jgi.p|Nanoce1779_2|577482, mRNA_497 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577482
Unique NamemRNA_497
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length828
Alignment locationscaffold_3:1203701..1204741 +

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Properties
Property NameValue
TranscriptId577568
TrackFilteredModels2
ProteinId577482
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1203701..1204741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577482gene_497Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577482mRNA_497-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_497CDS_497Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_497 ID=mRNA_497|Name=jgi.p|Nanoce1779_2|577482|organism=Nannochloropsis oceanica|type=mRNA|length=828bp
GTAGGGTTGAGGCTCGCTTGGGAGATGACTTGACGTCAATCATCCTGATG
ACTGACGCCCAGGGGCATCGATCTACAGCAACCTCGAGGGAGACTGTCCC
GACACGCACACAACCTAACGCAAGCATGACAACCATGAACAGGACTAGAT
AAGCCGGAGCAGTCACGACACAGGTCTGACGACATTCTTAAGACGAGGGG
CCATGAATACTGTCCGAAGTGTCAACGCAGGCTGGGCAGCTTTCGCCTTC
GCGACGCTGAGTGGGGCATATATGGGATGGCGCCGCTTCCTGAAGGAAGA
TGCAGAACGTAGGATTGACTGGGAGCGCATCCAAATTCTGGAAAATGACA
AAATGCGTCGGGAAGCAGAGGCATTGGCCAAGATGGCAGCAGAGCGGAAA
GAGGCCCGACTACTCGAGCGGCAAAAGGAGCAAGACAGCAAACTCCTGAA
GCGCCGACCGCCGAAGAAGACCTTGACAGAGACAATGGGAATCCCCAGCA
CAGTTTCGCCGGGGCCTCCTGTGGTTCACATTCCTACCTCCCTCAAGCAT
CGAATCACGGCCAAAATCATCGCGGACGACGAAAAGGAACAAGAGGCAGA
GGAAAAAGAGGCTGTGGTTCGGAAGATAGCTGCCGCGACTGCAGCCGCTT
CGTGGGCGGCCGCCGTGGCTGCAGGATCTAGTGGTAGTGGAAGTACGCCT
GCACGGAGGGAAAGCAAGAGGAGCAGAAGCAACGGTAGCACCACCATGGA
GTAGCAAATGCATTTTTTGAAGAAGACGTGGCATGTAAATAGATGAAGGG
AGAGGAAGATAATTAGTTCTGGGTTGGC
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protein sequence of jgi.p|Nanoce1779_2|577482

>mRNA_497-protein ID=mRNA_497-protein|Name=jgi.p|Nanoce1779_2|577482|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MNTVRSVNAGWAAFAFATLSGAYMGWRRFLKEDAERRIDWERIQILENDK
MRREAEALAKMAAERKEARLLERQKEQDSKLLKRRPPKKTLTETMGIPST
VSPGPPVVHIPTSLKHRITAKIIADDEKEQEAEEKEAVVRKIAAATAAAS
WAAAVAAGSSGSGSTPARRESKRSRSNGSTTME*
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mRNA from alignment at scaffold_3:1203701..1204741+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_497 ID=mRNA_497|Name=jgi.p|Nanoce1779_2|577482|organism=Nannochloropsis oceanica|type=mRNA|length=1041bp|location=Sequence derived from alignment at scaffold_3:1203701..1204741+ (Nannochloropsis oceanica)
GTAGGGTTGAGGCTCGCTTGGGAGATGACTTGACGTCAATCATCCTGATG
ACTGACGCCCAGGGGCATCGATCTACAGCAACCTCGAGGGAGACTGTCCC
GACACGCACACAACCTAACGCAAGCATGACAACCATGAACAGGACTAGAT
AAGCCGGAGCAGTCACGACACAGGTCTGACGACATTCTTAAGACGAGGGG
CCATGAATACTGTCCGAAGGTAAGCTTGCGCGCTTGCTTGCCTCCCTCTG
TCCAAGCCGGTCGCATGACGTAAAAAAATATGAATGCTCCCTCCCTCCCA
GTCGGAGGTGGCGTTGTAGTAGACTTTGACAGTGTATCCCCTTTCTATTT
TCATGCGATGCCCCCCTTCATATTCGCCCGAACGCAATCTTACCCCCATC
ATCTCCTCCATCTCCTGCACCCCTCTTTAAAGTGTCAACGCAGGCTGGGC
AGCTTTCGCCTTCGCGACGCTGAGTGGGGCATATATGGGATGGCGCCGCT
TCCTGAAGGAAGATGCAGAACGTAGGATTGACTGGGAGCGCATCCAAATT
CTGGAAAATGACAAAATGCGTCGGGAAGCAGAGGCATTGGCCAAGATGGC
AGCAGAGCGGAAAGAGGCCCGACTACTCGAGCGGCAAAAGGAGCAAGACA
GCAAACTCCTGAAGCGCCGACCGCCGAAGAAGACCTTGACAGAGACAATG
GGAATCCCCAGCACAGTTTCGCCGGGGCCTCCTGTGGTTCACATTCCTAC
CTCCCTCAAGCATCGAATCACGGCCAAAATCATCGCGGACGACGAAAAGG
AACAAGAGGCAGAGGAAAAAGAGGCTGTGGTTCGGAAGATAGCTGCCGCG
ACTGCAGCCGCTTCGTGGGCGGCCGCCGTGGCTGCAGGATCTAGTGGTAG
TGGAAGTACGCCTGCACGGAGGGAAAGCAAGAGGAGCAGAAGCAACGGTA
GCACCACCATGGAGTAGCAAATGCATTTTTTGAAGAAGACGTGGCATGTA
AATAGATGAAGGGAGAGGAAGATAATTAGTTCTGGGTTGGC
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Coding sequence (CDS) from alignment at scaffold_3:1203701..1204741+

