jgi.p|Nanoce1779_2|590958, mRNA_4966 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590958
Unique Name	mRNA_4966
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2228
Alignment location	scaffold_12:141436..143907 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591044
Track	FilteredModels2
ProteinId	590958

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:141436..143907 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590958	gene_4966	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590958	mRNA_4966-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4966	CDS_4966	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:141436..143907+
coding sequence from alignment at scaffold_12:141436..143907+

mRNA sequence

>mRNA_4966 ID=mRNA_4966|Name=jgi.p|Nanoce1779_2|590958|organism=Nannochloropsis oceanica|type=mRNA|length=2228bp
CAGCTGCAGATTGCTACTTTACCTGCAGGACTGGCTGGTGAACTCTCCCG
ATATCGCCTTTAGCCACGGACAAGAAGGACATCGTGCGTGGCGAAGCAAG
ACGGGCACCCTCGGGCGAGGCTGCAGAAGTGAGCCATGCCGTTCCCTTGT
CCTGTCCCACGGCGCAACAACGAAGAGAGGATGGACGCTTTATTCAAGGC
ACAGCGAGGAAGGAAAGAGTCGGAGCGCCCACGGCGGGGGAGAAGAAGAG
GCAGTCCGACAGGGACAAGCACGAAAAGGGTGCTTTTGGGCAGCGCGGTG
TTCCATGTTTTGTGCCTCAGGGCATCCGGCATGCCAACCGCATTTGGTTT
GCCAATCTCACTTGCGACCTTCGGAAGGCCCGACGACGCGGCCAGGATGT
CGGCAACCAGGGAGAGAGGGACTGTATATTGGAGTACAACCGAACGTACG
AGTGCCAACGAGCGTGATGCGTACGACTTCGAGAGCGACGACCAGAGGAC
AATAGAAAGTCTGTCGCGATCATCGCAACGACCAGCATCAAGGATCGGGC
AGCTATTCTCGCGACTTTTACCCAGGGCGGCCCTGATAGTGCTTGGCGGG
GGTTGGCTTGGGAGTGGCAGCGGGAGAGGGGGTTTTCTGAACGATGGAGG
GTGGCCGTATGCGGCTCGTGCGGAGGATGAATTGGCGCAATACGCGAAGG
AAGGCAACAAAGTGGGGGTCGACGCAAAGTGCTTCGTGCAAAAGTGCTCA
CTGTCCACGCACGACTGCCTCAATAACCCGGACTGTCTCAAGGGCCTGTC
CTGCCTCTCCAAATGCAAGGGCGAGGGAACATGCTCCACTGCATGCTTCG
CCAAGTACGGCAATGGAGTGCTGGATAACTTCTTGCACTGTGCCGTGGAG
CAACAGGACTGCGTACACGTGCCGCGCGACCGGTCGCGGGCCACCTGGAC
GGACCCGGACACGGTGGGGCTGGACAAACAGATCTCGCCCTCCTTCCAGA
TCTCCTCGCTGGAGGGCCGATGGTACAAAGTGATGGGCATGGATGCGCGC
TATGACTGCTTTGACTGCCAGGTAAACCACTTTTCGCCCAAACCGGGCGG
CACAGACACCATGCTAGCCGACGTATCCTTCCGTATGCCCAGACCGCGCG
CCCCGGGCTTCTGGGAAAATCACATCACAGAGGAATTGCTAGGGGACGGG
TCAGGCGCACACCGATCCATGCACTCGGTAGGACGCATGTTCGGGCTAAC
GTTCTGGGAGAACTGGTACGTGATCGGCGAGAACGCGGCCGAGGACTCGG
AGTTGCCGGCCTACAAGTTCGTCTACTACACGGGCCACACTCTGCAGGGC
AACTACGAGGGCGCCTTTGTCTACGCCCGCACGCCCGAGCTACCGCCCGA
ACTTTTGTCATCTATCTCCCGGGTAGCGCGTGCCAATGGACTCGATCCCA
CCAAGTTTTGCAAGATCCGCAACGCCTGCTTCCGCCCGGATGCGCCACCC
CTCGAGGCGGGCACATCTTCCCCCGTGGATGGCATGAAGCTTACCACCGT
GGCCCCCACCTCCTTCGCAGGGATAAAGGGTTGGCTGAAAACCCGCGCTT
TATGGCTGCCCCGGCAGGTTTCGGAACTGAAAGCGGCCATGACGCGGGAA
CTGGACGACTGGTTCGAGGACCCGACCAAGACCAGCGACTGGCTGATGAG
GCAGCAAGAGCGTATGATAATGGTTGCGGATGAGCCGCGCGCGGGCGCCG
TGCAAGTCATCGCCAGTCGTACCTCAGAAGACGGTAACGGCGGCGACAAA
AGTGGCGACAATACCGTTTCAACTCCTCTTCCTGCTCATTCTGGTGCGAT
TGCCGCAGCTTCCTCGACGGTCCAGTTGGATAGTGGGAAAGGCAGTAGAA
GCACTAGCGGTGGTGGACTGCCACCAGTATTTGTGGACTATTTGGCCAAA
AAGAGTCCTTAGGTAGATTAGGAGGTTGTTGCATGTTTTGATGTCCCCAC
AACATGCGTTGTTCCTCCCTTGTTTCTTGTTTTCATTGTTTTTATTAGGA
CACAGCAATGCATGTAACGACAAAGGATCTGATTCATGCTCTGCCTGAAT
GCAAACAGAAAAGTAGCGAGTAGATTTATCTCACGGTCGTATGAAAAAAT
AAAACGAGATTTAGATAGGGCTATCTTGACGGCTTGATAAGTAACATGGA
CAGACACATCCATAGACCTTTTGAACCA

