jgi.p|Nanoce1779_2|590939, mRNA_4961 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590939
Unique NamemRNA_4961
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1335
Alignment locationscaffold_12:131943..133277 -

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Properties
Property NameValue
TranscriptId591025
TrackFilteredModels2
ProteinId590939
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:131943..133277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590939gene_4961Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590939mRNA_4961-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4961CDS_4961Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4961 ID=mRNA_4961|Name=jgi.p|Nanoce1779_2|590939|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp
TGTTGTTGTTGTTGTCGTTGTTGTTGTTTTTGACGTTGTTTTCATTGTTG
TTGTTGCTGCTGTTGCTTGTGCTGCTGCTGCTAGCAGACCCGTCAATCGG
CACCACCAACACGATCTGTGAGACGGGATCAATCTTGCGAAAGGCGGATG
GAGCCTCTCTTGAAAACCGGAATGAGATGGAATAACGGCCGGGAGTCTTG
AACTGCGGGACTCGGAAGTAGAAAAGTCCGCCGACAGTAGACTGGCCTGC
CTCGTCGTACAGCACCTACAACGGAATGAGGAAGAAAGGGAAAGAGCGAG
AAGGGGGTGGGGATAATTCCGTGAGTCTAATAGATTGTGGTAATGGTGGC
TGTGGAATTGTAAAACAAATACCTCTTCCGTGTTGATCTCCTCTCCCTTA
CTGTCCAGTTTACTCGCGAGGGCAGCAATGCGATAGCGAAGCGGCACGTC
TTTATAAAGCTCGGGCAGGATCCTTTCGCCCTTGACGCTCATGAGGGCCA
AAGCAAAAAAATTGTCCCCACGGTGAGACCACCCAAAAGCCTTCGTTCGC
ACGTCAGGGTTTTTGATCCGAATGGTCGCGTTGAGCAAGGTGCCCTTTGA
ATGTCGATCCGCCACAAGTTCGAGACGCTTGGGTGCCTCCGACACATAGT
GACTTTTTTTGTATGTACTTTTTTTGGCATTTATGTCATAAGTGGCACTA
GATTGGCCGCCTGCCGAATTATTGCCACCGCCGGCATCTCCCGTATTTGC
GATGCTGGTACTGCTGCTGCGGGAGGTCAGTTTTGCAAACGCTGCCGCTG
CCCGGCCAGGCCTCTCTTCCTTCACGATCGGCACTACCGGTACTTCAACT
TGTACTCCTTCTCGTGAGTTATATGATTTTTGTCCCTCCTGTTTGATGGT
CAAAGGGCCGTTGCCACTGCTACTGCTTGCCGTGGGGGCGCTGCTGCTGC
CCCCCCCCCGCGTAGTACGCCGGCGCAGTCCTGGCGCAGCCTCTACTCCG
CTTATCTCCTCCCTACAATGTTTTTTATTGTTGATGGTTGAGGCAATCGC
ATGCCCAGCGGCCTCGCTACTCTTTTCTACAATACTTTGCGGCGACTTCT
CCTCTTCTTGCGCGGTGATGGTGTGTTGTTGGTGGGCTGGCGACAGGGCC
GTGAAACCAGCCTGTTTGCTTCGCGTCCTATTTGCTGGCCGTGCCATGGC
CGTATCATCTTGCATCACTAGCTGCGACGAGTGTGCTATGCATGAGTTGT
GAGTCTTGGAAGATTGCAGGATTGAGTTTGCTAGTGGCTGCCACAGTGTG
GCGGGAGAAAAATCGGCGACCGTCGTGATGACGAG
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protein sequence of jgi.p|Nanoce1779_2|590939

