184747 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591017	gene_4985	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591017	mRNA_4985-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4985	CDS_4985	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:182515..184747+
coding sequence from alignment at scaffold_12:182515..184747+

mRNA sequence

>mRNA_4985 ID=mRNA_4985|Name=jgi.p|Nanoce1779_2|591017|organism=Nannochloropsis oceanica|type=mRNA|length=2233bp
GTGTCACCGCGCAGAGACATCGTCCTCATTTATCTCCTTCTTCGGCGTAG
CTGCTAGAGGTCAAGAGGGATGTGTTGTATATATGATCAGGCCTGGGGCG
ATGGCGAAGCTAAACGTTGCGGCGGCACAGTGTCGTCATTTTCATTAACT
TCATTTTGCCCACCTCTAACCTACGACCCAGGTCATACCAAGCCATTACT
GCAGCAGTACCGGGATGTCTTTGACCTTGGTTTTACTTAACCGGCTATGG
TGTCTTTCCACCCCATATTTGGCGAGGGGTTTTGGCTACCACTTTCGCGC
TTATCAACCTCCTCCATCCCACGACTTGCCTTTCAACGAGGATGCCTGGT
AGGCCAGGAGCCACCGACAATCTTTAACCTTCCCTTCGCCTACTCTCGCT
TGCAAGAGGGCTCGACGTGTCTAGCTGCCGCGACCACAGAGCTTACCACG
ACCGCGGAACCCCTGCCACCGAGCGCCAGCGACAGCCTCAACTGGTATGC
GCAGTGGTGGCCGATTTGTTTTACTCCCGTCACAGATAAGTTCAAGCCTC
AGCCATTCGAGCTGCTCTCCATACCTATTGTAATCTGGTGAGACCCCTGG
CCGCGAGCTGGAACGTTGTGGAGGATACATGCCCTCATCGCTCGGCGCCA
CTGAGCGAAGGCCGCATCGACCGTCCAATGGATGCCTCGAGTGCCCTTAT
CATGGATGGACATTTGAGGGCAAGAAAGGAGCATGCACGCGGATCCCGCA
GCTAGAGGATGGCGTCCCTGCTCCGGAAAGTCGGGCAGCGGCAAGGATCG
CTGCGTACCCTACCACAGTCGCGCAAGGGATCATTTGGGTGTGGGCTTAA
TCGATCCAGTCCTTGGATGGCTACATGCCCGACACAAGCTTGGTTCCCCT
TTGTCCGCCCCTGACCGAAGATCCTGATTCAGTATGTCTTGATGTGAGCC
GCCACGTACCCTACTCGTACGAGAACGTGAAGGAGAACTTGCTGGATCCG
AGCCATGTCCCTTTTACTCACCACGCCACAATTGGAAGGCGGTCCTACGC
GGGTCCTATGCCTTTGAAACTGACAAGTGAGGTGTCTATGCAAGGCATTA
AGGGCGCATGGGAACACAATATTCCAGCCTCGCCCATGACGAAAAAACAC
CTGGGGCGTGTCAGGCGCGAAACGGTATTCAATGCCCCATCCTATATGCA
CCACCTCATTTCCACGCCCGAGCTGTCGACCTGGACGGTAACGTACGCCA
CTCCCTCGCGTCCAGGCAAGAGTCGCATTTTGGCCGGAATCCCATTCAAA
ATTCCTGAGGGCTCAAACAGCACAGACTCCGCGCCTCCTACAAAGAAGTC
CTCCCTTATGTCCCGTCTAAGGGGTGCCCTGTTCTTGCGGATCCCGCACT
GGCTGCAGCATTTGCAACAGAATCGCGTACTCGATGACGACAACATTTTC
TTGGCCGTGCAAGAACGGTGATTGGTTACGCGGCAGGGGGATTCAACGGC
GTCCTGGGCCAAGCGCTATTACCGACCGACCAAAGCCGATTTGTTTGTGG
CTCAATTTCGGAAATGGATACAAACATTTGGGGGAGGCGGTCCTTTTGGG
CCTCTCACTAAAGAGGACTTAGAAGAGCTTGACTGGAAGACTTTGTCAGA
TGTATTGCTGAATCGTTACGAACAGCACACCCGACATTGCTCTTCCTGTA
GCCGCGCACTTGCGACTGCAGCGCTGGAAGCCACGCGTCTTTGGGGCAGG
GCTATTTATTGGCACCGTGGGCAAGGGCTTGCTAGATCTCGTTATGGTCC
CAACCAAATCGTTGGTGCTTGTGACTTTGTCAGCCATGCTCTTGACTTTG
ATCTGGAAGCAGATGTGTGGCTTGGAAGAGGCCTTGCTGCGAGGGCCCTA
TCCTGCTCCACGCAATGTCGAATAGAAAAAGGCTTAAAGGTAATGTATAT
TTTAAAGGCGCACACATGAAGGGAAGAACACTGATGCCTGCTCTGATGCA
TGCGCGCTTGAGGTAGCGTTTTCGCAATTATGTTTTTTGCCAATCTGTGG
TTGCCCCCAGAAATGCATGTGCAATTCCATTACCAGTGGTAGTAACATGC
TTTCACAACATCACAGTGTAATGTTCGGGCTTGCATCATACCTGTAAACA
ATCACACTTGCACAATCATAACTGTAAACAATCTACGATCGTACAAATAA
TCCAAATGAGGCAAATTAGCAACCAAGAACGAA