protein sequence of jgi.p|Nanoce1779_2|590958

>mRNA_4966-protein ID=mRNA_4966-protein|Name=jgi.p|Nanoce1779_2|590958|organism=Nannochloropsis oceanica|type=polypeptide|length=609bp
MPFPCPVPRRNNEERMDALFKAQRGRKESERPRRGRRRGSPTGTSTKRVL
LGSAVFHVLCLRASGMPTAFGLPISLATFGRPDDAARMSATRERGTVYWS
TTERTSANERDAYDFESDDQRTIESLSRSSQRPASRIGQLFSRLLPRAAL
IVLGGGWLGSGSGRGGFLNDGGWPYAARAEDELAQYAKEGNKVGVDAKCF
VQKCSLSTHDCLNNPDCLKGLSCLSKCKGEGTCSTACFAKYGNGVLDNFL
HCAVEQQDCVHVPRDRSRATWTDPDTVGLDKQISPSFQISSLEGRWYKVM
GMDARYDCFDCQVNHFSPKPGGTDTMLADVSFRMPRPRAPGFWENHITEE
LLGDGSGAHRSMHSVGRMFGLTFWENWYVIGENAAEDSELPAYKFVYYTG
HTLQGNYEGAFVYARTPELPPELLSSISRVARANGLDPTKFCKIRNACFR
PDAPPLEAGTSSPVDGMKLTTVAPTSFAGIKGWLKTRALWLPRQVSELKA
AMTRELDDWFEDPTKTSDWLMRQQERMIMVADEPRAGAVQVIASRTSEDG
NGGDKSGDNTVSTPLPAHSGAIAAASSTVQLDSGKGSRSTSGGGLPPVFV
DYLAKKSP*

