jgi.p|Nanoce1779_2|590998, mRNA_4977 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590998
Unique NamemRNA_4977
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1182
Alignment locationscaffold_12:167988..169169 +

Link to JBrowse

Properties
Property NameValue
TranscriptId591084
TrackFilteredModels2
ProteinId590998
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:167988..169169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590998gene_4977Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590998mRNA_4977-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4977CDS_4977Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4977 ID=mRNA_4977|Name=jgi.p|Nanoce1779_2|590998|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp
GTGAAGTCTTGTTGGCGATACATGATCTCCAACAATTATCACAATGCGCA
TGCGATCATATACATCGACAGGCTCGCTGGGCATATCAAGGGCGACGTCT
TGCGTACCCGGCCAGTCCGCGGCGTGACGTGTAGCCATATATAATAAATG
GTAATCGGGAGACGGGGGACCACCTGCTGGCTGGGTAGGAGGCTAAACGC
GTGACGACTCCGGCCTCGGTGACAACAACGGGCACCATGAAGGTTTACGA
CAATGCTGAACAACAGGTGCAGCGTCTGCGGAAGGAGCTCGAGGCTGTGG
ACTTAGAGCGGGCTCTGGTGCGTCGGCGGCGAGCTCAAGTTGAAGGGAGA
CGGCGCCGGCTCCAGCGGCTGCAATCGCGATGGTGGGTCAGCAACAACGC
CGCGGAGCGAATGGTGATTCACTTGGTGGGAAACCAGAACGCTACACTGC
AAGATGTGGCGCGTGCCAAGGCCCGGCTGAAGGTACTGGCGCAGTTGAAT
GCAGCAAATGATTGTTTCTATATTTGGCATGCGGGGCCCTTTGCAACCAT
TAATGGATGCCGCCTGGGCCGCCTACCTTCCTTCATGACGGTCGAGTGGG
TAGATATCAATGCAGGCCTGGGCCAATCAATGCTTCTGCTTGACACATTG
GTGCGACGAGCGGGCTTTAGATTCCGGGACCACCAGCTGATGCCCTTGGG
TTCATTCTCCAAAATTATTAAACTGCCCAGGGGACGAGAGGAGGCGGGTT
TGGTACCCAGCAGTCCCCGCGCCAGCGGCGGTAACGCGTTGAATCTGTAC
TATGACGAGGCCAATCTGGTTTTCTTCCCCCGCCGAAATCTGAACGCGGC
ACTGGTCGCGTTTCTGCGGTGCGTAGAGGAGTTTGGGACATATGTCGAGC
AGCAGGACCCGACTCTTCGCCTGCCACATCGCATCCAAGACGGCGGGAAA
GTGGGCGGGCTGTCCATAAGTCTTATTCAGGGGGAAGAAGAAACGTGGAC
GCGAGCGCTAAAATATCTGCTGACGGATCTCAAGTGGCTGTTGGCCTGGA
GTGCAAAACGCGTGGCGACTTGATGGACTGAAATAGCGGGGGAGACCTTC
TGAACGAATGAAATAGTCTGTGGACACGAGATAAAATTGGAGGAGACAAA
CATTAAAATCAAACGCTATACATCAATGCCCG
back to top

protein sequence of jgi.p|Nanoce1779_2|590998

>mRNA_4977-protein ID=mRNA_4977-protein|Name=jgi.p|Nanoce1779_2|590998|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MKVYDNAEQQVQRLRKELEAVDLERALVRRRRAQVEGRRRRLQRLQSRWW
VSNNAAERMVIHLVGNQNATLQDVARAKARLKVLAQLNAANDCFYIWHAG
PFATINGCRLGRLPSFMTVEWVDINAGLGQSMLLLDTLVRRAGFRFRDHQ
LMPLGSFSKIIKLPRGREEAGLVPSSPRASGGNALNLYYDEANLVFFPRR
NLNAALVAFLRCVEEFGTYVEQQDPTLRLPHRIQDGGKVGGLSISLIQGE
EETWTRALKYLLTDLKWLLAWSAKRVAT*
back to top

