jgi.p|Nanoce1779_2|590943, mRNA_4963 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590943
Unique NamemRNA_4963
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1547
Alignment locationscaffold_12:134765..136599 -

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Properties
Property NameValue
TranscriptId591029
TrackFilteredModels2
ProteinId590943
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:134765..136599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590943gene_4963Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590943mRNA_4963-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4963CDS_4963Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4963 ID=mRNA_4963|Name=jgi.p|Nanoce1779_2|590943|organism=Nannochloropsis oceanica|type=mRNA|length=1547bp
AGATCTACGTGCTCTTCTTTTGCATAATTCACTTGGAAAGCCGGAGGTCG
GGTGTCCGGCTCGGGGCGAGAAGCACACATCATAATGACGCTGTCAGTTG
CTCAAGCGGACAAGATGCTCAAACAGCAAATGGAGGAGCGCATCAGGGCT
CCGGGTGGCTCTAGTCCGCGGCTGCCGCGGCAGGTCACCGTATGCGGGGG
GGGGAACGGCGCTCATGTGTGTGCAGGGTATTTCGCCTGGAAGGGCATCA
AGGTGAATGTCTTGACACGAAGACCGCAAGACTGGGCGTCACAAATCAAC
GTGAGCACCGAGGGCTCTTCATGGGAGGAGAAGGGCCCGTTTGTAGGTCC
ACTGCAGCGGGTAAGTGACGATGCCGCTGACGTCGTTTCCGGCTCCGAAT
ACATTATCATTGCCGCGCCTGCGAACGCCCACCCGGCCTTACTGGCCAAG
ATAGCACCGCACCTAGACTTTGGGACAACATTGGGAGCCTTGTTTGCGCA
AGGCGGATTTGACTGGGCAGTGAAGCATGCGTTCGGGCCTGAGCGATTCA
AGCGCATAGGCGTCATGTTCGGCCTGCAAAACATCCCGTGGATATGCAAA
GCTACCAAGTACGGTCACTCTGCTCGCATTCTTGGTCCCAAAAAGCAGTT
GTGGGTGGCTACCTATCCTGTTGAGGCTCGTGAGACCACAGCAGGGGAAT
TGGAGGGCATGTTTGACATACCCTGCGAGACGCTCCCGAACTTTTTGAAC
CTGACCCTGACCCCCTCCAACCAAATTATCCATCCGGCACGGTATCACGG
CGTCTTTCGGGATTGGGATGGCCAGCGGACTTATACACGGGCAGAGCTAG
AGGCCCGAGGCGGCCTGACACTCTACAAAGGCATGGACGAGTATTCGGCC
GAGTGGCTTGCCGTGCTAGACAACGAGCTGCAGCAGATAAAGCTGGCACT
CTTACAGCAGTTTCCGCAACTTGACCTGTCTTTCATCGTACCTATCGGGG
AGCGCATTATCAAGCAGTACGGTGACGACGTCACCGACACATCATCGCTT
CGGAGAATCTTCAGCAGTAATAGAGGTTACGCTCCTTGCCTCACACCGCT
AAAAGAATCCAGTCCTGGGCGATTTCAACCACTGGTCAACTCACGGCTAT
TTTGGGAGGACATCCCTTACGGTTTGGTTATTCTCAAAAACCTTGTCGAG
CTTCTGGGCAACTTTCCTACTCCAGCCATCGATTTTATGATCCGTTGGCA
CCAGAAATTTATGGGCAAGGAATACTTGCTTGCCGACAACCAGCTGAATC
