jgi.p|Nanoce1779_2|590963, mRNA_4968 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590963
Unique Name	mRNA_4968
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2397
Alignment location	scaffold_12:145998..148394 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591049
Track	FilteredModels2
ProteinId	590963

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:145998..148394 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590963	gene_4968	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590963	mRNA_4968-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4968	CDS_4968	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:145998..148394-
coding sequence from alignment at scaffold_12:145998..148394-

mRNA sequence

>mRNA_4968 ID=mRNA_4968|Name=jgi.p|Nanoce1779_2|590963|organism=Nannochloropsis oceanica|type=mRNA|length=2397bp
AATCACAGGATGCCTCATACTCCGACACATTTCACACTCCGCGATCATGA
GCTCATATGGCAAATTCTGAGGTATTTAGAAGCGCCCTTCGCGTCTTTCA
TTCGTACTCGCACTGCCTCGCTGCATGGCACAATCCCAGGAAGGCTCATC
CATCGTGCAATCGCCAGCGATCATCGCCAAGTCGCGCCCATAGGCGCCCA
CCTCCCCCTCTTCTCCGATTCAAACTCGCAGAAAGAACCAGCTAGCAATC
CCTCGGCGTGGGAAGTTTGCATGGGCTTCCGCATACGAAAGACGGCTCTC
CACTTGTCGGCAAAATCATCACCAATCTCTAGGCGTGGGCAATTGGAATA
CTACCGAAGCACGAACACGCGCAGCCGTACTCGACGCAGGAGGGCCAGAG
CAACCGACCCACCGAGGGCTGTGGTTTGAATTGCACCATGCCCGTTTTCC
AACAAGCCCACAGCCCCGCGCCTTCATGACACATATACCTCATGTACATT
CTGAGTCTATGCGCCCATGCGTGTACCGCTCACGCCCCACGCCTCGCCCC
GCGTTCCGGGTTGTGTGCGTCGACTGAGACTTTCGGAGTTCAGTGGCTCA
GCCCCCTGCAATCGTTAGTCAGCTTACCCCTCATCTTCTACTGATAACAC
ATAGGTGAATCGCACTCTCAATATACCAAGACAATGGCCGGACGCGGGTT
GCTCACGGTGGGAATGCTGGCCGCCACGGCTTCGGCCACTGTCTATTTCA
AGGAGAACTTCGATGATAAATGGGAGACCCGGTGGGTTGTGCCCAGCAAA
TGGAAGTCGGCAGAGGAGATGGGTAAGTGGGTGCTCACAGCCGGTGACTG
GTTTGGGGACGCCAATGACAAGGGGATCAAGACCACGGAAGACGCTCGCT
TCTACGGCCTCTCGGCCAAGCTGGCCAAACCCTTCTCGAACGAGGGCAAG
GACCTGGTGCTCCAGTTCACCGTCAAGCACGAGCAGCGCTTGGACTGTGG
TGGCGCCTACATCAAATTACTAGGGCCCAAGCTGGATCAAGCCTCCTTTG
GGGGCGATTCGCCCTATCAAATCATGTTCGGTCCCGATATATGTGGCTCG
ACGCAGCGCACGCACGTCATCTTCAACTACCCGCAGGTCAAAAGTGAGGA
AAAGAACCTCCTGATCAAACAGGATGTGCCCACGCGCACGGATCAGCTCA
GTCATCTGTACACGCTGCACCTCATTGCTGCAAACAACTCGTTCAACGTC
CTCATCGACGGCGAGTCCGTTCGCGCCGGTGCCCTGGAGGGCGCCTGGGA
CTTTCTCCCGCCCAAGACCATCCCGGACCCAGCCCAGAGCAAGCCAGCGG
ACTGGGTGGACGAGGCGATGATTGTGGATCCGTCAGATATCAAGCCGGCC
GGCTGGGACGACATCCCCGCCACCGTGCCTGACGCTGAGGCCGTTCAGCC
CGAGGACTGGGACGAGGAGGAGGATGGGGCCTGGGAGGCGCCCATGGTGG
ACAACCCCGAGTACATGGGCACCTGGACGCCCAGGATGATCGACAACCCG
GCCTACAAGGGCGTCTGGGAGCACCCGCAAGTGCCAAACCCCGACTACTT
CGAGGACCCCAAGCTGCACGCACGCGCCAAGGAGGTGACGGCTGTCGGCT
TCGAGCTCTGGCAAGTCAAGTCGGGCACCATGTTCGACGACATCATCCTG
ACTGACTCACTGGATGAGGCCAAAGCCTATGCGAAGGATACATTTTGGGC
CAAGAAGGAGGGCGAGAAAGCTATGTTCGACGCGGCCGAGGCGGTGCGCG
TGGAGAAAGAGAAGGCTGAGCGCGAAGAGATGATGAAGAACGCCAAGGTC
AATGGGGAAGATGGTGAGAGCATGTTCTCTGGCTCCGATATTGAGATCTC
CGAGATGGACGAAGACGACGAGGACGAAGACGACGAGGACGGGGAGATCA
CCTTCTCAGACGAGCTCTAGAGTGACATAGGAAAGAAGGAGAACATGCTT
CCGCAACGACTTGACTGATTGCTGCTGCTTTGTCGCGTAACAGCCAATTA
TAGCAATGTGTCTGACTGTTGGCGATGACATTAGAGGCAGGAAATGCTCT
CAATCCCACGTGTGTCTTGGTGGGTGTGCTCGGCTCTCCCACCAGAAGGC
GTCTCTCAGCAGAGGGGGGCAGGGGTGGGGGAGGGAAGCAGAGTATCGCT
TCCATGCCATCAAAGCTTCAAAAACGTAGGCACAAAAGGAAAGCTACATA
GAATCACTCGATCAAGAAAACCCCTTTACGTTATATTTGTCTTTGGTTTG
ACCCATACCATCAAAGCTTCAAAACGTAAGCGCCCAAAAAAAAGAAAGCG
ACGTAGAATCATTCGATCAGGGAAACCCCTAAACGTTATGTTTGTCA

