Properties
| Property Name | Value |
|---|
| TranscriptId | 566343 |
| Track | FilteredModels2 |
| ProteinId | 566257 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:166514..167855 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4976 ID=mRNA_4976|Name=jgi.p|Nanoce1779_2|566257|organism=Nannochloropsis oceanica|type=mRNA|length=867bp
ATGAAGTCAAGCCTTCCCACCAGCCGCCCACCTCCAAAGGCGGATGCGGT
GGGCTGTGATAAACAGCGTGTGGCGGAAAGCCTTCTGATGTCCAGTTGCG
CAGGCCAGTTTCAGCACGTAGTGGATGACCTGCGTGAGATTCTCCCGCCC
AGCGTTCTGACCAAGACCTTCCTGCAAGCAGTGGCAAGGGCATATCACTC
TCAGCGGGGGGTGATTGTCACAGTGGCCGGTGCCAAGGTCTTGCTGCATA
AGCTGGGCGAGGTGGACGAAGGTTACCTCGACCCGAAAAACAAACAGATT
CTAATGGTGGATGCCCGGGCTGAGGTGGTCTCCACGGATAACGACAATGG
AAAGACGCTGATGACCGCTACTTCAGAGCCCGTGCGAGTGGAGCTGGAGC
AAGCAGTGGCACACTACGTCGCAGCAAACTATGCGACAGAAGCAGCTGCG
TGTGCCGTATACGCCCAGGAAGGGGCGCTGAGTGTGGTGATTTATGGGGA
ACGACTAAATTTCCGGAATTTCTGGTCGGGATCTTGGCTCTCCGTTTGGG
AGATCAAGGAGAAGGCGCTGTCAGGCACCATCGAGCTCTGCGCACATTAC
TTCGAGGGAGGCAACGTTCAGATGCGAGCCACCAAGACCGTGCCGACCAC
CCCTCTTCCTCCCACCATGGACGAGAGAACAGCTGCGGTTGCGGTAGTCG
ACGCCATTCAGCAAGCCGAGGAGACGATGCAGCGGGGCCTAGAGACAACT
TATTGTAAGTTGACTGACGAAGGTTACCGCAATTTGCGCATGAAACTACC
CGTAAGCAAACAAAGAATGGACTGGTCAGCCGGAGCTAAGAAGCTAGTGC
CCACCAAGATGTTATGA back to topprotein sequence of jgi.p|Nanoce1779_2|566257 >mRNA_4976-protein ID=mRNA_4976-protein|Name=jgi.p|Nanoce1779_2|566257|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MKSSLPTSRPPPKADAVGCDKQRVAESLLMSSCAGQFQHVVDDLREILPP
SVLTKTFLQAVARAYHSQRGVIVTVAGAKVLLHKLGEVDEGYLDPKNKQI
LMVDARAEVVSTDNDNGKTLMTATSEPVRVELEQAVAHYVAANYATEAAA
CAVYAQEGALSVVIYGERLNFRNFWSGSWLSVWEIKEKALSGTIELCAHY
FEGGNVQMRATKTVPTTPLPPTMDERTAAVAVVDAIQQAEETMQRGLETT
YCKLTDEGYRNLRMKLPVSKQRMDWSAGAKKLVPTKML* back to topmRNA from alignment at scaffold_12:166514..167855- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4976 ID=mRNA_4976|Name=jgi.p|Nanoce1779_2|566257|organism=Nannochloropsis oceanica|type=mRNA|length=1342bp|location=Sequence derived from alignment at scaffold_12:166514..167855- (Nannochloropsis oceanica)
