jgi.p|Nanoce1779_2|590938, mRNA_4960 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590938
Unique Name	mRNA_4960
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2474
Alignment location	scaffold_12:129494..131967 -

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Properties


Property Name	Value
TranscriptId	591024
Track	FilteredModels2
ProteinId	590938

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:129494..131967 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590938	gene_4960	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590938	mRNA_4960-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4960	CDS_4960	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:129494..131967-
coding sequence from alignment at scaffold_12:129494..131967-

mRNA sequence

>mRNA_4960 ID=mRNA_4960|Name=jgi.p|Nanoce1779_2|590938|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp
AATCGGCGACCGTCGTGATGACGAGAGAGCGAGGCACATGAGAAAGTGTG
CATTCGTCAAGTAACCCACGCCCTCCTGGAAAACTCACGTTATTTTCAGG
CAACATTAGTAACGCCAGCCCGTTCTGCAACGGGGCGGAAACAAAAGAGC
CTGCCTGTCTGCCAGCATTTGCCATCTCTAAGTCTTTCTGCTGGGGATCA
AGCCCTCGGCAAAAACTCAAGTTTACGGAGACATTTTGGTAGACCAATGC
CTTACAAGCGCCTCAAAGCCTCTTACAGGCGCCTGAGGAATCTCATCCCA
CCTCTTCAAACACTTAGCCTCGCCGTCCTGTATTCTGACTGCCTCCGAGG
CCTTACCATACCATCCTATAGCGGGCTTCCTGAAGAGCGAGGGTGGCGGC
GAAGGTCGCAACACTTCAATCGGCTTGTGTGAGATATGCTAGGTATTTTT
CGACCCAATATCTATGCACACCAGAAAATCCATTGCTTTATTCTTGCTCG
ATGGTGGTGGTATATTTTCATGTCGAGATTTACGCATCCCGAACCTCCCC
CTACATGTACGCAGGTTTACAATGAGCAGCGCCTCTCCCAAACGAAGCAC
TAAAGACCTGAGTCGCGCGGTAGCTTTCCTGGCCCTGGAACGAGTTCAGC
AGTCCTCGGACGATACCAGAATGGCCTTTTTGATCGGGAAGGGGTTCACA
AAAGACGAAATTGTTGAGGCCACGCGCCAAGCGGAAAATGTGAGGCGATC
GACGAGTTCAACGTCTAATGATGGGCATCAGACCTTTGGTGGAGCTACAG
CACTAGCCGTGCCCCTCACGACTATTGGCCACGTCACAGAGCCAGGGGCC
AAATTCAGTACGCGTGTGATGCTCGGAGGTGGGAGCATCTCCTTCGTCTC
ACTCGCAAGCGGACCTGATGACGGCATTATCACTCCGCAAGCTCAGTTGA
ATACATTATTGGCACGTTTCAATACTTTGCTTGCATCCGCACCGTCACCA
CGAGACAAGGCAGACGTTGCTGTCATTTATCTATCTGTGAAAGGACTGGC
GAGGTGCGAGGAGGAGGTCCACAAAGCTTTGGATTGCTGGGTAGATGCCC
ATGCCCCACCCATGCGCTTCTTGGTTGAGCAAACGGGTAAACGAAATATG
GTTAATTTGATGGCAGTCGTAAGGGGATAGCATAAGAGGGGGGAACAGCA
GAACGTTTACAGGCCACATAAAAGGTTAGATAAATGAAGAAGCCAGTAGA
AGAGAGTAGAGACGATTGTTGATAATCAAGTGTTGGAGGAAGACAGTGAC
AAAGCTATTTAATCGGACGATATTTCGTCTCCTTTCCTTAACGGGGGATG
TTTAAGAGGGGAGGCATAATGGGAATACAACGCTTCACCCGGCAAATTTG
GATTGTCCTTCTTTGGCCTCTAAAAAAGCACGCACTTTCCGTTCGACTTC
CTACCCATTCTCCTCGCCTGATCAAATCCAATTTCTCTCCATACTTTGGG
GTCGAAGATTCCTCAGCCCGTGACAAAGTCCACTCAGTATACATCCCAGC
ATCTGTCTTTCCTCGTTCCTCGAGCGATCTTACCCTCTTGCGCCATACCC
TTTTTCCTTTCTCCCTCCTCCCCTGAATCTTTTCCTCTTCTCTATCTTGG
CCTTTATTCCTAAATCTGCGAGAATTTCTGAGGGAGGAGGGCGCACAACA
AAGACGGAAAATACACGATGTCCTTGTTGAAACTATTTCCTTTTCTTCGG
GAGGAGTGAGGTGCCCTGGGAATTCACTCTCAATCTGTATGAAGACAACA
TCAGAGGTTGCACAAGGTGGTGACTACTAGATAGCACAGGCTGTCTCATA
GGCCACGAAACAAATTCGAGTGGGCTTTTCTTGGCGTTGGCTTGTTAGTT
TCTTGCTGCTAGCGCCCTCTAGCGGGGGGGTACACGCGCGCCAGAGACAT
ATTACGAGTTCATATGTTGTATGTGAACAGAAGTCCGCATTCGAGGGGCC
AGGGGCATACAGGCATATATATACCCTCAGCTTGGTCCCAGCGTAAGGAA
ATATGCGCATTTTGAATTCTTTTTCGATGGCTACATGGAAATACCACACA
ATACACCAATACACGCAATAAATCAAGCTGGAGGTTGAAGCGCTAACACC
GTCTTCTTCCTATCTCATAAGCCACAATCGTATCCGGGAAGATGAAGATC
ACCCTGTGCCCTTCCCGGCAGCTCATCCTCGACGGATAACTCACACACTT
TCACATGTATACATTTCTTAGGTGGGACACGCTGGCCTGGCTTTTCCTTA
TGAAGGCGCATACATCCTTGCTGGCCACAGAGATTAGATTCTTTCTTTCC
CCTTACTTGCCTCCCGGAGACGGCATGAATTGATGTTTACCGCGACTACC
GAACAAGAGCTTTTTCATCGTACCATTATTAGCAGTCTCAGGAGTAAAGA
AGAATGTCGGCGTCCTCGGGTGCG