protein sequence of jgi.p|Nanoce1779_2|591017

>mRNA_4985-protein ID=mRNA_4985-protein|Name=jgi.p|Nanoce1779_2|591017|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MPDTSLVPLCPPLTEDPDSVCLDVSRHVPYSYENVKENLLDPSHVPFTHH
ATIGRRSYAGPMPLKLTSEVSMQGIKGAWEHNIPASPMTKKHLGRVRRET
VFNAPSYMHHLISTPELSTWTVTYATPSRPGKSRILAGIPFKIPEGSNST
DSAPPTKKSSLMSRLRGALFLRIPHWLQHLQQNRVLDDDNIFLAVQER*

mRNA from alignment at scaffold_12:182515..184747+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4985 ID=mRNA_4985|Name=jgi.p|Nanoce1779_2|591017|organism=Nannochloropsis oceanica|type=mRNA|length=2233bp|location=Sequence derived from alignment at scaffold_12:182515..184747+ (Nannochloropsis oceanica)
GTGTCACCGCGCAGAGACATCGTCCTCATTTATCTCCTTCTTCGGCGTAG
CTGCTAGAGGTCAAGAGGGATGTGTTGTATATATGATCAGGCCTGGGGCG
ATGGCGAAGCTAAACGTTGCGGCGGCACAGTGTCGTCATTTTCATTAACT
TCATTTTGCCCACCTCTAACCTACGACCCAGGTCATACCAAGCCATTACT
GCAGCAGTACCGGGATGTCTTTGACCTTGGTTTTACTTAACCGGCTATGG
TGTCTTTCCACCCCATATTTGGCGAGGGGTTTTGGCTACCACTTTCGCGC
TTATCAACCTCCTCCATCCCACGACTTGCCTTTCAACGAGGATGCCTGGT
AGGCCAGGAGCCACCGACAATCTTTAACCTTCCCTTCGCCTACTCTCGCT
TGCAAGAGGGCTCGACGTGTCTAGCTGCCGCGACCACAGAGCTTACCACG
ACCGCGGAACCCCTGCCACCGAGCGCCAGCGACAGCCTCAACTGGTATGC
GCAGTGGTGGCCGATTTGTTTTACTCCCGTCACAGATAAGTTCAAGCCTC
AGCCATTCGAGCTGCTCTCCATACCTATTGTAATCTGGTGAGACCCCTGG
CCGCGAGCTGGAACGTTGTGGAGGATACATGCCCTCATCGCTCGGCGCCA
CTGAGCGAAGGCCGCATCGACCGTCCAATGGATGCCTCGAGTGCCCTTAT
CATGGATGGACATTTGAGGGCAAGAAAGGAGCATGCACGCGGATCCCGCA
GCTAGAGGATGGCGTCCCTGCTCCGGAAAGTCGGGCAGCGGCAAGGATCG
CTGCGTACCCTACCACAGTCGCGCAAGGGATCATTTGGGTGTGGGCTTAA
TCGATCCAGTCCTTGGATGGCTACATGCCCGACACAAGCTTGGTTCCCCT
TTGTCCGCCCCTGACCGAAGATCCTGATTCAGTATGTCTTGATGTGAGCC
GCCACGTACCCTACTCGTACGAGAACGTGAAGGAGAACTTGCTGGATCCG
AGCCATGTCCCTTTTACTCACCACGCCACAATTGGAAGGCGGTCCTACGC
GGGTCCTATGCCTTTGAAACTGACAAGTGAGGTGTCTATGCAAGGCATTA
AGGGCGCATGGGAACACAATATTCCAGCCTCGCCCATGACGAAAAAACAC
CTGGGGCGTGTCAGGCGCGAAACGGTATTCAATGCCCCATCCTATATGCA
