jgi.p|Nanoce1779_2|566247, mRNA_4964 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566247
Unique NamemRNA_4964
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length303
Alignment locationscaffold_12:138785..139087 +

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Properties
Property NameValue
TranscriptId566333
TrackFilteredModels2
ProteinId566247
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:138785..139087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566247gene_4964Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566247mRNA_4964-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4964CDS_4964Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4964 ID=mRNA_4964|Name=jgi.p|Nanoce1779_2|566247|organism=Nannochloropsis oceanica|type=mRNA|length=303bp
ATGACCCCGCAAGGAGAGGACGGTGGCCCCGCCGACTCGACAACGACGAG
AACGACGACGCCTAAGGCGATGGCCACGTTGGCTGGAGCAGCAGGAACAG
CAGCCACATCTGCGTCAGACCGTCCTAGCAGTCACCAAGAGGAAGAAGAA
GAAGAAGGAAAAGAAGAAGAGAAAATTCCCTTCCTCGAGGGCATGAACGA
CAAGGAACGCCAGGAGGAGGTCGAGGATGCAAGGGAAGACGAAGGGGAGG
AAGGGGAGACAGCACTAGAGGAAGAGGGGTGGGAGGGCTCCCCATCCTGC
TAA
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protein sequence of jgi.p|Nanoce1779_2|566247

>mRNA_4964-protein ID=mRNA_4964-protein|Name=jgi.p|Nanoce1779_2|566247|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MTPQGEDGGPADSTTTRTTTPKAMATLAGAAGTAATSASDRPSSHQEEEE
EEGKEEEKIPFLEGMNDKERQEEVEDAREDEGEEGETALEEEGWEGSPSC
*
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mRNA from alignment at scaffold_12:138785..139087+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4964 ID=mRNA_4964|Name=jgi.p|Nanoce1779_2|566247|organism=Nannochloropsis oceanica|type=mRNA|length=303bp|location=Sequence derived from alignment at scaffold_12:138785..139087+ (Nannochloropsis oceanica)
ATGACCCCGCAAGGAGAGGACGGTGGCCCCGCCGACTCGACAACGACGAG
AACGACGACGCCTAAGGCGATGGCCACGTTGGCTGGAGCAGCAGGAACAG
CAGCCACATCTGCGTCAGACCGTCCTAGCAGTCACCAAGAGGAAGAAGAA
GAAGAAGGAAAAGAAGAAGAGAAAATTCCCTTCCTCGAGGGCATGAACGA
CAAGGAACGCCAGGAGGAGGTCGAGGATGCAAGGGAAGACGAAGGGGAGG
AAGGGGAGACAGCACTAGAGGAAGAGGGGTGGGAGGGCTCCCCATCCTGC
TAA
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Coding sequence (CDS) from alignment at scaffold_12:138785..139087+

>mRNA_4964 ID=mRNA_4964|Name=jgi.p|Nanoce1779_2|566247|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_12:138785..139087+ (Nannochloropsis oceanica)
ATGACCCCGCAAGGAGAGGACGGTGGCCCCGCCGACTCGACAACGACGAG
AACGACGACGCCTAAGGCGATGGCCACGTTGGCTGGAGCAGCAGGAACAG
CAGCCACATCTGCGTCAGACCGTCCTAGCAGTCACCAAGAGGAAGAAGAA
GAAGAAGGAAAAGAAGAAGAGAAAATTCCCTTCCTCGAGGGCATGAACGA
CAAGGAACGCCAGGAGGAGGTCGAGGATGCAAGGGAAGACGAAGGGGAGG
AAGGGGAGACAGCACTAGAGGAAGAGGGGTGGGAGGGCTCCCCATCCTGC
TAA
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Synonyms
Publications