mRNA from alignment at scaffold_12:141436..143907+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4966 ID=mRNA_4966|Name=jgi.p|Nanoce1779_2|590958|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp|location=Sequence derived from alignment at scaffold_12:141436..143907+ (Nannochloropsis oceanica)
CAGCTGCAGATTGCTACTTTACCTGCAGGACTGGCTGGTGAACTCTCCCG
ATATCGCCTTTAGCCACGGACAAGAAGGACATCGTGCGTGGCGAAGCAAG
ACGGGCACCCTCGGGCGAGGCTGCAGAAGTGAGCCATGCCGTTCCCTTGT
CCTGTCCCACGGCGCAACAACGAAGAGAGGATGGACGCTTTATTCAAGGC
ACAGCGAGGAAGGAAAGAGTCGGAGCGCCCACGGCGGGGGAGAAGAAGAG
GCAGTCCGACAGGGACAAGCACGAAAAGGGTGCTTTTGGGCAGCGCGGTG
AGCAATTCGTGCATATGTTTCGTCTGCCTGTCAACGGCCAATTAATACTA
TTGCTTTTTTAAATTACAAATGTTCCTTTTTTGGGAGGAAAGCAATTACG
TATGGTAGGCCCCCATGATTGGGCCAACGTCCTGTCTTCCGTCACTTTGC
CATGGAATGCCAAAACGGCTGTTTGATTCTATGGTGTACTTTCGCACCCT
CCCTTCTTGATACTGATCACATGATACACGCACACACGCAGGTGTTCCAT
GTTTTGTGCCTCAGGGCATCCGGCATGCCAACCGCATTTGGTTTGCCAAT
CTCACTTGCGACCTTCGGAAGGCCCGACGACGCGGCCAGGATGTCGGCAA
CCAGGGAGAGAGGGACTGTATATTGGAGTACAACCGAACGTACGAGTGCC
AACGAGCGTGATGCGTACGACTTCGAGAGCGACGACCAGAGGACAATAGA
AAGTCTGTCGCGATCATCGCAACGACCAGCATCAAGGATCGGGCAGCTAT
TCTCGCGACTTTTACCCAGGGCGGCCCTGATAGTGCTTGGCGGGGGTTGG
CTTGGGAGTGGCAGCGGGAGAGGGGGTTTTCTGAACGATGGAGGGTGGCC
GTATGCGGCTCGTGCGGAGGATGAATTGGCGCAATACGCGAAGGAAGGCA
ACAAAGTGGGGGTCGACGCAAAGTGCTTCGTGCAAAAGTGCTCACTGTCC
ACGCACGACTGCCTCAATAACCCGGACTGTCTCAAGGGCCTGTCCTGCCT
CTCCAAATGCAAGGGCGAGGGAACATGCTCCACTGCATGCTTCGCCAAGT
ACGGCAATGGAGTGCTGGATAACTTCTTGCACTGTGCCGTGGAGCAACAG
GACTGCGTACACGTGCCGCGCGACCGGTCGCGGGCCACCTGGACGGACCC
GGACACGGTGGGGCTGGACAAACAGATCTCGCCCTCCTTCCAGATCTCCT
CGCTGGAGGGCCGATGGTACAAAGTGATGGGCATGGATGCGCGCTATGAC
TGCTTTGACTGCCAGGTAAACCACTTTTCGCCCAAACCGGGCGGCACAGA
CACCATGCTAGCCGACGTATCCTTCCGTATGCCCAGACCGCGCGCCCCGG
GCTTCTGGGAAAATCACATCACAGAGGAATTGCTAGGGGACGGGTCAGGC
GCACACCGATCCATGCACTCGGTAGGACGCATGTTCGGGCTAACGTTCTG
GGAGAACTGGTACGTGATCGGCGAGAACGCGGCCGAGGACTCGGAGTTGC
CGGCCTACAAGTTCGTCTACTACACGGGCCACACTCTGCAGGGCAACTAC
GAGGGCGCCTTTGTCTACGCCCGCACGCCCGAGCTACCGCCCGAACTTTT
GTCATCTATCTCCCGGGTAGCGCGTGCCAATGGACTCGATCCCACCAAGT
TTTGCAAGATCCGCAACGCCTGCTTCCGCCCGGATGCGCCACCCCTCGAG
GCGGGCACATCTTCCCCCGTGGATGGCATGAAGCTTACCACCGTGGCCCC
CACCTCCTTCGCAGGGATAAAGGGTTGGCTGAAAACCCGCGCTTTATGGC
TGCCCCGGCAGGTTTCGGAACTGAAAGCGGCCATGACGCGGGAACTGGAC
GACTGGTTCGAGGACCCGACCAAGACCAGCGACTGGCTGATGAGGCAGCA
AGAGCGTATGATAATGGTTGCGGATGAGCCGCGCGCGGGCGCCGTGCAAG
TCATCGCCAGTCGTACCTCAGAAGACGGTAACGGCGGCGACAAAAGTGGC
GACAATACCGTTTCAACTCCTCTTCCTGCTCATTCTGGTGCGATTGCCGC
AGCTTCCTCGACGGTCCAGTTGGATAGTGGGAAAGGCAGTAGAAGCACTA
GCGGTGGTGGACTGCCACCAGTATTTGTGGACTATTTGGCCAAAAAGAGT
CCTTAGGTAGATTAGGAGGTTGTTGCATGTTTTGATGTCCCCACAACATG
CGTTGTTCCTCCCTTGTTTCTTGTTTTCATTGTTTTTATTAGGACACAGC
AATGCATGTAACGACAAAGGATCTGATTCATGCTCTGCCTGAATGCAAAC
AGAAAAGTAGCGAGTAGATTTATCTCACGGTCGTATGAAAAAATAAAACG
AGATTTAGATAGGGCTATCTTGACGGCTTGATAAGTAACATGGACAGACA
CATCCATAGACCTTTTGAACCA

