jgi.p|Nanoce1779_2|590959, mRNA_4967 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590959
Unique Name	mRNA_4967
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1791
Alignment location	scaffold_12:143908..145698 -

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Properties


Property Name	Value
TranscriptId	591045
Track	FilteredModels2
ProteinId	590959

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:143908..145698 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590959	gene_4967	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590959	mRNA_4967-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4967	CDS_4967	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:143908..145698-
coding sequence from alignment at scaffold_12:143908..145698-

mRNA sequence

>mRNA_4967 ID=mRNA_4967|Name=jgi.p|Nanoce1779_2|590959|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp
CAGTACTCCAAGCCCCTACAGTCAAACACGCACAATGGGGCCTGCCAAGG
TACAGATTAAGTGGAACAAACAGACTTTTACGGATGTCCCATTGGACATC
ACTCAGCCCGCCTTGGCTTTCAAACAGCATGTCTCCGAGCTGACAGGCGT
GCCCGTGGAGCGGCAAAAGCTCATGGGAAAGGGTTTGTGGAAGCTAGCCC
TCAAAGATGACGAGGACCTTTCCAAGCTCATCGTCAAGGACGGAGCGGTA
GTTATGCTGGTGGGAACGGCAGACGTGGTCAAAGAACCCGCGGAGAAGGT
AGTTTTTGTGGAGGACATGGCACAGGCCGATCAGGCCAAGTCTGGTGCAA
TTCTCCCCGCGGGCCTGCGCAATCTCGGCAACACTTGCTATCTCAACTCT
ACACTGCAGTGCTTGCGATACGTGCCGGAGCTCCGACAAGCTCTGAACCT
GTTCACGGGCACGGGCACCAACCAACAACCCTTCTTGACGAACGCCCTCA
AGGACACGCTCAACCTGCTGGACGGTACTACCGAGCCCGTACCGCCGATG
CAGTTCGTCATGCTTCTGCGCCAGCAATTTCCGCAATTCGCCCAGCAATC
TCGGGGCCACTTTATGCAGCAGGATGCGGATGAGTTTTTGAATGAGCTGC
TAACCTCGCTGGCCGCTAATCTGCGCGAGGCGTACGTGCTGCCCACGCTG
GAGGACGCGGGAAACTTCGTGGACGCTCTGCTGGGCATGGAGGTGGAGGA
CACCCTGACCTGTGCTGAGACGGAGGCAGAGCCGGCTGTGCTTAAACGCG
ACCAAGTGCGTAAGCTGGTGTGCAACATTCAGGGCGGTGCGGGCAGCGAC
GTGAAGATAAACTACCTGCATGAGGGCGTCAAGCTAGCGCTGGAGGGCAC
CATCGAGAAGCAGAGCGCGGTGCTGGGCCGGAACGCGGTCTGGAACAAGA
CAACGCGCATTTCACGCTTGCCCCGCTACCTGTGCGTACAGTTTATGCGC
TTCTTCTGGAAGGCTACTCCGGACAGCCAGGACCACGCCGGTGTCAAATG
CAAGTCCCTTCGCACCGTTACCTTTCCCGAGACCCTGGACATGTTCGACT
TCTGCAACAAGACGCTGCAGGATCGGCTTATGATCACGCGTGAGAAGGAA
GTAGACGAAATCTTGGGTAAGGGTCTGGATAAGGAGGACATGGGCGATGA
AAGCAAGGACATTGCCGTGGCCGACGCTGGGGTTGCCGACGTTGAGGACG
AGGAGGAGAAGGCCGCGCTGCGAGCGGCGCTAGCCATGTCCATGGCGGAG
TCGGCGAACGCGGTTGTGTCTCCTACACCGTGCGGACCCGGACTGCCTCT
GGATTTCAAGGGCATTTACGAGCTATTCGGCGTGGTGACGCACAAGGGTC
GGACAGCAGACGGCGGACACTACATGGGCTGGGTCCGGCAGAAGGGCGAT
AACTGGCTAGTCTTCGACGACGAGGACGTGTCGGAGTGCAAGACGTCTGA
AGTACTACAGCTCTCAGGGGGCGGGGACTGGCATATGGCGTACCTCTGCT
TCTATCGCTACAAGGGCACAGGAGGTGTCGAAGACGAGAAGGCCTCTGCG
GCAGCGGCTGAGAAGTGAAACACTTGTAAGGGCGACGGAAGCTTGGAGAG
CGAAATATTCGAGAACTATGGCAGGAACTACAGTTTCAAAAGCAGGCCGC
TGTTTATGTAGGATACTTGAATGGAAAACGGCTGAAATAGGTCAGGACCA
GCACGCGAAGAGAAGGAAAGTTACGATAAACGAATGAGACT

