jgi.p|Nanoce1779_2|590948, mRNA_4965 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590948
Unique NamemRNA_4965
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1007
Alignment locationscaffold_12:138956..140222 -

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Properties
Property NameValue
TranscriptId591034
TrackFilteredModels2
ProteinId590948
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:138956..140222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590948gene_4965Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590948mRNA_4965-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4965CDS_4965Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4965 ID=mRNA_4965|Name=jgi.p|Nanoce1779_2|590948|organism=Nannochloropsis oceanica|type=mRNA|length=1007bp
GACCCCTCGAGTACTGCTGAGGGAGGGGATTGTGTCATCAGCTTCTGCAT
GCCTGTGTGTGTAGTAGAGCAGCAGCAGCAGCAGCAGCATTACAGCTCGC
CCACAAACGCCGCAAATTTCTAAGTCTAAGCCCAGATCCATGACGACTGC
AGTCTTATGGCAACAAGATCGGCGTCGTCATTGTCTTTACGCATCCTCAT
TGTCTCGCTCCATTCTCTCCCACAGGCCGAAATGAGCCCCACACCGCCAG
TACCACCAACTTTACCACAAGCATGCCAAAGGCCAAGGCCGCCACCACCC
GCTCTCGCGCCAGCACCAAGAAAGAGATTCGTGGGAAGGAGGGGAAAGGG
AGTATGGAAGGACGGAGGAGAAACCTCCGAAGCATCCCCCTTACGTCTAA
CGTGGTGCGGTGCTCGCGAGGGCTACAGAAAGAGAGGTCGAGCGAGAAAC
TGGAGGAAAGGAGATACAAGTCTAAATGATCTGGTTATTTGTCTGTCTTG
ACGTAAGGAGGAGAGTTAGTGTGGCTCCCTTCCTAGGCCAGGGGTGTAAC
TTAACCCCCATCCCGCAACCAACCAACAGACAAAGCTGCTGGAGAGCCCG
CCCCCGATGGGAGCGTAAGGAGGCCGACTCGGTCTCGACTGAGATACGCT
TCCCCCGCTACTTTTGTTGTGGGAAAGAACACTATCCCCTCCATCAAGGG
CGAATATTACGATGAGGAAAAAGAGGAGCACGGAGGAAGGGGAGTAGGTG
GGGTTGGGAAGGGAGTGGTATGATGCACTCGCCGACCCCTTCCTCGGTCG
CTTCCTCGACAATTTCAGGGAGAAAGGGAGTGAGGAACATAGCTGCAGCT
GCTGCTGCTGCTCTTCGTGATACAATTAGCAGGATGGGGAGCCCTCCCAC
CCCTCTTCCTCTAGTGCTGTCTCCCCTTCCTCCCCTTCGTCTTCCCTTGC
ATCCTCGACCTCCTCCTGGCGTTCCTTGTCGTTCATGCCCTCGAGGAAGG
GAATTTT
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protein sequence of jgi.p|Nanoce1779_2|590948