ATGAAGTCAAGCCTTCCCACCAGCCGCCCACCTCCAAAGGCGGATGCGGT
GGGCTGTGATAAACAGCGTGTGGCGGAAAGCCTTCTGATGTCCAGTTGCG
CAGGCCAGTTTCAGCACGTAGTGGATGGTAAGGGTACATTTTCTGTGGGA
TGAGCCGTGCGGTTCCCCATTCCTCGCCCTAATTTTTCTCCCCCTCTCCA
ATTCAGACCTGCGTGAGATTCTCCCGCCCAGCGTTCTGACCAAGACCTTC
CTGCAAGCAGTGGCAAGGGCATATCACTCTCAGCGGGGGGTGATTGTCAC
AGTGGCCGGTGCCAAGGTCAGTTGGGTTGTTACGTGGAAATATGGAATGG
GGAAAAGCCTGTTTTCACCATCGCCTCTCTCTCTCTCTCTTCCTTTTCAG
GTCTTGCTGCATAAGCTGGGCGAGGTGGACGAAGGTTACCTCGACCCGAA
AAACAAACAGATTCTAATGGTGGATGCCCGGGCTGAGGTACGTCGAAGCG
ATTCAGGAACTCATCAATTGCCTCATCGCTTGCTCGCTGACCGTCGCTCC
CCTCTTCTCCTACCGAAGGTGGTCTCCACGGATAACGACAATGGAAAGAC
GCTGATGACCGCTACTTCAGAGCCCGTGCGAGTGGAGCTGGAGCAAGCAG
TGGCACACTACGTCGCAGCAAACTATGCGACAGAAGCAGTGAGTTGGATT
TCATAAGTGTAACTAGTTAGCATTTTAAAAAAAAAATACAATCCTTCTCA
AAACATAGGCTGCGTGTGCCGTATACGCCCAGGAAGGGGCGCTGAGTGTG
GTGATTTATGGGGAACGACTAAATTTCCGGAATTTCTGGTCGGGATCTTG
GCTCTCCGTTTGGGAGATCAAGGAGAAGGCGCTGTCAGGCACCATCGAGG
TACGCACAGATGACGTTTGTTTGCCTGCTTTACAAGACCAATCTGACACA
TATTTTGACATGGCCAGCTCTGCGCACATTACTTCGAGGGAGGCAACGTT
CAGATGCGAGCCACCAAGACCGTGCCGACCACCCCTCTTCCTCCCACCAT
GGACGAGAGAACAGCTGCGGTTGCGGTAGTCGACGCCATTCAGCAAGCCG
AGGAGACGATGCAGGTAACTGAGCCGAGTGTGGCTACGAGGTGTATGTTG
ACAAACTTATCAGCCTCTGATCGAAAGTCTCACACGTTATGTACATTTCA
TCCACAGCGGGGCCTAGAGACAACTTATTGTAAGTTGACTGACGAAGGTT
ACCGCAATTTGCGCATGAAACTACCCGTAAGCAAACAAAGAATGGACTGG
TCAGCCGGAGCTAAGAAGCTAGTGCCCACCAAGATGTTATGA back to topCoding sequence (CDS) from alignment at scaffold_12:166514..167855- >mRNA_4976 ID=mRNA_4976|Name=jgi.p|Nanoce1779_2|566257|organism=Nannochloropsis oceanica|type=CDS|length=6069bp|location=Sequence derived from alignment at scaffold_12:166514..167855- (Nannochloropsis oceanica)
CGGGGCCTAGAGACAACTTATTGTAAGTTGACTGACGAAGGTTACCGCAA
TTTGCGCATGAAACTACCCGTAAGCAAACAAAGAATGGACTGGTCAGCCG
GAGCTAAGAAGCTAGTGCCCACCAAGATGTTATGACTCTGCGCACATTAC
TTCGAGGGAGGCAACGTTCAGATGCGAGCCACCAAGACCGTGCCGACCAC
CCCTCTTCCTCCCACCATGGACGAGAGAACAGCTGCGGTTGCGGTAGTCG
ACGCCATTCAGCAAGCCGAGGAGACGATGCAGGCTGCGTGTGCCGTATAC