protein sequence of jgi.p|Nanoce1779_2|590963

>mRNA_4968-protein ID=mRNA_4968-protein|Name=jgi.p|Nanoce1779_2|590963|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MAGRGLLTVGMLAATASATVYFKENFDDKWETRWVVPSKWKSAEEMGKWV
LTAGDWFGDANDKGIKTTEDARFYGLSAKLAKPFSNEGKDLVLQFTVKHE
QRLDCGGAYIKLLGPKLDQASFGGDSPYQIMFGPDICGSTQRTHVIFNYP
QVKSEEKNLLIKQDVPTRTDQLSHLYTLHLIAANNSFNVLIDGESVRAGA
LEGAWDFLPPKTIPDPAQSKPADWVDEAMIVDPSDIKPAGWDDIPATVPD
AEAVQPEDWDEEEDGAWEAPMVDNPEYMGTWTPRMIDNPAYKGVWEHPQV
PNPDYFEDPKLHARAKEVTAVGFELWQVKSGTMFDDIILTDSLDEAKAYA
KDTFWAKKEGEKAMFDAAEAVRVEKEKAEREEMMKNAKVNGEDGESMFSG
SDIEISEMDEDDEDEDDEDGEITFSDEL*

mRNA from alignment at scaffold_12:145998..148394-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4968 ID=mRNA_4968|Name=jgi.p|Nanoce1779_2|590963|organism=Nannochloropsis oceanica|type=mRNA|length=2397bp|location=Sequence derived from alignment at scaffold_12:145998..148394- (Nannochloropsis oceanica)
AATCACAGGATGCCTCATACTCCGACACATTTCACACTCCGCGATCATGA
GCTCATATGGCAAATTCTGAGGTATTTAGAAGCGCCCTTCGCGTCTTTCA
TTCGTACTCGCACTGCCTCGCTGCATGGCACAATCCCAGGAAGGCTCATC
CATCGTGCAATCGCCAGCGATCATCGCCAAGTCGCGCCCATAGGCGCCCA
CCTCCCCCTCTTCTCCGATTCAAACTCGCAGAAAGAACCAGCTAGCAATC
CCTCGGCGTGGGAAGTTTGCATGGGCTTCCGCATACGAAAGACGGCTCTC
CACTTGTCGGCAAAATCATCACCAATCTCTAGGCGTGGGCAATTGGAATA
CTACCGAAGCACGAACACGCGCAGCCGTACTCGACGCAGGAGGGCCAGAG
CAACCGACCCACCGAGGGCTGTGGTTTGAATTGCACCATGCCCGTTTTCC
AACAAGCCCACAGCCCCGCGCCTTCATGACACATATACCTCATGTACATT
CTGAGTCTATGCGCCCATGCGTGTACCGCTCACGCCCCACGCCTCGCCCC
GCGTTCCGGGTTGTGTGCGTCGACTGAGACTTTCGGAGTTCAGTGGCTCA
GCCCCCTGCAATCGTTAGTCAGCTTACCCCTCATCTTCTACTGATAACAC
ATAGGTGAATCGCACTCTCAATATACCAAGACAATGGCCGGACGCGGGTT
GCTCACGGTGGGAATGCTGGCCGCCACGGCTTCGGCCACTGTCTATTTCA