CCACCTCATTTCCACGCCCGAGCTGTCGACCTGGACGGTAACGTACGCCA
CTCCCTCGCGTCCAGGCAAGAGTCGCATTTTGGCCGGAATCCCATTCAAA
ATTCCTGAGGGCTCAAACAGCACAGACTCCGCGCCTCCTACAAAGAAGTC
CTCCCTTATGTCCCGTCTAAGGGGTGCCCTGTTCTTGCGGATCCCGCACT
GGCTGCAGCATTTGCAACAGAATCGCGTACTCGATGACGACAACATTTTC
TTGGCCGTGCAAGAACGGTGATTGGTTACGCGGCAGGGGGATTCAACGGC
GTCCTGGGCCAAGCGCTATTACCGACCGACCAAAGCCGATTTGTTTGTGG
CTCAATTTCGGAAATGGATACAAACATTTGGGGGAGGCGGTCCTTTTGGG
CCTCTCACTAAAGAGGACTTAGAAGAGCTTGACTGGAAGACTTTGTCAGA
TGTATTGCTGAATCGTTACGAACAGCACACCCGACATTGCTCTTCCTGTA
GCCGCGCACTTGCGACTGCAGCGCTGGAAGCCACGCGTCTTTGGGGCAGG
GCTATTTATTGGCACCGTGGGCAAGGGCTTGCTAGATCTCGTTATGGTCC
CAACCAAATCGTTGGTGCTTGTGACTTTGTCAGCCATGCTCTTGACTTTG
ATCTGGAAGCAGATGTGTGGCTTGGAAGAGGCCTTGCTGCGAGGGCCCTA
TCCTGCTCCACGCAATGTCGAATAGAAAAAGGCTTAAAGGTAATGTATAT
TTTAAAGGCGCACACATGAAGGGAAGAACACTGATGCCTGCTCTGATGCA
TGCGCGCTTGAGGTAGCGTTTTCGCAATTATGTTTTTTGCCAATCTGTGG
TTGCCCCCAGAAATGCATGTGCAATTCCATTACCAGTGGTAGTAACATGC
TTTCACAACATCACAGTGTAATGTTCGGGCTTGCATCATACCTGTAAACA
ATCACACTTGCACAATCATAACTGTAAACAATCTACGATCGTACAAATAA
TCCAAATGAGGCAAATTAGCAACCAAGAACGAA

Coding sequence (CDS) from alignment at scaffold_12:182515..184747+

>mRNA_4985 ID=mRNA_4985|Name=jgi.p|Nanoce1779_2|591017|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_12:182515..184747+ (Nannochloropsis oceanica)
ATGCCCGACACAAGCTTGGTTCCCCTTTGTCCGCCCCTGACCGAAGATCC
TGATTCAGTATGTCTTGATGTGAGCCGCCACGTACCCTACTCGTACGAGA
ACGTGAAGGAGAACTTGCTGGATCCGAGCCATGTCCCTTTTACTCACCAC
GCCACAATTGGAAGGCGGTCCTACGCGGGTCCTATGCCTTTGAAACTGAC
AAGTGAGGTGTCTATGCAAGGCATTAAGGGCGCATGGGAACACAATATTC
CAGCCTCGCCCATGACGAAAAAACACCTGGGGCGTGTCAGGCGCGAAACG
GTATTCAATGCCCCATCCTATATGCACCACCTCATTTCCACGCCCGAGCT
GTCGACCTGGACGGTAACGTACGCCACTCCCTCGCGTCCAGGCAAGAGTC
GCATTTTGGCCGGAATCCCATTCAAAATTCCTGAGGGCTCAAACAGCACA
GACTCCGCGCCTCCTACAAAGAAGTCCTCCCTTATGTCCCGTCTAAGGGG
TGCCCTGTTCTTGCGGATCCCGCACTGGCTGCAGCATTTGCAACAGAATC
GCGTACTCGATGACGACAACATTTTCTTGGCCGTGCAAGAACGGTGA

Synonyms

Publications