GCCCAGGAAGGGGCGCTGAGTGTGGTGATTTATGGGGAACGACTAAATTT
CCGGAATTTCTGGTCGGGATCTTGGCTCTCCGTTTGGGAGATCAAGGAGA
AGGCGCTGTCAGGCACCATCGAGGTGGTCTCCACGGATAACGACAATGGA
AAGACGCTGATGACCGCTACTTCAGAGCCCGTGCGAGTGGAGCTGGAGCA
AGCAGTGGCACACTACGTCGCAGCAAACTATGCGACAGAAGCAGTCTTGC
TGCATAAGCTGGGCGAGGTGGACGAAGGTTACCTCGACCCGAAAAACAAA
CAGATTCTAATGGTGGATGCCCGGGCTGAGACCTGCGTGAGATTCTCCCG
CCCAGCGTTCTGACCAAGACCTTCCTGCAAGCAGTGGCAAGGGCATATCA
CTCTCAGCGGGGGGTGATTGTCACAGTGGCCGGTGCCAAGATGAAGTCAA
GCCTTCCCACCAGCCGCCCACCTCCAAAGGCGGATGCGGTGGGCTGTGAT
AAACAGCGTGTGGCGGAAAGCCTTCTGATGTCCAGTTGCGCAGGCCAGTT
TCAGCACGTAGTGGATGCGGGGCCTAGAGACAACTTATTGTAAGTTGACT
GACGAAGGTTACCGCAATTTGCGCATGAAACTACCCGTAAGCAAACAAAG
AATGGACTGGTCAGCCGGAGCTAAGAAGCTAGTGCCCACCAAGATGTTAT
GACTCTGCGCACATTACTTCGAGGGAGGCAACGTTCAGATGCGAGCCACC
AAGACCGTGCCGACCACCCCTCTTCCTCCCACCATGGACGAGAGAACAGC
TGCGGTTGCGGTAGTCGACGCCATTCAGCAAGCCGAGGAGACGATGCAGG
CTGCGTGTGCCGTATACGCCCAGGAAGGGGCGCTGAGTGTGGTGATTTAT
GGGGAACGACTAAATTTCCGGAATTTCTGGTCGGGATCTTGGCTCTCCGT
TTGGGAGATCAAGGAGAAGGCGCTGTCAGGCACCATCGAGGTGGTCTCCA
CGGATAACGACAATGGAAAGACGCTGATGACCGCTACTTCAGAGCCCGTG
CGAGTGGAGCTGGAGCAAGCAGTGGCACACTACGTCGCAGCAAACTATGC
GACAGAAGCAGTCTTGCTGCATAAGCTGGGCGAGGTGGACGAAGGTTACC
TCGACCCGAAAAACAAACAGATTCTAATGGTGGATGCCCGGGCTGAGACC
TGCGTGAGATTCTCCCGCCCAGCGTTCTGACCAAGACCTTCCTGCAAGCA
GTGGCAAGGGCATATCACTCTCAGCGGGGGGTGATTGTCACAGTGGCCGG
TGCCAAGATGAAGTCAAGCCTTCCCACCAGCCGCCCACCTCCAAAGGCGG
ATGCGGTGGGCTGTGATAAACAGCGTGTGGCGGAAAGCCTTCTGATGTCC
AGTTGCGCAGGCCAGTTTCAGCACGTAGTGGATGCGGGGCCTAGAGACAA
CTTATTGTAAGTTGACTGACGAAGGTTACCGCAATTTGCGCATGAAACTA
CCCGTAAGCAAACAAAGAATGGACTGGTCAGCCGGAGCTAAGAAGCTAGT
GCCCACCAAGATGTTATGACTCTGCGCACATTACTTCGAGGGAGGCAACG
TTCAGATGCGAGCCACCAAGACCGTGCCGACCACCCCTCTTCCTCCCACC
ATGGACGAGAGAACAGCTGCGGTTGCGGTAGTCGACGCCATTCAGCAAGC
CGAGGAGACGATGCAGGCTGCGTGTGCCGTATACGCCCAGGAAGGGGCGC
TGAGTGTGGTGATTTATGGGGAACGACTAAATTTCCGGAATTTCTGGTCG
GGATCTTGGCTCTCCGTTTGGGAGATCAAGGAGAAGGCGCTGTCAGGCAC
CATCGAGGTGGTCTCCACGGATAACGACAATGGAAAGACGCTGATGACCG
CTACTTCAGAGCCCGTGCGAGTGGAGCTGGAGCAAGCAGTGGCACACTAC
