jgi.p|Nanoce1779_2|590942, mRNA_4962 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590942
Unique NamemRNA_4962
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1042
Alignment locationscaffold_12:133397..134438 +

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Properties
Property NameValue
TranscriptId591028
TrackFilteredModels2
ProteinId590942
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:133397..134438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590942gene_4962Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590942mRNA_4962-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4962CDS_4962Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4962 ID=mRNA_4962|Name=jgi.p|Nanoce1779_2|590942|organism=Nannochloropsis oceanica|type=mRNA|length=1042bp
GGCAGCAGCATGGCCTTCTCTGCAGCGTTACTAGGTGAGGGAGGAGGATC
CAGAGATTGTTTCTCGGTCGATTGTGCTGCAGGAACTGGAGGGAACGCAG
GCAGTAAACGACAGCAGAGTCTTGAGGGGAGATTTGCATCGCATGTGATG
CAGAGCCCGGTGTTCGGGCTGTCTTTGAGAGATGTAGAGCAGAGAGGCCG
GCTTGTGTCGTTGATTATCCCAGCGGGATTGCGATTGCGGTTGGCTGAAG
ATTGGTATGCCGTAACGAGGAAACGATATTTAACAGGGAACATTCCTCGA
GGACTGACTGGTTGCAGTGGTGATGCTGATGACGGAGAAAGAGGTGTAAA
GCAGCGACGAGAACTGCGCCAACTACCTAACGTGAAGGAGGTAATTTGGG
GATACGAGAAAACTCTCCCTTCATCCTCACCTGTATCTTTGTCCTCGTCT
GATGCGAAGGGATCAAATGGACCTATGGGCGAACGCCTTTGCACCTTGTT
TGATGGGGCGCTAGGCAATTTGCTTCTGTATCGATTTGAAATGAATCAGT
ATCTGGCCCTATTGGAAGGATTAAAAGAATCGAAAAGACCTCCCCACCAA
GTGTGGGGTGCTGAGCACCTTCTCCGTTTGCTTGCTATAACCCCCCGTCT
TTTGGCATCTGAGAGCAGAGGTGGCAGCAAAATCAGCACGGACGATGATA
AGGATTTGGAGGGAGAGTTTTCAAAGGAGGACGGGGAGAGTGCCTCGATA
GTTGAGCAGGCGGAGGAAGCACGATTCTATATACAGGGGCTACTGAATCA
TTTGGCGGAGCACCAGGACACACTATTTGCGCCCTATGAAGAGCAACCTC
GTGCCTTTGGGCTCGATGTGGCGCATAGCATTTGACTTAACTGAGCTTGC
CGAAGTCGTCAATAATGGGACATGATATGAGAATATATTAGGGAGTATTA
AATTGTAATGAAAACACACTTTTTACCAATTAGTTAGACTTCAAGGAACG
GCAAAGAGAAAGCAAGGGAATTCGACAAGCGAACTTATTTGA
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protein sequence of jgi.p|Nanoce1779_2|590942

