jgi.p|Nanoce1779_2|528733, mRNA_4984 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528733
Unique NamemRNA_4984
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length222
Alignment locationscaffold_12:183143..183364 +

Link to JBrowse

Properties
Property NameValue
TranscriptId528819
TrackFilteredModels2
ProteinId528733
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:183143..183364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528733gene_4984Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528733mRNA_4984-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4984CDS_4984Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4984 ID=mRNA_4984|Name=jgi.p|Nanoce1779_2|528733|organism=Nannochloropsis oceanica|type=mRNA|length=222bp
ATGCCCTCATCGCTCGGCGCCACTGAGCGAAGGCCGCATCGACCGTCCAA
TGGATGCCTCGAGTGCCCTTATCATGGATGGACATTTGAGGGCAAGAAAG
GAGCATGCACGCGGATCCCGCAGCTAGAGGATGGCGTCCCTGCTCCGGAA
AGTCGGGCAGCGGCAAGGATCGCTGCGTACCCTACCACAGTCGCGCAAGG
GATCATTTGGGTGTGGGCTTAA
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protein sequence of jgi.p|Nanoce1779_2|528733

>mRNA_4984-protein ID=mRNA_4984-protein|Name=jgi.p|Nanoce1779_2|528733|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MPSSLGATERRPHRPSNGCLECPYHGWTFEGKKGACTRIPQLEDGVPAPE
SRAAARIAAYPTTVAQGIIWVWA*
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mRNA from alignment at scaffold_12:183143..183364+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4984 ID=mRNA_4984|Name=jgi.p|Nanoce1779_2|528733|organism=Nannochloropsis oceanica|type=mRNA|length=222bp|location=Sequence derived from alignment at scaffold_12:183143..183364+ (Nannochloropsis oceanica)
ATGCCCTCATCGCTCGGCGCCACTGAGCGAAGGCCGCATCGACCGTCCAA
TGGATGCCTCGAGTGCCCTTATCATGGATGGACATTTGAGGGCAAGAAAG
GAGCATGCACGCGGATCCCGCAGCTAGAGGATGGCGTCCCTGCTCCGGAA
AGTCGGGCAGCGGCAAGGATCGCTGCGTACCCTACCACAGTCGCGCAAGG
GATCATTTGGGTGTGGGCTTAA
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Coding sequence (CDS) from alignment at scaffold_12:183143..183364+

>mRNA_4984 ID=mRNA_4984|Name=jgi.p|Nanoce1779_2|528733|organism=Nannochloropsis oceanica|type=CDS|length=222bp|location=Sequence derived from alignment at scaffold_12:183143..183364+ (Nannochloropsis oceanica)
ATGCCCTCATCGCTCGGCGCCACTGAGCGAAGGCCGCATCGACCGTCCAA
TGGATGCCTCGAGTGCCCTTATCATGGATGGACATTTGAGGGCAAGAAAG
GAGCATGCACGCGGATCCCGCAGCTAGAGGATGGCGTCCCTGCTCCGGAA
AGTCGGGCAGCGGCAAGGATCGCTGCGTACCCTACCACAGTCGCGCAAGG
GATCATTTGGGTGTGGGCTTAA
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Synonyms
Publications