>mRNA_4965-protein ID=mRNA_4965-protein|Name=jgi.p|Nanoce1779_2|590948|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MATRSASSLSLRILIVSLHSLPQAEMSPTPPVPPTLPQACQRPRPPPPAL
APAPRKRFVGRRGKGVWKDGGETSEASPLRLTWCGAREGYRKRGRARNWR
KGDTSLNDLVICLS*
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mRNA from alignment at scaffold_12:138956..140222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4965 ID=mRNA_4965|Name=jgi.p|Nanoce1779_2|590948|organism=Nannochloropsis oceanica|type=mRNA|length=1267bp|location=Sequence derived from alignment at scaffold_12:138956..140222- (Nannochloropsis oceanica)
GACCCCTCGAGTACTGCTGAGGGAGGGGATTGTGTCATCAGCTTCTGCAT
GCCTGTGTGTGTAGTAGAGCAGCAGCAGCAGCAGCAGCATTACAGCTCGC
CCACAAACGCCGCAAATTTCTAAGTCTAAGCCCAGATCCATGACGACTGC
AGTCTTATGGCAACAAGATCGGCGTCGTCATTGTCTTTACGCATCCTCAT
TGTCTCGCTCCATTCTCTCCCACAGGCCGAAATGAGCCCCACACCGCCAG
TACCACCAACTTTACCACAAGCATGCCAAAGGCCAAGGCCGCCACCACCC
GCTCTCGCGCCAGCACCAAGAAAGAGATTCGTGGGAAGGAGGGGAAAGGG
AGTATGGAAGGACGGAGGAGAAACCTCCGAAGCATCCCCCTTACGTCTAA
CGTGGTGCGGTGCTCGCGAGGGCTACAGAAAGAGAGGTCGAGCGAGAAAC
TGGAGGAAAGGAGATACAAGTCTAAATGATCTGGTTATTTGTCTGTCTTG
ACGTAAGGAGGAGAGTTAGTGTGGCTCCCTTCCTAGGCCAGGGGTGTAAC
TTAACCCCCATCCCGCAACCAACCAACAGACAAAGCTGCTGGAGAGCCCG
CCCCCGATGGGAGCGTAAGGAGGCCGACTCGGTCTCGAGTAAGAATGAAC
AAGAGCCACTCGTGCGTCTGTATAGTGCGATGTTGGGTGCATCTGTGTCT
GTTTCAGTGTCTCTATCTCTCATTTATCTTCTTACTTCTTTGTGTGTGCC
TATCATCTGAACATGGGCCTCTGCTGGTGATACACTATTGCTTCTCTTCT
CAATTCGGTGCTCCTGCTCCATAATATCTGCACTGTCGGCACCCTATGTC
CAACTCTCCCTCCCTTCCTCCCTCCCTCCCTCCACCACTTACACATAGCT
GAGATACGCTTCCCCCGCTACTTTTGTTGTGGGAAAGAACACTATCCCCT
CCATCAAGGGCGAATATTACGATGAGGAAAAAGAGGAGCACGGAGGAAGG
GGAGTAGGTGGGGTTGGGAAGGGAGTGGTATGATGCACTCGCCGACCCCT
TCCTCGGTCGCTTCCTCGACAATTTCAGGGAGAAAGGGAGTGAGGAACAT
AGCTGCAGCTGCTGCTGCTGCTCTTCGTGATACAATTAGCAGGATGGGGA
GCCCTCCCACCCCTCTTCCTCTAGTGCTGTCTCCCCTTCCTCCCCTTCGT
CTTCCCTTGCATCCTCGACCTCCTCCTGGCGTTCCTTGTCGTTCATGCCC
TCGAGGAAGGGAATTTT
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Coding sequence (CDS) from alignment at scaffold_12:138956..140222-

>mRNA_4965 ID=mRNA_4965|Name=jgi.p|Nanoce1779_2|590948|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_12:138956..140222- (Nannochloropsis oceanica)
ATGGCAACAAGATCGGCGTCGTCATTGTCTTTACGCATCCTCATTGTCTC
GCTCCATTCTCTCCCACAGGCCGAAATGAGCCCCACACCGCCAGTACCAC
CAACTTTACCACAAGCATGCCAAAGGCCAAGGCCGCCACCACCCGCTCTC
GCGCCAGCACCAAGAAAGAGATTCGTGGGAAGGAGGGGAAAGGGAGTATG
GAAGGACGGAGGAGAAACCTCCGAAGCATCCCCCTTACGTCTAACGTGGT
GCGGTGCTCGCGAGGGCTACAGAAAGAGAGGTCGAGCGAGAAACTGGAGG
AAAGGAGATACAAGTCTAAATGATCTGGTTATTTGTCTGTCTTGA
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Synonyms
Publications