jgi.p|Nanoce1779_2|49871, mRNA_4971 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|49871
Unique Name	mRNA_4971
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1726
Alignment location	scaffold_12:151237..153450 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	49957
Track	FilteredModels2
ProteinId	49871

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:151237..153450 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|49871	gene_4971	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|49871	mRNA_4971-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4971	CDS_4971	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:151237..153450+
coding sequence from alignment at scaffold_12:151237..153450+

mRNA sequence

>mRNA_4971 ID=mRNA_4971|Name=jgi.p|Nanoce1779_2|49871|organism=Nannochloropsis oceanica|type=mRNA|length=1726bp
TCGCCTCCTATTTCTTCTTCGTTCTCGACTCGTATGCCTGGCCTCCGCTC
AACCATCCGCTAGTCAGACTCGCGCATAGGGAATCAAATACGCCTCATAG
CACCAGCATTGATGCTTCGTAGCCAGGCGCATTTGACGACGGCGAGGAAC
GGGCAAACCAGGACATGTGGAGGAGAGAAAGCAGCATTCCAACAGAGATC
GAGGGGAGACGACGCTTGAGGACCATCGAGATGAGGAGGCATTGAGAGGA
AAGGATGATGATGAGAAGGGCGCGTTGGAATCCTGCGCATGTCAGTGTCG
TCACACCTTCGTCTTTCTCACCTTCATCCTACGCGCTACAGGCCAATACG
TCCCCCTGCACAACGCCGACGAGCAAGGACTGCCCTTGGTCTCTTCTTCA
AAGCAAACATATCATGGCGTCCACAATCATCGAGGCGAAGTGGGACGGCA
TCGAAGAGGAAGACGACTTTGAGGACGTTATCCCACGCCAACAAGGCGAA
CGGGAAATGGAAGATGCGGATAATAAACAGAATCAAGACCTGGCCGTCGC
CGGGCTGTTTTCCACCCATTTACCGCCACGAGCAGGGTGCGAATCAACGG
GCCCCATGGGAGACCGTGCCAAGCGCGAAGATTGCTGCGTCATTTGCCAC
CAAGAGGAATTTGATGCGCAGGTGAATGAAATAATTTATTGTGATAGATG
TGATTTGGGGTTCCATCAACAATGCTATGGTGTGCCAAAGGTCCCGGATG
GTGATTTCTTTTGTGAATTCTGCAGTGTTGCCAAGGAGGACAACGACGAC
GACGAATGGAACGAGAACGAGGAGGAGGAAGATGAAGACGACGATGTCAT
GAGTGAATGCGTGGATGCAGATGCTGCTGCTGCTGCATTGCGTGCGTCAC
CGCCATCTTTGTCTTGCCCATCGGCTTTGCCAGCCTTTGTGCACAAGGTC
TGTGCTTTGGCAGGCTGGAATCGACGGCCACGCCGGCTGGTGCGGTTCGT
GGCGGGTACGAACGCTCAAGTGGCCATTTTGTCACGTGTTTTGGTGGCAA
AGTATCGGTATGCCACGGCCAATGAAGATGCTGCCGCCGCCCAATGGCAG
TCAGTGGACATTGCCATGTGTGGTATCTGCTATTCTTCTGTTGGCTTGCT
TATTCGTTGTCGCCACCACGATCCTGAGAGTGAGTTTTTCAAGTGCTCGT
TCTATGCTCATGCCGCTTGTGCCTTCAATGCTGGTCAGGCCTCGCTCCTT
TTGCACGACGTTCGGCAATCCCCCTTAGTTCAGATATGGTGTGCCACGCA
CAAGCCTGGACCTTCTATCGAAAGGCCGGGGGGAGAGGCCGTCGCGCGGT
GCCTGGGTCTTCTCTTGCACCCTCCGCCCGCAGCCGTCGAGGAGCACCAG
CACCAGCAGTGGCAAGATCGGTCCCGGCGCCAGCCACTTTTGCAACACTT
GCTTTACGAGCGGAAGAGAGAAAGCTACGGGCGCTTGGGGGGTTATATGG
ACGACAAATATAGTTTGCTGCAGCAGCGGCTAGCATCGTCGCCTTCGGGG
GCTGAGGGGGCTCGCCTGATCCTTTGTTGGACGGATCGGGCAAAGGAGAT
TTATGCATGCCGGGAGCCTCATCCTGCCACGCCCATCGTCTGACGGCCGT
TATCGACGGAAAAGACGATATAAGAATAAGAAATGGAAAGAAATCAAGTG
TCCCAAAGAGACATGGGGTTTGAGGC