protein sequence of jgi.p|Nanoce1779_2|590959

>mRNA_4967-protein ID=mRNA_4967-protein|Name=jgi.p|Nanoce1779_2|590959|organism=Nannochloropsis oceanica|type=polypeptide|length=528bp
MGPAKVQIKWNKQTFTDVPLDITQPALAFKQHVSELTGVPVERQKLMGKG
LWKLALKDDEDLSKLIVKDGAVVMLVGTADVVKEPAEKVVFVEDMAQADQ
AKSGAILPAGLRNLGNTCYLNSTLQCLRYVPELRQALNLFTGTGTNQQPF
LTNALKDTLNLLDGTTEPVPPMQFVMLLRQQFPQFAQQSRGHFMQQDADE
FLNELLTSLAANLREAYVLPTLEDAGNFVDALLGMEVEDTLTCAETEAEP
AVLKRDQVRKLVCNIQGGAGSDVKINYLHEGVKLALEGTIEKQSAVLGRN
AVWNKTTRISRLPRYLCVQFMRFFWKATPDSQDHAGVKCKSLRTVTFPET
LDMFDFCNKTLQDRLMITREKEVDEILGKGLDKEDMGDESKDIAVADAGV
ADVEDEEEKAALRAALAMSMAESANAVVSPTPCGPGLPLDFKGIYELFGV
VTHKGRTADGGHYMGWVRQKGDNWLVFDDEDVSECKTSEVLQLSGGGDWH
MAYLCFYRYKGTGGVEDEKASAAAAEK*

mRNA from alignment at scaffold_12:143908..145698-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4967 ID=mRNA_4967|Name=jgi.p|Nanoce1779_2|590959|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp|location=Sequence derived from alignment at scaffold_12:143908..145698- (Nannochloropsis oceanica)
CAGTACTCCAAGCCCCTACAGTCAAACACGCACAATGGGGCCTGCCAAGG
TACAGATTAAGTGGAACAAACAGACTTTTACGGATGTCCCATTGGACATC
ACTCAGCCCGCCTTGGCTTTCAAACAGCATGTCTCCGAGCTGACAGGCGT
GCCCGTGGAGCGGCAAAAGCTCATGGGAAAGGGTTTGTGGAAGCTAGCCC
TCAAAGATGACGAGGACCTTTCCAAGCTCATCGTCAAGGACGGAGCGGTA
GTTATGCTGGTGGGAACGGCAGACGTGGTCAAAGAACCCGCGGAGAAGGT
AGTTTTTGTGGAGGACATGGCACAGGCCGATCAGGCCAAGTCTGGTGCAA
TTCTCCCCGCGGGCCTGCGCAATCTCGGCAACACTTGCTATCTCAACTCT
ACACTGCAGTGCTTGCGATACGTGCCGGAGCTCCGACAAGCTCTGAACCT
GTTCACGGGCACGGGCACCAACCAACAACCCTTCTTGACGAACGCCCTCA
AGGACACGCTCAACCTGCTGGACGGTACTACCGAGCCCGTACCGCCGATG
CAGTTCGTCATGCTTCTGCGCCAGCAATTTCCGCAATTCGCCCAGCAATC
TCGGGGCCACTTTATGCAGCAGGATGCGGATGAGTTTTTGAATGAGCTGC
TAACCTCGCTGGCCGCTAATCTGCGCGAGGCGTACGTGCTGCCCACGCTG
GAGGACGCGGGAAACTTCGTGGACGCTCTGCTGGGCATGGAGGTGGAGGA
CACCCTGACCTGTGCTGAGACGGAGGCAGAGCCGGCTGTGCTTAAACGCG
ACCAAGTGCGTAAGCTGGTGTGCAACATTCAGGGCGGTGCGGGCAGCGAC
GTGAAGATAAACTACCTGCATGAGGGCGTCAAGCTAGCGCTGGAGGGCAC
CATCGAGAAGCAGAGCGCGGTGCTGGGCCGGAACGCGGTCTGGAACAAGA
CAACGCGCATTTCACGCTTGCCCCGCTACCTGTGCGTACAGTTTATGCGC
TTCTTCTGGAAGGCTACTCCGGACAGCCAGGACCACGCCGGTGTCAAATG
CAAGTCCCTTCGCACCGTTACCTTTCCCGAGACCCTGGACATGTTCGACT
TCTGCAACAAGACGCTGCAGGATCGGCTTATGATCACGCGTGAGAAGGAA
GTAGACGAAATCTTGGGTAAGGGTCTGGATAAGGAGGACATGGGCGATGA
AAGCAAGGACATTGCCGTGGCCGACGCTGGGGTTGCCGACGTTGAGGACG
AGGAGGAGAAGGCCGCGCTGCGAGCGGCGCTAGCCATGTCCATGGCGGAG
TCGGCGAACGCGGTTGTGTCTCCTACACCGTGCGGACCCGGACTGCCTCT
GGATTTCAAGGGCATTTACGAGCTATTCGGCGTGGTGACGCACAAGGGTC
GGACAGCAGACGGCGGACACTACATGGGCTGGGTCCGGCAGAAGGGCGAT
AACTGGCTAGTCTTCGACGACGAGGACGTGTCGGAGTGCAAGACGTCTGA
AGTACTACAGCTCTCAGGGGGCGGGGACTGGCATATGGCGTACCTCTGCT
TCTATCGCTACAAGGGCACAGGAGGTGTCGAAGACGAGAAGGCCTCTGCG
GCAGCGGCTGAGAAGTGAAACACTTGTAAGGGCGACGGAAGCTTGGAGAG
CGAAATATTCGAGAACTATGGCAGGAACTACAGTTTCAAAAGCAGGCCGC
TGTTTATGTAGGATACTTGAATGGAAAACGGCTGAAATAGGTCAGGACCA
GCACGCGAAGAGAAGGAAAGTTACGATAAACGAATGAGACT