GTCGCAGCAAACTATGCGACAGAAGCAGTCTTGCTGCATAAGCTGGGCGA
GGTGGACGAAGGTTACCTCGACCCGAAAAACAAACAGATTCTAATGGTGG
ATGCCCGGGCTGAGACCTGCGTGAGATTCTCCCGCCCAGCGTTCTGACCA
AGACCTTCCTGCAAGCAGTGGCAAGGGCATATCACTCTCAGCGGGGGGTG
ATTGTCACAGTGGCCGGTGCCAAGATGAAGTCAAGCCTTCCCACCAGCCG
CCCACCTCCAAAGGCGGATGCGGTGGGCTGTGATAAACAGCGTGTGGCGG
AAAGCCTTCTGATGTCCAGTTGCGCAGGCCAGTTTCAGCACGTAGTGGAT
GCGGGGCCTAGAGACAACTTATTGTAAGTTGACTGACGAAGGTTACCGCA
ATTTGCGCATGAAACTACCCGTAAGCAAACAAAGAATGGACTGGTCAGCC
GGAGCTAAGAAGCTAGTGCCCACCAAGATGTTATGACTCTGCGCACATTA
CTTCGAGGGAGGCAACGTTCAGATGCGAGCCACCAAGACCGTGCCGACCA
CCCCTCTTCCTCCCACCATGGACGAGAGAACAGCTGCGGTTGCGGTAGTC
GACGCCATTCAGCAAGCCGAGGAGACGATGCAGGCTGCGTGTGCCGTATA
CGCCCAGGAAGGGGCGCTGAGTGTGGTGATTTATGGGGAACGACTAAATT
TCCGGAATTTCTGGTCGGGATCTTGGCTCTCCGTTTGGGAGATCAAGGAG
AAGGCGCTGTCAGGCACCATCGAGGTGGTCTCCACGGATAACGACAATGG
AAAGACGCTGATGACCGCTACTTCAGAGCCCGTGCGAGTGGAGCTGGAGC
AAGCAGTGGCACACTACGTCGCAGCAAACTATGCGACAGAAGCAGTCTTG
CTGCATAAGCTGGGCGAGGTGGACGAAGGTTACCTCGACCCGAAAAACAA
ACAGATTCTAATGGTGGATGCCCGGGCTGAGACCTGCGTGAGATTCTCCC
GCCCAGCGTTCTGACCAAGACCTTCCTGCAAGCAGTGGCAAGGGCATATC
ACTCTCAGCGGGGGGTGATTGTCACAGTGGCCGGTGCCAAGATGAAGTCA
AGCCTTCCCACCAGCCGCCCACCTCCAAAGGCGGATGCGGTGGGCTGTGA
TAAACAGCGTGTGGCGGAAAGCCTTCTGATGTCCAGTTGCGCAGGCCAGT
TTCAGCACGTAGTGGATGCGGGGCCTAGAGACAACTTATTGTAAGTTGAC
TGACGAAGGTTACCGCAATTTGCGCATGAAACTACCCGTAAGCAAACAAA
GAATGGACTGGTCAGCCGGAGCTAAGAAGCTAGTGCCCACCAAGATGTTA
TGACTCTGCGCACATTACTTCGAGGGAGGCAACGTTCAGATGCGAGCCAC
CAAGACCGTGCCGACCACCCCTCTTCCTCCCACCATGGACGAGAGAACAG
CTGCGGTTGCGGTAGTCGACGCCATTCAGCAAGCCGAGGAGACGATGCAG
GCTGCGTGTGCCGTATACGCCCAGGAAGGGGCGCTGAGTGTGGTGATTTA
TGGGGAACGACTAAATTTCCGGAATTTCTGGTCGGGATCTTGGCTCTCCG
TTTGGGAGATCAAGGAGAAGGCGCTGTCAGGCACCATCGAGGTGGTCTCC
ACGGATAACGACAATGGAAAGACGCTGATGACCGCTACTTCAGAGCCCGT
GCGAGTGGAGCTGGAGCAAGCAGTGGCACACTACGTCGCAGCAAACTATG
CGACAGAAGCAGTCTTGCTGCATAAGCTGGGCGAGGTGGACGAAGGTTAC
CTCGACCCGAAAAACAAACAGATTCTAATGGTGGATGCCCGGGCTGAGAC
CTGCGTGAGATTCTCCCGCCCAGCGTTCTGACCAAGACCTTCCTGCAAGC
AGTGGCAAGGGCATATCACTCTCAGCGGGGGGTGATTGTCACAGTGGCCG