protein sequence of jgi.p|Nanoce1779_2|49871

>mRNA_4971-protein ID=mRNA_4971-protein|Name=jgi.p|Nanoce1779_2|49871|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MMMRRARWNPAHVSVVTPSSFSPSSYALQANTSPCTTPTSKDCPWSLLQS
KHIMASTIIEAKWDGIEEEDDFEDVIPRQQGEREMEDADNKQNQDLAVAG
LFSTHLPPRAGCESTGPMGDRAKREDCCVICHQEEFDAQVNEIIYCDRCD
LGFHQQCYGVPKVPDGDFFCEFCSVAKEDNDDDEWNENEEEEDEDDDVMS
ECVDADAAAAALRASPPSLSCPSALPAFVHKVCALAGWNRRPRRLVRFVA
GTNAQVAILSRVLVAKYRYATANEDAAAAQWQSVDIAMCGICYSSVGLLI
RCRHHDPESEFFKCSFYAHAACAFNAGQASLLLHDVRQSPLVQIWCATHK
PGPSIERPGGEAVARCLGLLLHPPPAAVEEHQHQQWQDRSRRQPLLQHLL
YERKRESYGRLGGYMDDKYSLLQQRLASSPSGAEGARLILCWTDRAKEIY
ACREPHPATPIV*