>mRNA_4962-protein ID=mRNA_4962-protein|Name=jgi.p|Nanoce1779_2|590942|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MAFSAALLGEGGGSRDCFSVDCAAGTGGNAGSKRQQSLEGRFASHVMQSP
VFGLSLRDVEQRGRLVSLIIPAGLRLRLAEDWYAVTRKRYLTGNIPRGLT
GCSGDADDGERGVKQRRELRQLPNVKEVIWGYEKTLPSSSPVSLSSSDAK
GSNGPMGERLCTLFDGALGNLLLYRFEMNQYLALLEGLKESKRPPHQVWG
AEHLLRLLAITPRLLASESRGGSKISTDDDKDLEGEFSKEDGESASIVEQ
AEEARFYIQGLLNHLAEHQDTLFAPYEEQPRAFGLDVAHSI*
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mRNA from alignment at scaffold_12:133397..134438+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4962 ID=mRNA_4962|Name=jgi.p|Nanoce1779_2|590942|organism=Nannochloropsis oceanica|type=mRNA|length=1042bp|location=Sequence derived from alignment at scaffold_12:133397..134438+ (Nannochloropsis oceanica)
GGCAGCAGCATGGCCTTCTCTGCAGCGTTACTAGGTGAGGGAGGAGGATC
CAGAGATTGTTTCTCGGTCGATTGTGCTGCAGGAACTGGAGGGAACGCAG
GCAGTAAACGACAGCAGAGTCTTGAGGGGAGATTTGCATCGCATGTGATG
CAGAGCCCGGTGTTCGGGCTGTCTTTGAGAGATGTAGAGCAGAGAGGCCG
GCTTGTGTCGTTGATTATCCCAGCGGGATTGCGATTGCGGTTGGCTGAAG
ATTGGTATGCCGTAACGAGGAAACGATATTTAACAGGGAACATTCCTCGA
GGACTGACTGGTTGCAGTGGTGATGCTGATGACGGAGAAAGAGGTGTAAA
GCAGCGACGAGAACTGCGCCAACTACCTAACGTGAAGGAGGTAATTTGGG
GATACGAGAAAACTCTCCCTTCATCCTCACCTGTATCTTTGTCCTCGTCT
GATGCGAAGGGATCAAATGGACCTATGGGCGAACGCCTTTGCACCTTGTT
TGATGGGGCGCTAGGCAATTTGCTTCTGTATCGATTTGAAATGAATCAGT
ATCTGGCCCTATTGGAAGGATTAAAAGAATCGAAAAGACCTCCCCACCAA
GTGTGGGGTGCTGAGCACCTTCTCCGTTTGCTTGCTATAACCCCCCGTCT
TTTGGCATCTGAGAGCAGAGGTGGCAGCAAAATCAGCACGGACGATGATA
AGGATTTGGAGGGAGAGTTTTCAAAGGAGGACGGGGAGAGTGCCTCGATA
GTTGAGCAGGCGGAGGAAGCACGATTCTATATACAGGGGCTACTGAATCA
TTTGGCGGAGCACCAGGACACACTATTTGCGCCCTATGAAGAGCAACCTC
GTGCCTTTGGGCTCGATGTGGCGCATAGCATTTGACTTAACTGAGCTTGC
CGAAGTCGTCAATAATGGGACATGATATGAGAATATATTAGGGAGTATTA
AATTGTAATGAAAACACACTTTTTACCAATTAGTTAGACTTCAAGGAACG
GCAAAGAGAAAGCAAGGGAATTCGACAAGCGAACTTATTTGA
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Coding sequence (CDS) from alignment at scaffold_12:133397..134438+

>mRNA_4962 ID=mRNA_4962|Name=jgi.p|Nanoce1779_2|590942|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_12:133397..134438+ (Nannochloropsis oceanica)
ATGGCCTTCTCTGCAGCGTTACTAGGTGAGGGAGGAGGATCCAGAGATTG
TTTCTCGGTCGATTGTGCTGCAGGAACTGGAGGGAACGCAGGCAGTAAAC
GACAGCAGAGTCTTGAGGGGAGATTTGCATCGCATGTGATGCAGAGCCCG
GTGTTCGGGCTGTCTTTGAGAGATGTAGAGCAGAGAGGCCGGCTTGTGTC
GTTGATTATCCCAGCGGGATTGCGATTGCGGTTGGCTGAAGATTGGTATG
CCGTAACGAGGAAACGATATTTAACAGGGAACATTCCTCGAGGACTGACT
GGTTGCAGTGGTGATGCTGATGACGGAGAAAGAGGTGTAAAGCAGCGACG
AGAACTGCGCCAACTACCTAACGTGAAGGAGGTAATTTGGGGATACGAGA
AAACTCTCCCTTCATCCTCACCTGTATCTTTGTCCTCGTCTGATGCGAAG
GGATCAAATGGACCTATGGGCGAACGCCTTTGCACCTTGTTTGATGGGGC
GCTAGGCAATTTGCTTCTGTATCGATTTGAAATGAATCAGTATCTGGCCC
TATTGGAAGGATTAAAAGAATCGAAAAGACCTCCCCACCAAGTGTGGGGT
GCTGAGCACCTTCTCCGTTTGCTTGCTATAACCCCCCGTCTTTTGGCATC
TGAGAGCAGAGGTGGCAGCAAAATCAGCACGGACGATGATAAGGATTTGG
AGGGAGAGTTTTCAAAGGAGGACGGGGAGAGTGCCTCGATAGTTGAGCAG
GCGGAGGAAGCACGATTCTATATACAGGGGCTACTGAATCATTTGGCGGA
GCACCAGGACACACTATTTGCGCCCTATGAAGAGCAACCTCGTGCCTTTG
GGCTCGATGTGGCGCATAGCATTTGA
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Synonyms
Publications