CTCGTTTACTTAATGAGACTGGGGCTCCAAATAAGTACGGCATCCATTGC
GTGGAAGAGCTGGTGGAGACATGTTTGCCACGTGAACTTTTACATTACCG
CCATCCCCGGTCGCGTATTTAGAATGCTGTGTATTTGGGATAAGGCACCA
ATAGGATAAAATGTACGGCGTACTCATTTACTTTCCTTAAAAGAAAGAAA
GGGAAAAAAGAATAAATGATATCACGATGGTATTATTATGATTGCAC
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protein sequence of jgi.p|Nanoce1779_2|590943

>mRNA_4963-protein ID=mRNA_4963-protein|Name=jgi.p|Nanoce1779_2|590943|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MTLSVAQADKMLKQQMEERIRAPGGSSPRLPRQVTVCGGGNGAHVCAGYF
AWKGIKVNVLTRRPQDWASQINVSTEGSSWEEKGPFVGPLQRVSDDAADV
VSGSEYIIIAAPANAHPALLAKIAPHLDFGTTLGALFAQGGFDWAVKHAF
GPERFKRIGVMFGLQNIPWICKATKYGHSARILGPKKQLWVATYPVEARE
TTAGELEGMFDIPCETLPNFLNLTLTPSNQIIHPARYHGVFRDWDGQRTY
TRAELEARGGLTLYKGMDEYSAEWLAVLDNELQQIKLALLQQFPQLDLSF
IVPIGERIIKQYGDDVTDTSSLRRIFSSNRGYAPCLTPLKESSPGRFQPL
VNSRLFWEDIPYGLVILKNLVELLGNFPTPAIDFMIRWHQKFMGKEYLLA
DNQLNPRLLNETGAPNKYGIHCVEELVETCLPRELLHYRHPRSRI*
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mRNA from alignment at scaffold_12:134765..136599-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4963 ID=mRNA_4963|Name=jgi.p|Nanoce1779_2|590943|organism=Nannochloropsis oceanica|type=mRNA|length=1835bp|location=Sequence derived from alignment at scaffold_12:134765..136599- (Nannochloropsis oceanica)
AGATCTACGTGCTCTTCTTTTGCATAATTCACTTGGAAAGCCGGAGGTCG
GGTGTCCGGCTCGGGGCGAGAAGCACACATCATAATGACGCTGTCAGTTG
CTCAAGCGGACAAGGTACGTCTCTATTTTTCTCTTGGTCGTCTAAAGAGT
TCGCCACAGGTTGAATGCGCCTGGCTTTCTCTCCCTATTTGTTGCTAGCG
GAGCTCATCGATCTGCCATTGTCCCCATGTTCAATTTCATCTTTTGAGTA
GCCATTGATCAGCCAATTGTGAGAAAGTCTTCAATCCCTGCGCCACACAG
CTCCGCTTACATCTTTACCAGTCTTTTGTTTGACGCCTCGTCTCGTCGCT
AAATCCTCATTCATTTCCCTTCACATGCCTTTTCTTTTTTTACAACGCTT
AGATGCTCAAACAGCAAATGGAGGAGCGCATCAGGGCTCCGGGTGGCTCT
AGTCCGCGGCTGCCGCGGCAGGTCACCGTATGCGGGGGGGGGAACGGCGC
TCATGTGTGTGCAGGGTATTTCGCCTGGAAGGGCATCAAGGTGAATGTCT
TGACACGAAGACCGCAAGACTGGGCGTCACAAATCAACGTGAGCACCGAG
GGCTCTTCATGGGAGGAGAAGGGCCCGTTTGTAGGTCCACTGCAGCGGGT
AAGTGACGATGCCGCTGACGTCGTTTCCGGCTCCGAATACATTATCATTG
CCGCGCCTGCGAACGCCCACCCGGCCTTACTGGCCAAGATAGCACCGCAC
CTAGACTTTGGGACAACATTGGGAGCCTTGTTTGCGCAAGGCGGATTTGA