AGGAGAACTTCGATGATAAATGGGAGACCCGGTGGGTTGTGCCCAGCAAA
TGGAAGTCGGCAGAGGAGATGGGTAAGTGGGTGCTCACAGCCGGTGACTG
GTTTGGGGACGCCAATGACAAGGGGATCAAGACCACGGAAGACGCTCGCT
TCTACGGCCTCTCGGCCAAGCTGGCCAAACCCTTCTCGAACGAGGGCAAG
GACCTGGTGCTCCAGTTCACCGTCAAGCACGAGCAGCGCTTGGACTGTGG
TGGCGCCTACATCAAATTACTAGGGCCCAAGCTGGATCAAGCCTCCTTTG
GGGGCGATTCGCCCTATCAAATCATGTTCGGTCCCGATATATGTGGCTCG
ACGCAGCGCACGCACGTCATCTTCAACTACCCGCAGGTCAAAAGTGAGGA
AAAGAACCTCCTGATCAAACAGGATGTGCCCACGCGCACGGATCAGCTCA
GTCATCTGTACACGCTGCACCTCATTGCTGCAAACAACTCGTTCAACGTC
CTCATCGACGGCGAGTCCGTTCGCGCCGGTGCCCTGGAGGGCGCCTGGGA
CTTTCTCCCGCCCAAGACCATCCCGGACCCAGCCCAGAGCAAGCCAGCGG
ACTGGGTGGACGAGGCGATGATTGTGGATCCGTCAGATATCAAGCCGGCC
GGCTGGGACGACATCCCCGCCACCGTGCCTGACGCTGAGGCCGTTCAGCC
CGAGGACTGGGACGAGGAGGAGGATGGGGCCTGGGAGGCGCCCATGGTGG
ACAACCCCGAGTACATGGGCACCTGGACGCCCAGGATGATCGACAACCCG
GCCTACAAGGGCGTCTGGGAGCACCCGCAAGTGCCAAACCCCGACTACTT
CGAGGACCCCAAGCTGCACGCACGCGCCAAGGAGGTGACGGCTGTCGGCT
TCGAGCTCTGGCAAGTCAAGTCGGGCACCATGTTCGACGACATCATCCTG
ACTGACTCACTGGATGAGGCCAAAGCCTATGCGAAGGATACATTTTGGGC
CAAGAAGGAGGGCGAGAAAGCTATGTTCGACGCGGCCGAGGCGGTGCGCG
TGGAGAAAGAGAAGGCTGAGCGCGAAGAGATGATGAAGAACGCCAAGGTC
AATGGGGAAGATGGTGAGAGCATGTTCTCTGGCTCCGATATTGAGATCTC
CGAGATGGACGAAGACGACGAGGACGAAGACGACGAGGACGGGGAGATCA
CCTTCTCAGACGAGCTCTAGAGTGACATAGGAAAGAAGGAGAACATGCTT
CCGCAACGACTTGACTGATTGCTGCTGCTTTGTCGCGTAACAGCCAATTA
TAGCAATGTGTCTGACTGTTGGCGATGACATTAGAGGCAGGAAATGCTCT
CAATCCCACGTGTGTCTTGGTGGGTGTGCTCGGCTCTCCCACCAGAAGGC
GTCTCTCAGCAGAGGGGGGCAGGGGTGGGGGAGGGAAGCAGAGTATCGCT
TCCATGCCATCAAAGCTTCAAAAACGTAGGCACAAAAGGAAAGCTACATA
GAATCACTCGATCAAGAAAACCCCTTTACGTTATATTTGTCTTTGGTTTG
ACCCATACCATCAAAGCTTCAAAACGTAAGCGCCCAAAAAAAAGAAAGCG
ACGTAGAATCATTCGATCAGGGAAACCCCTAAACGTTATGTTTGTCA