>mRNA_497 ID=mRNA_497|Name=jgi.p|Nanoce1779_2|577482|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at scaffold_3:1203701..1204741+ (Nannochloropsis oceanica)
ATGAATACTGTCCGAAGTGTCAACGCAGGCTGGGCAGCTTTCGCCTTCGC
GACGCTGAGTGGGGCATATATGGGATGGCGCCGCTTCCTGAAGGAAGATG
CAGAACGTAGGATTGACTGGGAGCGCATCCAAATTCTGGAAAATGACAAA
ATGCGTCGGGAAGCAGAGGCATTGGCCAAGATGGCAGCAGAGCGGAAAGA
GGCCCGACTACTCGAGCGGCAAAAGGAGCAAGACAGCAAACTCCTGAAGC
GCCGACCGCCGAAGAAGACCTTGACAGAGACAATGGGAATCCCCAGCACA
GTTTCGCCGGGGCCTCCTGTGGTTCACATTCCTACCTCCCTCAAGCATCG
AATCACGGCCAAAATCATCGCGGACGACGAAAAGGAACAAGAGGCAGAGG
AAAAAGAGGCTGTGGTTCGGAAGATAGCTGCCGCGACTGCAGCCGCTTCG
TGGGCGGCCGCCGTGGCTGCAGGATCTAGTGGTAGTGGAAGTACGCCTGC
ACGGAGGGAAAGCAAGAGGAGCAGAAGCAACGGTAGCACCACCATGGAGT
AGATGAATACTGTCCGAAGTGTCAACGCAGGCTGGGCAGCTTTCGCCTTC
GCGACGCTGAGTGGGGCATATATGGGATGGCGCCGCTTCCTGAAGGAAGA
TGCAGAACGTAGGATTGACTGGGAGCGCATCCAAATTCTGGAAAATGACA
AAATGCGTCGGGAAGCAGAGGCATTGGCCAAGATGGCAGCAGAGCGGAAA
GAGGCCCGACTACTCGAGCGGCAAAAGGAGCAAGACAGCAAACTCCTGAA
GCGCCGACCGCCGAAGAAGACCTTGACAGAGACAATGGGAATCCCCAGCA
CAGTTTCGCCGGGGCCTCCTGTGGTTCACATTCCTACCTCCCTCAAGCAT
CGAATCACGGCCAAAATCATCGCGGACGACGAAAAGGAACAAGAGGCAGA
GGAAAAAGAGGCTGTGGTTCGGAAGATAGCTGCCGCGACTGCAGCCGCTT
CGTGGGCGGCCGCCGTGGCTGCAGGATCTAGTGGTAGTGGAAGTACGCCT
GCACGGAGGGAAAGCAAGAGGAGCAGAAGCAACGGTAGCACCACCATGGA
GTAG
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Synonyms
Publications