CTGGGCAGTGAAGCATGCGTTCGGGCCTGAGCGATTCAAGCGCATAGGCG
TCATGTTCGGCCTGCAAAACATCCCGTGGATATGCAAAGCTACCAAGTAC
GGTCACTCTGCTCGCATTCTTGGTCCCAAAAAGCAGTTGTGGGTGGCTAC
CTATCCTGTTGAGGCTCGTGAGACCACAGCAGGGGAATTGGAGGGCATGT
TTGACATACCCTGCGAGACGCTCCCGAACTTTTTGAACCTGACCCTGACC
CCCTCCAACCAAATTATCCATCCGGCACGGTATCACGGCGTCTTTCGGGA
TTGGGATGGCCAGCGGACTTATACACGGGCAGAGCTAGAGGCCCGAGGCG
GCCTGACACTCTACAAAGGCATGGACGAGTATTCGGCCGAGTGGCTTGCC
GTGCTAGACAACGAGCTGCAGCAGATAAAGCTGGCACTCTTACAGCAGTT
TCCGCAACTTGACCTGTCTTTCATCGTACCTATCGGGGAGCGCATTATCA
AGCAGTACGGTGACGACGTCACCGACACATCATCGCTTCGGAGAATCTTC
AGCAGTAATAGAGGTTACGCTCCTTGCCTCACACCGCTAAAAGAATCCAG
TCCTGGGCGATTTCAACCACTGGTCAACTCACGGCTATTTTGGGAGGACA
TCCCTTACGGTTTGGTTATTCTCAAAAACCTTGTCGAGCTTCTGGGCAAC
TTTCCTACTCCAGCCATCGATTTTATGATCCGTTGGCACCAGAAATTTAT
GGGCAAGGAATACTTGCTTGCCGACAACCAGCTGAATCCTCGTTTACTTA
ATGAGACTGGGGCTCCAAATAAGTACGGCATCCATTGCGTGGAAGAGCTG
GTGGAGACATGTTTGCCACGTGAACTTTTACATTACCGCCATCCCCGGTC
GCGTATTTAGAATGCTGTGTATTTGGGATAAGGCACCAATAGGATAAAAT
GTACGGCGTACTCATTTACTTTCCTTAAAAGAAAGAAAGGGAAAAAAGAA
TAAATGATATCACGATGGTATTATTATGATTGCAC
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Coding sequence (CDS) from alignment at scaffold_12:134765..136599-

>mRNA_4963 ID=mRNA_4963|Name=jgi.p|Nanoce1779_2|590943|organism=Nannochloropsis oceanica|type=CDS|length=2676bp|location=Sequence derived from alignment at scaffold_12:134765..136599- (Nannochloropsis oceanica)
ATGCTCAAACAGCAAATGGAGGAGCGCATCAGGGCTCCGGGTGGCTCTAG
TCCGCGGCTGCCGCGGCAGGTCACCGTATGCGGGGGGGGGAACGGCGCTC
ATGTGTGTGCAGGGTATTTCGCCTGGAAGGGCATCAAGGTGAATGTCTTG
ACACGAAGACCGCAAGACTGGGCGTCACAAATCAACGTGAGCACCGAGGG
CTCTTCATGGGAGGAGAAGGGCCCGTTTGTAGGTCCACTGCAGCGGGTAA
GTGACGATGCCGCTGACGTCGTTTCCGGCTCCGAATACATTATCATTGCC
GCGCCTGCGAACGCCCACCCGGCCTTACTGGCCAAGATAGCACCGCACCT
AGACTTTGGGACAACATTGGGAGCCTTGTTTGCGCAAGGCGGATTTGACT
GGGCAGTGAAGCATGCGTTCGGGCCTGAGCGATTCAAGCGCATAGGCGTC
ATGTTCGGCCTGCAAAACATCCCGTGGATATGCAAAGCTACCAAGTACGG
TCACTCTGCTCGCATTCTTGGTCCCAAAAAGCAGTTGTGGGTGGCTACCT
ATCCTGTTGAGGCTCGTGAGACCACAGCAGGGGAATTGGAGGGCATGTTT
GACATACCCTGCGAGACGCTCCCGAACTTTTTGAACCTGACCCTGACCCC
CTCCAACCAAATTATCCATCCGGCACGGTATCACGGCGTCTTTCGGGATT
