jgi.p|Nanoce1779_2|566260, mRNA_4979 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566260
Unique NamemRNA_4979
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length408
Alignment locationscaffold_12:172743..173353 -

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Properties
Property NameValue
TranscriptId566346
TrackFilteredModels2
ProteinId566260
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:172743..173353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566260gene_4979Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566260mRNA_4979-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4979CDS_4979Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4979 ID=mRNA_4979|Name=jgi.p|Nanoce1779_2|566260|organism=Nannochloropsis oceanica|type=mRNA|length=408bp
ATGCGGCCGGCCTCAATCATCTTACAATTTGGTCATCTCGTGTCTGTTAG
TCCCTCTCCTGAACTCACCACAACACAGGGGATGGATTGGGAGAACACTC
TGCTTGCGGGGATCCAGAATCAGGCAATGCCAACGCCCGCCCTATGCTTG
CTGCCGAGGCATTCCGGCACGGCATTTTTCATTGATGACTACGGCGACGT
AATGATCTCTTCGATGTCCACCCCACTGCGTCGTGTTTCCTCTGGATGCG
CCCTTGAGAGGCCAGCTAAGGGGACCGGCGCGGAGTACATGAGAATCCCA
GGGATTCATTTCCAAAATGTGCTTACTTCTCGACACCACCCGTACACGAG
CGATCACTGCCTCGCACCCTCACTTCTCTTAACTCCACCCTCACACGATT
TTACATAA
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protein sequence of jgi.p|Nanoce1779_2|566260

>mRNA_4979-protein ID=mRNA_4979-protein|Name=jgi.p|Nanoce1779_2|566260|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MRPASIILQFGHLVSVSPSPELTTTQGMDWENTLLAGIQNQAMPTPALCL
LPRHSGTAFFIDDYGDVMISSMSTPLRRVSSGCALERPAKGTGAEYMRIP
GIHFQNVLTSRHHPYTSDHCLAPSLLLTPPSHDFT*
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mRNA from alignment at scaffold_12:172743..173353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4979 ID=mRNA_4979|Name=jgi.p|Nanoce1779_2|566260|organism=Nannochloropsis oceanica|type=mRNA|length=611bp|location=Sequence derived from alignment at scaffold_12:172743..173353- (Nannochloropsis oceanica)
ATGCGGCCGGCCTCAATCATCTTACAATTTGGTCATCTCGTGTCTGTTAG
TCCCTCTCCTGAACTCACCACAACACAGGTGAGCTAGAACAACAAAGCAT
AACGAATCTGCAGTCCGCTTCTTCTCCTGCGATGACCGGTCCTCGCGTGC
TCAGGCACAGCATTGCGACATCCTAACAAACGATGACGACCTCTGACTGT
AACAAATCGAAGGCATCATGGACTTGCAAGGCTTGTGAAAGGCTTGTCCA
ACTGACAGGGTTCTCCTCGCTTTCGGCACAGGGGATGGATTGGGAGAACA
CTCTGCTTGCGGGGATCCAGAATCAGGCAATGCCAACGCCCGCCCTATGC
TTGCTGCCGAGGCATTCCGGCACGGCATTTTTCATTGATGACTACGGCGA
CGTAATGATCTCTTCGATGTCCACCCCACTGCGTCGTGTTTCCTCTGGAT
GCGCCCTTGAGAGGCCAGCTAAGGGGACCGGCGCGGAGTACATGAGAATC
CCAGGGATTCATTTCCAAAATGTGCTTACTTCTCGACACCACCCGTACAC
GAGCGATCACTGCCTCGCACCCTCACTTCTCTTAACTCCACCCTCACACG
ATTTTACATAA
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Coding sequence (CDS) from alignment at scaffold_12:172743..173353-

>mRNA_4979 ID=mRNA_4979|Name=jgi.p|Nanoce1779_2|566260|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_12:172743..173353- (Nannochloropsis oceanica)
GGGATGGATTGGGAGAACACTCTGCTTGCGGGGATCCAGAATCAGGCAAT
GCCAACGCCCGCCCTATGCTTGCTGCCGAGGCATTCCGGCACGGCATTTT
TCATTGATGACTACGGCGACGTAATGATCTCTTCGATGTCCACCCCACTG
CGTCGTGTTTCCTCTGGATGCGCCCTTGAGAGGCCAGCTAAGGGGACCGG
CGCGGAGTACATGAGAATCCCAGGGATTCATTTCCAAAATGTGCTTACTT
CTCGACACCACCCGTACACGAGCGATCACTGCCTCGCACCCTCACTTCTC
TTAACTCCACCCTCACACGATTTTACATAAATGCGGCCGGCCTCAATCAT
CTTACAATTTGGTCATCTCGTGTCTGTTAGTCCCTCTCCTGAACTCACCA
CAACACAGGGGATGGATTGGGAGAACACTCTGCTTGCGGGGATCCAGAAT
CAGGCAATGCCAACGCCCGCCCTATGCTTGCTGCCGAGGCATTCCGGCAC
GGCATTTTTCATTGATGACTACGGCGACGTAATGATCTCTTCGATGTCCA
CCCCACTGCGTCGTGTTTCCTCTGGATGCGCCCTTGAGAGGCCAGCTAAG
GGGACCGGCGCGGAGTACATGAGAATCCCAGGGATTCATTTCCAAAATGT
GCTTACTTCTCGACACCACCCGTACACGAGCGATCACTGCCTCGCACCCT
CACTTCTCTTAACTCCACCCTCACACGATTTTACATAAATGCGGCCGGCC
TCAATCATCTTACAATTTGGTCATCTCGTGTCTGTTAGTCCCTCTCCTGA
ACTCACCACAACACAG
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Synonyms
Publications