mRNA from alignment at scaffold_12:167988..169169+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4977 ID=mRNA_4977|Name=jgi.p|Nanoce1779_2|590998|organism=Nannochloropsis oceanica|type=mRNA|length=1182bp|location=Sequence derived from alignment at scaffold_12:167988..169169+ (Nannochloropsis oceanica)
GTGAAGTCTTGTTGGCGATACATGATCTCCAACAATTATCACAATGCGCA
TGCGATCATATACATCGACAGGCTCGCTGGGCATATCAAGGGCGACGTCT
TGCGTACCCGGCCAGTCCGCGGCGTGACGTGTAGCCATATATAATAAATG
GTAATCGGGAGACGGGGGACCACCTGCTGGCTGGGTAGGAGGCTAAACGC
GTGACGACTCCGGCCTCGGTGACAACAACGGGCACCATGAAGGTTTACGA
CAATGCTGAACAACAGGTGCAGCGTCTGCGGAAGGAGCTCGAGGCTGTGG
ACTTAGAGCGGGCTCTGGTGCGTCGGCGGCGAGCTCAAGTTGAAGGGAGA
CGGCGCCGGCTCCAGCGGCTGCAATCGCGATGGTGGGTCAGCAACAACGC
CGCGGAGCGAATGGTGATTCACTTGGTGGGAAACCAGAACGCTACACTGC
AAGATGTGGCGCGTGCCAAGGCCCGGCTGAAGGTACTGGCGCAGTTGAAT
GCAGCAAATGATTGTTTCTATATTTGGCATGCGGGGCCCTTTGCAACCAT
TAATGGATGCCGCCTGGGCCGCCTACCTTCCTTCATGACGGTCGAGTGGG
TAGATATCAATGCAGGCCTGGGCCAATCAATGCTTCTGCTTGACACATTG
GTGCGACGAGCGGGCTTTAGATTCCGGGACCACCAGCTGATGCCCTTGGG
TTCATTCTCCAAAATTATTAAACTGCCCAGGGGACGAGAGGAGGCGGGTT
TGGTACCCAGCAGTCCCCGCGCCAGCGGCGGTAACGCGTTGAATCTGTAC
TATGACGAGGCCAATCTGGTTTTCTTCCCCCGCCGAAATCTGAACGCGGC
ACTGGTCGCGTTTCTGCGGTGCGTAGAGGAGTTTGGGACATATGTCGAGC
AGCAGGACCCGACTCTTCGCCTGCCACATCGCATCCAAGACGGCGGGAAA
GTGGGCGGGCTGTCCATAAGTCTTATTCAGGGGGAAGAAGAAACGTGGAC
GCGAGCGCTAAAATATCTGCTGACGGATCTCAAGTGGCTGTTGGCCTGGA
GTGCAAAACGCGTGGCGACTTGATGGACTGAAATAGCGGGGGAGACCTTC
TGAACGAATGAAATAGTCTGTGGACACGAGATAAAATTGGAGGAGACAAA
CATTAAAATCAAACGCTATACATCAATGCCCG
back to top

Coding sequence (CDS) from alignment at scaffold_12:167988..169169+

>mRNA_4977 ID=mRNA_4977|Name=jgi.p|Nanoce1779_2|590998|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at scaffold_12:167988..169169+ (Nannochloropsis oceanica)
ATGAAGGTTTACGACAATGCTGAACAACAGGTGCAGCGTCTGCGGAAGGA
GCTCGAGGCTGTGGACTTAGAGCGGGCTCTGGTGCGTCGGCGGCGAGCTC
AAGTTGAAGGGAGACGGCGCCGGCTCCAGCGGCTGCAATCGCGATGGTGG
GTCAGCAACAACGCCGCGGAGCGAATGGTGATTCACTTGGTGGGAAACCA
GAACGCTACACTGCAAGATGTGGCGCGTGCCAAGGCCCGGCTGAAGGTAC
TGGCGCAGTTGAATGCAGCAAATGATTGTTTCTATATTTGGCATGCGGGG
CCCTTTGCAACCATTAATGGATGCCGCCTGGGCCGCCTACCTTCCTTCAT
GACGGTCGAGTGGGTAGATATCAATGCAGGCCTGGGCCAATCAATGCTTC
TGCTTGACACATTGGTGCGACGAGCGGGCTTTAGATTCCGGGACCACCAG
CTGATGCCCTTGGGTTCATTCTCCAAAATTATTAAACTGCCCAGGGGACG
AGAGGAGGCGGGTTTGGTACCCAGCAGTCCCCGCGCCAGCGGCGGTAACG
CGTTGAATCTGTACTATGACGAGGCCAATCTGGTTTTCTTCCCCCGCCGA
AATCTGAACGCGGCACTGGTCGCGTTTCTGCGGTGCGTAGAGGAGTTTGG
GACATATGTCGAGCAGCAGGACCCGACTCTTCGCCTGCCACATCGCATCC
AAGACGGCGGGAAAGTGGGCGGGCTGTCCATAAGTCTTATTCAGGGGGAA
GAAGAAACGTGGACGCGAGCGCTAAAATATCTGCTGACGGATCTCAAGTG
GCTGTTGGCCTGGAGTGCAAAACGCGTGGCGACTTGA
back to top
Synonyms
Publications