GGGATGGCCAGCGGACTTATACACGGGCAGAGCTAGAGGCCCGAGGCGGC
CTGACACTCTACAAAGGCATGGACGAGTATTCGGCCGAGTGGCTTGCCGT
GCTAGACAACGAGCTGCAGCAGATAAAGCTGGCACTCTTACAGCAGTTTC
CGCAACTTGACCTGTCTTTCATCGTACCTATCGGGGAGCGCATTATCAAG
CAGTACGGTGACGACGTCACCGACACATCATCGCTTCGGAGAATCTTCAG
CAGTAATAGAGGTTACGCTCCTTGCCTCACACCGCTAAAAGAATCCAGTC
CTGGGCGATTTCAACCACTGGTCAACTCACGGCTATTTTGGGAGGACATC
CCTTACGGTTTGGTTATTCTCAAAAACCTTGTCGAGCTTCTGGGCAACTT
TCCTACTCCAGCCATCGATTTTATGATCCGTTGGCACCAGAAATTTATGG
GCAAGGAATACTTGCTTGCCGACAACCAGCTGAATCCTCGTTTACTTAAT
GAGACTGGGGCTCCAAATAAGTACGGCATCCATTGCGTGGAAGAGCTGGT
GGAGACATGTTTGCCACGTGAACTTTTACATTACCGCCATCCCCGGTCGC
GTATTTAGATGACGCTGTCAGTTGCTCAAGCGGACAAGATGCTCAAACAG
CAAATGGAGGAGCGCATCAGGGCTCCGGGTGGCTCTAGTCCGCGGCTGCC
GCGGCAGGTCACCGTATGCGGGGGGGGGAACGGCGCTCATGTGTGTGCAG
GGTATTTCGCCTGGAAGGGCATCAAGGTGAATGTCTTGACACGAAGACCG
CAAGACTGGGCGTCACAAATCAACGTGAGCACCGAGGGCTCTTCATGGGA
GGAGAAGGGCCCGTTTGTAGGTCCACTGCAGCGGGTAAGTGACGATGCCG
CTGACGTCGTTTCCGGCTCCGAATACATTATCATTGCCGCGCCTGCGAAC
GCCCACCCGGCCTTACTGGCCAAGATAGCACCGCACCTAGACTTTGGGAC
AACATTGGGAGCCTTGTTTGCGCAAGGCGGATTTGACTGGGCAGTGAAGC
ATGCGTTCGGGCCTGAGCGATTCAAGCGCATAGGCGTCATGTTCGGCCTG
CAAAACATCCCGTGGATATGCAAAGCTACCAAGTACGGTCACTCTGCTCG
CATTCTTGGTCCCAAAAAGCAGTTGTGGGTGGCTACCTATCCTGTTGAGG
CTCGTGAGACCACAGCAGGGGAATTGGAGGGCATGTTTGACATACCCTGC
GAGACGCTCCCGAACTTTTTGAACCTGACCCTGACCCCCTCCAACCAAAT
TATCCATCCGGCACGGTATCACGGCGTCTTTCGGGATTGGGATGGCCAGC
GGACTTATACACGGGCAGAGCTAGAGGCCCGAGGCGGCCTGACACTCTAC
AAAGGCATGGACGAGTATTCGGCCGAGTGGCTTGCCGTGCTAGACAACGA
GCTGCAGCAGATAAAGCTGGCACTCTTACAGCAGTTTCCGCAACTTGACC
TGTCTTTCATCGTACCTATCGGGGAGCGCATTATCAAGCAGTACGGTGAC
GACGTCACCGACACATCATCGCTTCGGAGAATCTTCAGCAGTAATAGAGG
TTACGCTCCTTGCCTCACACCGCTAAAAGAATCCAGTCCTGGGCGATTTC
AACCACTGGTCAACTCACGGCTATTTTGGGAGGACATCCCTTACGGTTTG
GTTATTCTCAAAAACCTTGTCGAGCTTCTGGGCAACTTTCCTACTCCAGC
CATCGATTTTATGATCCGTTGGCACCAGAAATTTATGGGCAAGGAATACT
TGCTTGCCGACAACCAGCTGAATCCTCGTTTACTTAATGAGACTGGGGCT
CCAAATAAGTACGGCATCCATTGCGTGGAAGAGCTGGTGGAGACATGTTT
GCCACGTGAACTTTTACATTACCGCCATCCCCGGTCGCGTATTTAGATGA
CGCTGTCAGTTGCTCAAGCGGACAAG
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Synonyms
Publications