Coding sequence (CDS) from alignment at scaffold_12:141436..143907+

>mRNA_4966 ID=mRNA_4966|Name=jgi.p|Nanoce1779_2|590958|organism=Nannochloropsis oceanica|type=CDS|length=3654bp|location=Sequence derived from alignment at scaffold_12:141436..143907+ (Nannochloropsis oceanica)
ATGCCGTTCCCTTGTCCTGTCCCACGGCGCAACAACGAAGAGAGGATGGA
CGCTTTATTCAAGGCACAGCGAGGAAGGAAAGAGTCGGAGCGCCCACGGC
GGGGGAGAAGAAGAGGCAGTCCGACAGGGACAAGCACGAAAAGGGTGCTT
TTGGGCAGCGCGGTGTTCCATGTTTTGTGCCTCAGGGCATCCGGCATGCC
AACCGCATTTGGTTTGCCAATCTCACTTGCGACCTTCGGAAGGCCCGACG
ACGCGGCCAGGATGTCGGCAACCAGGGAGAGAGGGACTGTATATTGGAGT
ACAACCGAACGTACGAGTGCCAACGAGCGTGATGCGTACGACTTCGAGAG
CGACGACCAGAGGACAATAGAAAGTCTGTCGCGATCATCGCAACGACCAG
CATCAAGGATCGGGCAGCTATTCTCGCGACTTTTACCCAGGGCGGCCCTG
ATAGTGCTTGGCGGGGGTTGGCTTGGGAGTGGCAGCGGGAGAGGGGGTTT
TCTGAACGATGGAGGGTGGCCGTATGCGGCTCGTGCGGAGGATGAATTGG
CGCAATACGCGAAGGAAGGCAACAAAGTGGGGGTCGACGCAAAGTGCTTC
GTGCAAAAGTGCTCACTGTCCACGCACGACTGCCTCAATAACCCGGACTG
TCTCAAGGGCCTGTCCTGCCTCTCCAAATGCAAGGGCGAGGGAACATGCT
CCACTGCATGCTTCGCCAAGTACGGCAATGGAGTGCTGGATAACTTCTTG
CACTGTGCCGTGGAGCAACAGGACTGCGTACACGTGCCGCGCGACCGGTC
GCGGGCCACCTGGACGGACCCGGACACGGTGGGGCTGGACAAACAGATCT
CGCCCTCCTTCCAGATCTCCTCGCTGGAGGGCCGATGGTACAAAGTGATG
GGCATGGATGCGCGCTATGACTGCTTTGACTGCCAGGTAAACCACTTTTC
GCCCAAACCGGGCGGCACAGACACCATGCTAGCCGACGTATCCTTCCGTA
TGCCCAGACCGCGCGCCCCGGGCTTCTGGGAAAATCACATCACAGAGGAA
TTGCTAGGGGACGGGTCAGGCGCACACCGATCCATGCACTCGGTAGGACG
CATGTTCGGGCTAACGTTCTGGGAGAACTGGTACGTGATCGGCGAGAACG
CGGCCGAGGACTCGGAGTTGCCGGCCTACAAGTTCGTCTACTACACGGGC
CACACTCTGCAGGGCAACTACGAGGGCGCCTTTGTCTACGCCCGCACGCC
CGAGCTACCGCCCGAACTTTTGTCATCTATCTCCCGGGTAGCGCGTGCCA
ATGGACTCGATCCCACCAAGTTTTGCAAGATCCGCAACGCCTGCTTCCGC
CCGGATGCGCCACCCCTCGAGGCGGGCACATCTTCCCCCGTGGATGGCAT
GAAGCTTACCACCGTGGCCCCCACCTCCTTCGCAGGGATAAAGGGTTGGC
TGAAAACCCGCGCTTTATGGCTGCCCCGGCAGGTTTCGGAACTGAAAGCG
GCCATGACGCGGGAACTGGACGACTGGTTCGAGGACCCGACCAAGACCAG
CGACTGGCTGATGAGGCAGCAAGAGCGTATGATAATGGTTGCGGATGAGC
CGCGCGCGGGCGCCGTGCAAGTCATCGCCAGTCGTACCTCAGAAGACGGT
AACGGCGGCGACAAAAGTGGCGACAATACCGTTTCAACTCCTCTTCCTGC