GTGCCAAGATGAAGTCAAGCCTTCCCACCAGCCGCCCACCTCCAAAGGCG
GATGCGGTGGGCTGTGATAAACAGCGTGTGGCGGAAAGCCTTCTGATGTC
CAGTTGCGCAGGCCAGTTTCAGCACGTAGTGGATGCGGGGCCTAGAGACA
ACTTATTGTAAGTTGACTGACGAAGGTTACCGCAATTTGCGCATGAAACT
ACCCGTAAGCAAACAAAGAATGGACTGGTCAGCCGGAGCTAAGAAGCTAG
TGCCCACCAAGATGTTATGACTCTGCGCACATTACTTCGAGGGAGGCAAC
GTTCAGATGCGAGCCACCAAGACCGTGCCGACCACCCCTCTTCCTCCCAC
CATGGACGAGAGAACAGCTGCGGTTGCGGTAGTCGACGCCATTCAGCAAG
CCGAGGAGACGATGCAGGCTGCGTGTGCCGTATACGCCCAGGAAGGGGCG
CTGAGTGTGGTGATTTATGGGGAACGACTAAATTTCCGGAATTTCTGGTC
GGGATCTTGGCTCTCCGTTTGGGAGATCAAGGAGAAGGCGCTGTCAGGCA
CCATCGAGGTGGTCTCCACGGATAACGACAATGGAAAGACGCTGATGACC
GCTACTTCAGAGCCCGTGCGAGTGGAGCTGGAGCAAGCAGTGGCACACTA
CGTCGCAGCAAACTATGCGACAGAAGCAGTCTTGCTGCATAAGCTGGGCG
AGGTGGACGAAGGTTACCTCGACCCGAAAAACAAACAGATTCTAATGGTG
GATGCCCGGGCTGAGACCTGCGTGAGATTCTCCCGCCCAGCGTTCTGACC
AAGACCTTCCTGCAAGCAGTGGCAAGGGCATATCACTCTCAGCGGGGGGT
GATTGTCACAGTGGCCGGTGCCAAGATGAAGTCAAGCCTTCCCACCAGCC
GCCCACCTCCAAAGGCGGATGCGGTGGGCTGTGATAAACAGCGTGTGGCG
GAAAGCCTTCTGATGTCCAGTTGCGCAGGCCAGTTTCAGCACGTAGTGGA
TGCGGGGCCTAGAGACAACTTATTGTAAGTTGACTGACGAAGGTTACCGC
AATTTGCGCATGAAACTACCCGTAAGCAAACAAAGAATGGACTGGTCAGC
CGGAGCTAAGAAGCTAGTGCCCACCAAGATGTTATGACTCTGCGCACATT
ACTTCGAGGGAGGCAACGTTCAGATGCGAGCCACCAAGACCGTGCCGACC
ACCCCTCTTCCTCCCACCATGGACGAGAGAACAGCTGCGGTTGCGGTAGT
CGACGCCATTCAGCAAGCCGAGGAGACGATGCAGGCTGCGTGTGCCGTAT
ACGCCCAGGAAGGGGCGCTGAGTGTGGTGATTTATGGGGAACGACTAAAT
TTCCGGAATTTCTGGTCGGGATCTTGGCTCTCCGTTTGGGAGATCAAGGA
GAAGGCGCTGTCAGGCACCATCGAGGTGGTCTCCACGGATAACGACAATG
GAAAGACGCTGATGACCGCTACTTCAGAGCCCGTGCGAGTGGAGCTGGAG
CAAGCAGTGGCACACTACGTCGCAGCAAACTATGCGACAGAAGCAGTCTT
GCTGCATAAGCTGGGCGAGGTGGACGAAGGTTACCTCGACCCGAAAAACA
AACAGATTCTAATGGTGGATGCCCGGGCTGAGACCTGCGTGAGATTCTCC
CGCCCAGCGTTCTGACCAAGACCTTCCTGCAAGCAGTGGCAAGGGCATAT
CACTCTCAGCGGGGGGTGATTGTCACAGTGGCCGGTGCCAAGATGAAGTC
AAGCCTTCCCACCAGCCGCCCACCTCCAAAGGCGGATGCGGTGGGCTGTG
ATAAACAGCGTGTGGCGGAAAGCCTTCTGATGTCCAGTTGCGCAGGCCAG
TTTCAGCACGTAGTGGATG back to top
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