Coding sequence (CDS) from alignment at scaffold_12:145998..148394-

>mRNA_4968 ID=mRNA_4968|Name=jgi.p|Nanoce1779_2|590963|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at scaffold_12:145998..148394- (Nannochloropsis oceanica)
ATGGCCGGACGCGGGTTGCTCACGGTGGGAATGCTGGCCGCCACGGCTTC
GGCCACTGTCTATTTCAAGGAGAACTTCGATGATAAATGGGAGACCCGGT
GGGTTGTGCCCAGCAAATGGAAGTCGGCAGAGGAGATGGGTAAGTGGGTG
CTCACAGCCGGTGACTGGTTTGGGGACGCCAATGACAAGGGGATCAAGAC
CACGGAAGACGCTCGCTTCTACGGCCTCTCGGCCAAGCTGGCCAAACCCT
TCTCGAACGAGGGCAAGGACCTGGTGCTCCAGTTCACCGTCAAGCACGAG
CAGCGCTTGGACTGTGGTGGCGCCTACATCAAATTACTAGGGCCCAAGCT
GGATCAAGCCTCCTTTGGGGGCGATTCGCCCTATCAAATCATGTTCGGTC
CCGATATATGTGGCTCGACGCAGCGCACGCACGTCATCTTCAACTACCCG
CAGGTCAAAAGTGAGGAAAAGAACCTCCTGATCAAACAGGATGTGCCCAC
GCGCACGGATCAGCTCAGTCATCTGTACACGCTGCACCTCATTGCTGCAA
ACAACTCGTTCAACGTCCTCATCGACGGCGAGTCCGTTCGCGCCGGTGCC
CTGGAGGGCGCCTGGGACTTTCTCCCGCCCAAGACCATCCCGGACCCAGC
CCAGAGCAAGCCAGCGGACTGGGTGGACGAGGCGATGATTGTGGATCCGT
CAGATATCAAGCCGGCCGGCTGGGACGACATCCCCGCCACCGTGCCTGAC
GCTGAGGCCGTTCAGCCCGAGGACTGGGACGAGGAGGAGGATGGGGCCTG
GGAGGCGCCCATGGTGGACAACCCCGAGTACATGGGCACCTGGACGCCCA
GGATGATCGACAACCCGGCCTACAAGGGCGTCTGGGAGCACCCGCAAGTG
CCAAACCCCGACTACTTCGAGGACCCCAAGCTGCACGCACGCGCCAAGGA
GGTGACGGCTGTCGGCTTCGAGCTCTGGCAAGTCAAGTCGGGCACCATGT
TCGACGACATCATCCTGACTGACTCACTGGATGAGGCCAAAGCCTATGCG
AAGGATACATTTTGGGCCAAGAAGGAGGGCGAGAAAGCTATGTTCGACGC
GGCCGAGGCGGTGCGCGTGGAGAAAGAGAAGGCTGAGCGCGAAGAGATGA
TGAAGAACGCCAAGGTCAATGGGGAAGATGGTGAGAGCATGTTCTCTGGC
TCCGATATTGAGATCTCCGAGATGGACGAAGACGACGAGGACGAAGACGA
CGAGGACGGGGAGATCACCTTCTCAGACGAGCTCTAG

Synonyms

Publications