TCATTCTGGTGCGATTGCCGCAGCTTCCTCGACGGTCCAGTTGGATAGTG
GGAAAGGCAGTAGAAGCACTAGCGGTGGTGGACTGCCACCAGTATTTGTG
GACTATTTGGCCAAAAAGAGTCCTTAGATGCCGTTCCCTTGTCCTGTCCC
ACGGCGCAACAACGAAGAGAGGATGGACGCTTTATTCAAGGCACAGCGAG
GAAGGAAAGAGTCGGAGCGCCCACGGCGGGGGAGAAGAAGAGGCAGTCCG
ACAGGGACAAGCACGAAAAGGGTGCTTTTGGGCAGCGCGGTGTTCCATGT
TTTGTGCCTCAGGGCATCCGGCATGCCAACCGCATTTGGTTTGCCAATCT
CACTTGCGACCTTCGGAAGGCCCGACGACGCGGCCAGGATGTCGGCAACC
AGGGAGAGAGGGACTGTATATTGGAGTACAACCGAACGTACGAGTGCCAA
CGAGCGTGATGCGTACGACTTCGAGAGCGACGACCAGAGGACAATAGAAA
GTCTGTCGCGATCATCGCAACGACCAGCATCAAGGATCGGGCAGCTATTC
TCGCGACTTTTACCCAGGGCGGCCCTGATAGTGCTTGGCGGGGGTTGGCT
TGGGAGTGGCAGCGGGAGAGGGGGTTTTCTGAACGATGGAGGGTGGCCGT
ATGCGGCTCGTGCGGAGGATGAATTGGCGCAATACGCGAAGGAAGGCAAC
AAAGTGGGGGTCGACGCAAAGTGCTTCGTGCAAAAGTGCTCACTGTCCAC
GCACGACTGCCTCAATAACCCGGACTGTCTCAAGGGCCTGTCCTGCCTCT
CCAAATGCAAGGGCGAGGGAACATGCTCCACTGCATGCTTCGCCAAGTAC
GGCAATGGAGTGCTGGATAACTTCTTGCACTGTGCCGTGGAGCAACAGGA
CTGCGTACACGTGCCGCGCGACCGGTCGCGGGCCACCTGGACGGACCCGG
ACACGGTGGGGCTGGACAAACAGATCTCGCCCTCCTTCCAGATCTCCTCG
CTGGAGGGCCGATGGTACAAAGTGATGGGCATGGATGCGCGCTATGACTG
CTTTGACTGCCAGGTAAACCACTTTTCGCCCAAACCGGGCGGCACAGACA
CCATGCTAGCCGACGTATCCTTCCGTATGCCCAGACCGCGCGCCCCGGGC
TTCTGGGAAAATCACATCACAGAGGAATTGCTAGGGGACGGGTCAGGCGC
ACACCGATCCATGCACTCGGTAGGACGCATGTTCGGGCTAACGTTCTGGG
AGAACTGGTACGTGATCGGCGAGAACGCGGCCGAGGACTCGGAGTTGCCG
GCCTACAAGTTCGTCTACTACACGGGCCACACTCTGCAGGGCAACTACGA
GGGCGCCTTTGTCTACGCCCGCACGCCCGAGCTACCGCCCGAACTTTTGT
CATCTATCTCCCGGGTAGCGCGTGCCAATGGACTCGATCCCACCAAGTTT
TGCAAGATCCGCAACGCCTGCTTCCGCCCGGATGCGCCACCCCTCGAGGC
GGGCACATCTTCCCCCGTGGATGGCATGAAGCTTACCACCGTGGCCCCCA
CCTCCTTCGCAGGGATAAAGGGTTGGCTGAAAACCCGCGCTTTATGGCTG
CCCCGGCAGGTTTCGGAACTGAAAGCGGCCATGACGCGGGAACTGGACGA
CTGGTTCGAGGACCCGACCAAGACCAGCGACTGGCTGATGAGGCAGCAAG
AGCGTATGATAATGGTTGCGGATGAGCCGCGCGCGGGCGCCGTGCAAGTC
ATCGCCAGTCGTACCTCAGAAGACGGTAACGGCGGCGACAAAAGTGGCGA
CAATACCGTTTCAACTCCTCTTCCTGCTCATTCTGGTGCGATTGCCGCAG
CTTCCTCGACGGTCCAGTTGGATAGTGGGAAAGGCAGTAGAAGCACTAGC
GGTGGTGGACTGCCACCAGTATTTGTGGACTATTTGGCCAAAAAGAGTCC
TTAG

Synonyms

Publications