mRNA from alignment at scaffold_12:151237..153450+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4971 ID=mRNA_4971|Name=jgi.p|Nanoce1779_2|49871|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp|location=Sequence derived from alignment at scaffold_12:151237..153450+ (Nannochloropsis oceanica)
TCGCCTCCTATTTCTTCTTCGTTCTCGACTCGTATGCCTGGCCTCCGCTC
AACCATCCGCTAGTCAGACTCGCGCATAGGGAATCAAATACGCCTCATAG
CACCAGCATTGATGCTTCGTAGCCAGGCGCATTTGACGACGGCGAGGAAC
GGGCAAACCAGGACATGTGGAGGAGAGAAAGCAGCATTCCAACAGAGATC
GAGGGGAGACGACGCTTGAGGACCATCGAGATGAGGAGGCATTGAGAGGA
AAGGATGATGATGAGAAGGGCGCGTTGGAATCCTGCGCATGTCAGTGTCG
TCACACCTTCGTCTTTCTCACCTTCATCCTACGCGCTACAGGCCAATACG
TCCCCCTGCACAACGCCGACGAGCAAGGACTGCCCTTGGTCTCTTCTTCA
AAGCAAACATATCATGGCGTCCACAATGTAAGTGCTGCGGCTTATCAACC
TTCATGCCAAGAGATGTTAGGCCCCTCTTTTGTCCAATCCTCGGAATGAA
ATTCAGAAACCTGCGACTATAGTTGGAAAGCAAAAGCTGTTTCCCCCCAC
ATGTTACTCCCATACAGTCCGCATGGTCTGCAGGCCAGGGTCGTCATATA
CCCCCAACCAATGTTAGACAATTTTGCTTGCTGTTTTCTGTTGATCGATG
CATTTAACGTAAAAATAAGCTGGAGAGACACAGCCTATCCTTTACCAATT
GAAACGCCGCCTTTCCAAACCTCACCCCTTTGTGATCCTCATTTCTCACG
TTTCGAAATCGGGAACATTGAAAACTAATTACATAGCATCGAGGCGAAGT
GGGACGGCATCGAAGAGGAAGACGACTTTGAGGACGTTATCCCACGCCAA
CAAGGCGAACGGGAAATGGAAGATGCGGATAATAAACAGAATCAAGACCT
GGCCGTCGCCGGGCTGTTTTCCACCCATTTACCGCCACGAGCAGGGTGCG
AATCAACGGGCCCCATGGGAGACCGTGCCAAGCGCGAAGATTGCTGCGTC
ATTTGCCACCAAGAGGAATTTGATGCGCAGGTGAATGAAATAATTTATTG
TGATAGATGTGATTTGGGGTTCCATCAACAATGCTATGGTGTGCCAAAGG
TCCCGGATGGTGATTTCTTTTGTGAATTCTGCAGTGTTGCCAAGGAGGCT
TCCGACAGGAAGAAGAATGCACCCGCAGCTGTGTGTGAGCTCTGCCGTCA
ACGAGGTGGGGGACTTGTGAAGGCCTGGATTGTGGACCCCGATGTGGACG
AGAATCTGGAGGAGGAGGAGGAGGAGGACAACGACGACGACGAATGGAAC
GAGAACGAGGAGGAGGAAGATGAAGACGACGATGTCATGAGTGAATGCGT
GGATGCAGATGCTGCTGCTGCTGCATTGCGTGCGTCACCGCCATCTTTGT
CTTGCCCATCGGCTTTGCCAGCCTTTGTGCACAAGGTCTGTGCTTTGGCA
GGCTGGAATCGACGGCCACGCCGGCTGGTGCGGTTCGTGGCGGGTACGAA
CGCTCAAGTGGCCATTTTGTCACGTGTTTTGGTGGCAAAGTATCGGTATG
CCACGGCCAATGAAGATGCTGCCGCCGCCCAATGGCAGTCAGTGGACATT
GCCATGTGTGGTATCTGCTATTCTTCTGTTGGCTTGCTTATTCGTTGTCG
CCACCACGATCCTGAGAGTGAGTTTTTCAAGTGCTCGTTCTATGCTCATG
CCGCTTGTGCCTTCAATGCTGGTCAGGCCTCGCTCCTTTTGCACGACGTT
CGGCAATCCCCCTTAGTTCAGATATGGTGTGCCACGCACAAGCCTGGACC
TTCTATCGAAAGGCCGGGGGGAGAGGCCGTCGCGCGGTGCCTGGGTCTTC
TCTTGCACCCTCCGCCCGCAGCCGTCGAGGAGCACCAGCACCAGCAGTGG
CAAGATCGGTCCCGGCGCCAGCCACTTTTGCAACACTTGCTTTACGAGCG
GAAGAGAGAAAGCTACGGGCGCTTGGGGGGTTATATGGACGACAAATATA
GTTTGCTGCAGCAGCGGCTAGCATCGTCGCCTTCGGGGGCTGAGGGGGCT
CGCCTGATCCTTTGTTGGACGGATCGGGCAAAGGAGATTTATGCATGCCG
GGAGCCTCATCCTGCCACGCCCATCGTCTGACGGCCGTTATCGACGGAAA
AGACGATATAAGAATAAGAAATGGAAAGAAATCAAGTGTCCCAAAGAGAC
ATGGGGTTTGAGGC