Coding sequence (CDS) from alignment at scaffold_12:143908..145698-

>mRNA_4967 ID=mRNA_4967|Name=jgi.p|Nanoce1779_2|590959|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_12:143908..145698- (Nannochloropsis oceanica)
ATGGGGCCTGCCAAGGTACAGATTAAGTGGAACAAACAGACTTTTACGGA
TGTCCCATTGGACATCACTCAGCCCGCCTTGGCTTTCAAACAGCATGTCT
CCGAGCTGACAGGCGTGCCCGTGGAGCGGCAAAAGCTCATGGGAAAGGGT
TTGTGGAAGCTAGCCCTCAAAGATGACGAGGACCTTTCCAAGCTCATCGT
CAAGGACGGAGCGGTAGTTATGCTGGTGGGAACGGCAGACGTGGTCAAAG
AACCCGCGGAGAAGGTAGTTTTTGTGGAGGACATGGCACAGGCCGATCAG
GCCAAGTCTGGTGCAATTCTCCCCGCGGGCCTGCGCAATCTCGGCAACAC
TTGCTATCTCAACTCTACACTGCAGTGCTTGCGATACGTGCCGGAGCTCC
GACAAGCTCTGAACCTGTTCACGGGCACGGGCACCAACCAACAACCCTTC
TTGACGAACGCCCTCAAGGACACGCTCAACCTGCTGGACGGTACTACCGA
GCCCGTACCGCCGATGCAGTTCGTCATGCTTCTGCGCCAGCAATTTCCGC
AATTCGCCCAGCAATCTCGGGGCCACTTTATGCAGCAGGATGCGGATGAG
TTTTTGAATGAGCTGCTAACCTCGCTGGCCGCTAATCTGCGCGAGGCGTA
CGTGCTGCCCACGCTGGAGGACGCGGGAAACTTCGTGGACGCTCTGCTGG
GCATGGAGGTGGAGGACACCCTGACCTGTGCTGAGACGGAGGCAGAGCCG
GCTGTGCTTAAACGCGACCAAGTGCGTAAGCTGGTGTGCAACATTCAGGG
CGGTGCGGGCAGCGACGTGAAGATAAACTACCTGCATGAGGGCGTCAAGC
TAGCGCTGGAGGGCACCATCGAGAAGCAGAGCGCGGTGCTGGGCCGGAAC
GCGGTCTGGAACAAGACAACGCGCATTTCACGCTTGCCCCGCTACCTGTG
CGTACAGTTTATGCGCTTCTTCTGGAAGGCTACTCCGGACAGCCAGGACC
ACGCCGGTGTCAAATGCAAGTCCCTTCGCACCGTTACCTTTCCCGAGACC
CTGGACATGTTCGACTTCTGCAACAAGACGCTGCAGGATCGGCTTATGAT
CACGCGTGAGAAGGAAGTAGACGAAATCTTGGGTAAGGGTCTGGATAAGG
AGGACATGGGCGATGAAAGCAAGGACATTGCCGTGGCCGACGCTGGGGTT
GCCGACGTTGAGGACGAGGAGGAGAAGGCCGCGCTGCGAGCGGCGCTAGC
CATGTCCATGGCGGAGTCGGCGAACGCGGTTGTGTCTCCTACACCGTGCG
GACCCGGACTGCCTCTGGATTTCAAGGGCATTTACGAGCTATTCGGCGTG
GTGACGCACAAGGGTCGGACAGCAGACGGCGGACACTACATGGGCTGGGT
CCGGCAGAAGGGCGATAACTGGCTAGTCTTCGACGACGAGGACGTGTCGG
AGTGCAAGACGTCTGAAGTACTACAGCTCTCAGGGGGCGGGGACTGGCAT
ATGGCGTACCTCTGCTTCTATCGCTACAAGGGCACAGGAGGTGTCGAAGA
CGAGAAGGCCTCTGCGGCAGCGGCTGAGAAGTGA

Synonyms

Publications