jgi.p|Nanoce1779_2|50093, mRNA_4982 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|50093
Unique NamemRNA_4982
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length638
Alignment locationscaffold_12:178409..179046 -

Link to JBrowse

Properties
Property NameValue
TranscriptId50179
TrackFilteredModels2
ProteinId50093
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:178409..179046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|50093gene_4982Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|50093mRNA_4982-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4982CDS_4982Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4982 ID=mRNA_4982|Name=jgi.p|Nanoce1779_2|50093|organism=Nannochloropsis oceanica|type=mRNA|length=638bp
AGGTGCACGGATTTGCGCTGGGGGCAGCTGGTGATTTCTTTGACGCGTTT
GATTGACATGTGAGGTGGGGGGGAAGGCTTCTTCGACACGAGCATTCTCT
CACTTTTCTGATTCCAACCATGTAAGACACATGTCTCACATCCTCTTACT
TCTTATGAAAACCCTTAAAAAGTGTAAAATCCTGGTTTGCGTCATGAGGC
CTCCGAGGCATCGGTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCACTTCCCTTGC
ATGGAGTTCGCAATGGCCCACTGCGTCCCTCGCTGTTACATCTGTCCACA
CCCCTATACTCTACACACACAAACCTACACATATCACGCAATACAGGAAT
CCTTTAAAATATAAGCGACAACCATGGATCGTGTGCGCCCAATGTGCCAG
GTGCCGGACTGCAACAGCCAGCCGTAGCCAGCAGCCAAAAAATGAGCAAG
GCAGGGCGATGTGTCAAGCATGGAGGTGGGAATCGATGCGAAATAAAGGG
CTGCAATAACATGTCGCTGACTGGCGACCGGGCACCGGACAAGGTTTGGA
CATGCGCTTGACACGGAGGGGCCAACCGGTGTGAGGCA
back to top

protein sequence of jgi.p|Nanoce1779_2|50093

>mRNA_4982-protein ID=mRNA_4982-protein|Name=jgi.p|Nanoce1779_2|50093|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MSHILLLLMKTLKKCKILVCVMRPPRHRSLLLLLLLLLLLLLLLLLLLLL
LLLTSLAWSSQWPTASLAVTSVHTPILYTHKPTHITQYRNPLKYKRQPWI
VCAQCARCRTATASRSQQPKNEQGRAMCQAWRWESMRNKGLQ*
back to top

mRNA from alignment at scaffold_12:178409..179046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4982 ID=mRNA_4982|Name=jgi.p|Nanoce1779_2|50093|organism=Nannochloropsis oceanica|type=mRNA|length=638bp|location=Sequence derived from alignment at scaffold_12:178409..179046- (Nannochloropsis oceanica)
AGGTGCACGGATTTGCGCTGGGGGCAGCTGGTGATTTCTTTGACGCGTTT GATTGACATGTGAGGTGGGGGGGAAGGCTTCTTCGACACGAGCATTCTCT CACTTTTCTGATTCCAACCATGTAAGACACATGTCTCACATCCTCTTACT TCTTATGAAAACCCTTAAAAAGTGTAAAATCCTGGTTTGCGTCATGAGGC CTCCGAGGCATCGGTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCACTTCCCTTGC ATGGAGTTCGCAATGGCCCACTGCGTCCCTCGCTGTTACATCTGTCCACA CCCCTATACTCTACACACACAAACCTACACATATCACGCAATACAGGAAT CCTTTAAAATATAAGCGACAACCATGGATCGTGTGCGCCCAATGTGCCAG GTGCCGGACTGCAACAGCCAGCCGTAGCCAGCAGCCAAAAAATGAGCAAG GCAGGGCGATGTGTCAAGCATGGAGGTGGGAATCGATGCGAAATAAAGGG CTGCAATAACATGTCGCTGACTGGCGACCGGGCACCGGACAAGGTTTGGA CATGCGCTTGACACGGAGGGGCCAACCGGTGTGAGGCA
back to top

Coding sequence (CDS) from alignment at scaffold_12:178409..179046-

>mRNA_4982 ID=mRNA_4982|Name=jgi.p|Nanoce1779_2|50093|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_12:178409..179046- (Nannochloropsis oceanica)
ATGTCTCACATCCTCTTACTTCTTATGAAAACCCTTAAAAAGTGTAAAAT
CCTGGTTTGCGTCATGAGGCCTCCGAGGCATCGGTCTCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCACTTCCCTTGCATGGAGTTCGCAATGGCCCACTGCGTCCCT
CGCTGTTACATCTGTCCACACCCCTATACTCTACACACACAAACCTACAC
ATATCACGCAATACAGGAATCCTTTAAAATATAAGCGACAACCATGGATC
GTGTGCGCCCAATGTGCCAGGTGCCGGACTGCAACAGCCAGCCGTAGCCA
GCAGCCAAAAAATGAGCAAGGCAGGGCGATGTGTCAAGCATGGAGGTGGG
AATCGATGCGAAATAAAGGGCTGCAATAA
back to top
Synonyms
Publications