Coding sequence (CDS) from alignment at scaffold_12:151237..153450+

>mRNA_4971 ID=mRNA_4971|Name=jgi.p|Nanoce1779_2|49871|organism=Nannochloropsis oceanica|type=CDS|length=4167bp|location=Sequence derived from alignment at scaffold_12:151237..153450+ (Nannochloropsis oceanica)
ATGATGATGAGAAGGGCGCGTTGGAATCCTGCGCATGTCAGTGTCGTCAC
ACCTTCGTCTTTCTCACCTTCATCCTACGCGCTACAGGCCAATACGTCCC
CCTGCACAACGCCGACGAGCAAGGACTGCCCTTGGTCTCTTCTTCAAAGC
AAACATATCATGGCGTCCACAATCATCGAGGCGAAGTGGGACGGCATCGA
AGAGGAAGACGACTTTGAGGACGTTATCCCACGCCAACAAGGCGAACGGG
AAATGGAAGATGCGGATAATAAACAGAATCAAGACCTGGCCGTCGCCGGG
CTGTTTTCCACCCATTTACCGCCACGAGCAGGGTGCGAATCAACGGGCCC
CATGGGAGACCGTGCCAAGCGCGAAGATTGCTGCGTCATTTGCCACCAAG
AGGAATTTGATGCGCAGGTGAATGAAATAATTTATTGTGATAGATGTGAT
TTGGGGTTCCATCAACAATGCTATGGTGTGCCAAAGGTCCCGGATGGTGA
TTTCTTTTGTGAATTCTGCAGTGTTGCCAAGGAGGACAACGACGACGACG
AATGGAACGAGAACGAGGAGGAGGAAGATGAAGACGACGATGTCATGAGT
GAATGCGTGGATGCAGATGCTGCTGCTGCTGCATTGCGTGCGTCACCGCC
ATCTTTGTCTTGCCCATCGGCTTTGCCAGCCTTTGTGCACAAGGTCTGTG
CTTTGGCAGGCTGGAATCGACGGCCACGCCGGCTGGTGCGGTTCGTGGCG
GGTACGAACGCTCAAGTGGCCATTTTGTCACGTGTTTTGGTGGCAAAGTA
TCGGTATGCCACGGCCAATGAAGATGCTGCCGCCGCCCAATGGCAGTCAG
TGGACATTGCCATGTGTGGTATCTGCTATTCTTCTGTTGGCTTGCTTATT
CGTTGTCGCCACCACGATCCTGAGAGTGAGTTTTTCAAGTGCTCGTTCTA
TGCTCATGCCGCTTGTGCCTTCAATGCTGGTCAGGCCTCGCTCCTTTTGC
ACGACGTTCGGCAATCCCCCTTAGTTCAGATATGGTGTGCCACGCACAAG
CCTGGACCTTCTATCGAAAGGCCGGGGGGAGAGGCCGTCGCGCGGTGCCT
GGGTCTTCTCTTGCACCCTCCGCCCGCAGCCGTCGAGGAGCACCAGCACC
AGCAGTGGCAAGATCGGTCCCGGCGCCAGCCACTTTTGCAACACTTGCTT
TACGAGCGGAAGAGAGAAAGCTACGGGCGCTTGGGGGGTTATATGGACGA
CAAATATAGTTTGCTGCAGCAGCGGCTAGCATCGTCGCCTTCGGGGGCTG
AGGGGGCTCGCCTGATCCTTTGTTGGACGGATCGGGCAAAGGAGATTTAT
GCATGCCGGGAGCCTCATCCTGCCACGCCCATCGTCTGAATGATGATGAG
AAGGGCGCGTTGGAATCCTGCGCATGTCAGTGTCGTCACACCTTCGTCTT
TCTCACCTTCATCCTACGCGCTACAGGCCAATACGTCCCCCTGCACAACG
CCGACGAGCAAGGACTGCCCTTGGTCTCTTCTTCAAAGCAAACATATCAT
GGCGTCCACAATCATCGAGGCGAAGTGGGACGGCATCGAAGAGGAAGACG
ACTTTGAGGACGTTATCCCACGCCAACAAGGCGAACGGGAAATGGAAGAT
GCGGATAATAAACAGAATCAAGACCTGGCCGTCGCCGGGCTGTTTTCCAC
CCATTTACCGCCACGAGCAGGGTGCGAATCAACGGGCCCCATGGGAGACC
GTGCCAAGCGCGAAGATTGCTGCGTCATTTGCCACCAAGAGGAATTTGAT
GCGCAGGTGAATGAAATAATTTATTGTGATAGATGTGATTTGGGGTTCCA
TCAACAATGCTATGGTGTGCCAAAGGTCCCGGATGGTGATTTCTTTTGTG
AATTCTGCAGTGTTGCCAAGGAGGACAACGACGACGACGAATGGAACGAG