>mRNA_4961-protein ID=mRNA_4961-protein|Name=jgi.p|Nanoce1779_2|590939|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MLVLLLREVSFANAAAARPGLSSFTIGTTGTSTCTPSRELYDFCPSCLMV
KGPLPLLLLAVGALLLPPPRVVRRRSPGAASTPLISSLQCFLLLMVEAIA
CPAASLLFSTILCGDFSSSCAVMVCCWWAGDRAVKPACLLRVLFAGRAMA
VSSCITSCDECAMHEL*
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mRNA from alignment at scaffold_12:131943..133277-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4961 ID=mRNA_4961|Name=jgi.p|Nanoce1779_2|590939|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp|location=Sequence derived from alignment at scaffold_12:131943..133277- (Nannochloropsis oceanica)
TGTTGTTGTTGTTGTCGTTGTTGTTGTTTTTGACGTTGTTTTCATTGTTG
TTGTTGCTGCTGTTGCTTGTGCTGCTGCTGCTAGCAGACCCGTCAATCGG
CACCACCAACACGATCTGTGAGACGGGATCAATCTTGCGAAAGGCGGATG
GAGCCTCTCTTGAAAACCGGAATGAGATGGAATAACGGCCGGGAGTCTTG
AACTGCGGGACTCGGAAGTAGAAAAGTCCGCCGACAGTAGACTGGCCTGC
CTCGTCGTACAGCACCTACAACGGAATGAGGAAGAAAGGGAAAGAGCGAG
AAGGGGGTGGGGATAATTCCGTGAGTCTAATAGATTGTGGTAATGGTGGC
TGTGGAATTGTAAAACAAATACCTCTTCCGTGTTGATCTCCTCTCCCTTA
CTGTCCAGTTTACTCGCGAGGGCAGCAATGCGATAGCGAAGCGGCACGTC
TTTATAAAGCTCGGGCAGGATCCTTTCGCCCTTGACGCTCATGAGGGCCA
AAGCAAAAAAATTGTCCCCACGGTGAGACCACCCAAAAGCCTTCGTTCGC
ACGTCAGGGTTTTTGATCCGAATGGTCGCGTTGAGCAAGGTGCCCTTTGA
ATGTCGATCCGCCACAAGTTCGAGACGCTTGGGTGCCTCCGACACATAGT
GACTTTTTTTGTATGTACTTTTTTTGGCATTTATGTCATAAGTGGCACTA
GATTGGCCGCCTGCCGAATTATTGCCACCGCCGGCATCTCCCGTATTTGC
GATGCTGGTACTGCTGCTGCGGGAGGTCAGTTTTGCAAACGCTGCCGCTG
CCCGGCCAGGCCTCTCTTCCTTCACGATCGGCACTACCGGTACTTCAACT
TGTACTCCTTCTCGTGAGTTATATGATTTTTGTCCCTCCTGTTTGATGGT
CAAAGGGCCGTTGCCACTGCTACTGCTTGCCGTGGGGGCGCTGCTGCTGC
CCCCCCCCCGCGTAGTACGCCGGCGCAGTCCTGGCGCAGCCTCTACTCCG
CTTATCTCCTCCCTACAATGTTTTTTATTGTTGATGGTTGAGGCAATCGC
ATGCCCAGCGGCCTCGCTACTCTTTTCTACAATACTTTGCGGCGACTTCT
CCTCTTCTTGCGCGGTGATGGTGTGTTGTTGGTGGGCTGGCGACAGGGCC
GTGAAACCAGCCTGTTTGCTTCGCGTCCTATTTGCTGGCCGTGCCATGGC
CGTATCATCTTGCATCACTAGCTGCGACGAGTGTGCTATGCATGAGTTGT
GAGTCTTGGAAGATTGCAGGATTGAGTTTGCTAGTGGCTGCCACAGTGTG
GCGGGAGAAAAATCGGCGACCGTCGTGATGACGAG
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Coding sequence (CDS) from alignment at scaffold_12:131943..133277-

>mRNA_4961 ID=mRNA_4961|Name=jgi.p|Nanoce1779_2|590939|organism=Nannochloropsis oceanica|type=CDS|length=501bp|location=Sequence derived from alignment at scaffold_12:131943..133277- (Nannochloropsis oceanica)
ATGCTGGTACTGCTGCTGCGGGAGGTCAGTTTTGCAAACGCTGCCGCTGC
CCGGCCAGGCCTCTCTTCCTTCACGATCGGCACTACCGGTACTTCAACTT
GTACTCCTTCTCGTGAGTTATATGATTTTTGTCCCTCCTGTTTGATGGTC
AAAGGGCCGTTGCCACTGCTACTGCTTGCCGTGGGGGCGCTGCTGCTGCC
CCCCCCCCGCGTAGTACGCCGGCGCAGTCCTGGCGCAGCCTCTACTCCGC
TTATCTCCTCCCTACAATGTTTTTTATTGTTGATGGTTGAGGCAATCGCA
TGCCCAGCGGCCTCGCTACTCTTTTCTACAATACTTTGCGGCGACTTCTC
CTCTTCTTGCGCGGTGATGGTGTGTTGTTGGTGGGCTGGCGACAGGGCCG
TGAAACCAGCCTGTTTGCTTCGCGTCCTATTTGCTGGCCGTGCCATGGCC
GTATCATCTTGCATCACTAGCTGCGACGAGTGTGCTATGCATGAGTTGTG
A
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Synonyms
Publications