AACGAGGAGGAGGAAGATGAAGACGACGATGTCATGAGTGAATGCGTGGA
TGCAGATGCTGCTGCTGCTGCATTGCGTGCGTCACCGCCATCTTTGTCTT
GCCCATCGGCTTTGCCAGCCTTTGTGCACAAGGTCTGTGCTTTGGCAGGC
TGGAATCGACGGCCACGCCGGCTGGTGCGGTTCGTGGCGGGTACGAACGC
TCAAGTGGCCATTTTGTCACGTGTTTTGGTGGCAAAGTATCGGTATGCCA
CGGCCAATGAAGATGCTGCCGCCGCCCAATGGCAGTCAGTGGACATTGCC
ATGTGTGGTATCTGCTATTCTTCTGTTGGCTTGCTTATTCGTTGTCGCCA
CCACGATCCTGAGAGTGAGTTTTTCAAGTGCTCGTTCTATGCTCATGCCG
CTTGTGCCTTCAATGCTGGTCAGGCCTCGCTCCTTTTGCACGACGTTCGG
CAATCCCCCTTAGTTCAGATATGGTGTGCCACGCACAAGCCTGGACCTTC
TATCGAAAGGCCGGGGGGAGAGGCCGTCGCGCGGTGCCTGGGTCTTCTCT
TGCACCCTCCGCCCGCAGCCGTCGAGGAGCACCAGCACCAGCAGTGGCAA
GATCGGTCCCGGCGCCAGCCACTTTTGCAACACTTGCTTTACGAGCGGAA
GAGAGAAAGCTACGGGCGCTTGGGGGGTTATATGGACGACAAATATAGTT
TGCTGCAGCAGCGGCTAGCATCGTCGCCTTCGGGGGCTGAGGGGGCTCGC
CTGATCCTTTGTTGGACGGATCGGGCAAAGGAGATTTATGCATGCCGGGA
GCCTCATCCTGCCACGCCCATCGTCTGAATGATGATGAGAAGGGCGCGTT
GGAATCCTGCGCATGTCAGTGTCGTCACACCTTCGTCTTTCTCACCTTCA
TCCTACGCGCTACAGGCCAATACGTCCCCCTGCACAACGCCGACGAGCAA
GGACTGCCCTTGGTCTCTTCTTCAAAGCAAACATATCATGGCGTCCACAA
TCATCGAGGCGAAGTGGGACGGCATCGAAGAGGAAGACGACTTTGAGGAC
GTTATCCCACGCCAACAAGGCGAACGGGAAATGGAAGATGCGGATAATAA
ACAGAATCAAGACCTGGCCGTCGCCGGGCTGTTTTCCACCCATTTACCGC
CACGAGCAGGGTGCGAATCAACGGGCCCCATGGGAGACCGTGCCAAGCGC
GAAGATTGCTGCGTCATTTGCCACCAAGAGGAATTTGATGCGCAGGTGAA
TGAAATAATTTATTGTGATAGATGTGATTTGGGGTTCCATCAACAATGCT
ATGGTGTGCCAAAGGTCCCGGATGGTGATTTCTTTTGTGAATTCTGCAGT
GTTGCCAAGGAGGACAACGACGACGACGAATGGAACGAGAACGAGGAGGA
GGAAGATGAAGACGACGATGTCATGAGTGAATGCGTGGATGCAGATGCTG
CTGCTGCTGCATTGCGTGCGTCACCGCCATCTTTGTCTTGCCCATCGGCT
TTGCCAGCCTTTGTGCACAAGGTCTGTGCTTTGGCAGGCTGGAATCGACG
GCCACGCCGGCTGGTGCGGTTCGTGGCGGGTACGAACGCTCAAGTGGCCA
TTTTGTCACGTGTTTTGGTGGCAAAGTATCGGTATGCCACGGCCAATGAA
GATGCTGCCGCCGCCCAATGGCAGTCAGTGGACATTGCCATGTGTGGTAT
CTGCTATTCTTCTGTTGGCTTGCTTATTCGTTGTCGCCACCACGATCCTG
AGAGTGAGTTTTTCAAGTGCTCGTTCTATGCTCATGCCGCTTGTGCCTTC
AATGCTGGTCAGGCCTCGCTCCTTTTGCACGACGTTCGGCAATCCCCCTT
AGTTCAGATATGGTGTGCCACGCACAAGCCTGGACCTTCTATCGAAAGGC
CGGGGGGAGAGGCCGTCGCGCGGTGCCTGGGTCTTCTCTTGCACCCTCCG
CCCGCAGCCGTCGAGGAGCACCAGCACCAGCAGTGGCAAGATCGGTCCCG
GCGCCAGCCACTTTTGCAACACTTGCTTTACGAGCGGAAGAGAGAAAGCT
ACGGGCGCTTGGGGGGTTATATGGACGACAAATATAGTTTGCTGCAGCAG
CGGCTAGCATCGTCGCCTTCGGGGGCTGAGGGGGCTCGCCTGATCCTTTG
TTGGACGGATCGGGCAAAGGAGATTTATGCATGCCGGGAGCCTCATCCTG
CCACGCCCATCGTCTGA

Synonyms

Publications