protein sequence of jgi.p|Nanoce1779_2|590938

>mRNA_4960-protein ID=mRNA_4960-protein|Name=jgi.p|Nanoce1779_2|590938|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MHTRKSIALFLLDGGGIFSCRDLRIPNLPLHVRRFTMSSASPKRSTKDLS
RAVAFLALERVQQSSDDTRMAFLIGKGFTKDEIVEATRQAENVRRSTSST
SNDGHQTFGGATALAVPLTTIGHVTEPGAKFSTRVMLGGGSISFVSLASG
PDDGIITPQAQLNTLLARFNTLLASAPSPRDKADVAVIYLSVKGLARCEE
EVHKALDCWVDAHAPPMRFLVEQTGKRNMVNLMAVVRG*

mRNA from alignment at scaffold_12:129494..131967-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4960 ID=mRNA_4960|Name=jgi.p|Nanoce1779_2|590938|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp|location=Sequence derived from alignment at scaffold_12:129494..131967- (Nannochloropsis oceanica)
AATCGGCGACCGTCGTGATGACGAGAGAGCGAGGCACATGAGAAAGTGTG
CATTCGTCAAGTAACCCACGCCCTCCTGGAAAACTCACGTTATTTTCAGG
CAACATTAGTAACGCCAGCCCGTTCTGCAACGGGGCGGAAACAAAAGAGC
CTGCCTGTCTGCCAGCATTTGCCATCTCTAAGTCTTTCTGCTGGGGATCA
AGCCCTCGGCAAAAACTCAAGTTTACGGAGACATTTTGGTAGACCAATGC
CTTACAAGCGCCTCAAAGCCTCTTACAGGCGCCTGAGGAATCTCATCCCA
CCTCTTCAAACACTTAGCCTCGCCGTCCTGTATTCTGACTGCCTCCGAGG
CCTTACCATACCATCCTATAGCGGGCTTCCTGAAGAGCGAGGGTGGCGGC
GAAGGTCGCAACACTTCAATCGGCTTGTGTGAGATATGCTAGGTATTTTT
CGACCCAATATCTATGCACACCAGAAAATCCATTGCTTTATTCTTGCTCG
ATGGTGGTGGTATATTTTCATGTCGAGATTTACGCATCCCGAACCTCCCC
CTACATGTACGCAGGTTTACAATGAGCAGCGCCTCTCCCAAACGAAGCAC
TAAAGACCTGAGTCGCGCGGTAGCTTTCCTGGCCCTGGAACGAGTTCAGC
AGTCCTCGGACGATACCAGAATGGCCTTTTTGATCGGGAAGGGGTTCACA
AAAGACGAAATTGTTGAGGCCACGCGCCAAGCGGAAAATGTGAGGCGATC
GACGAGTTCAACGTCTAATGATGGGCATCAGACCTTTGGTGGAGCTACAG
CACTAGCCGTGCCCCTCACGACTATTGGCCACGTCACAGAGCCAGGGGCC
AAATTCAGTACGCGTGTGATGCTCGGAGGTGGGAGCATCTCCTTCGTCTC
ACTCGCAAGCGGACCTGATGACGGCATTATCACTCCGCAAGCTCAGTTGA
ATACATTATTGGCACGTTTCAATACTTTGCTTGCATCCGCACCGTCACCA
CGAGACAAGGCAGACGTTGCTGTCATTTATCTATCTGTGAAAGGACTGGC
GAGGTGCGAGGAGGAGGTCCACAAAGCTTTGGATTGCTGGGTAGATGCCC
ATGCCCCACCCATGCGCTTCTTGGTTGAGCAAACGGGTAAACGAAATATG
GTTAATTTGATGGCAGTCGTAAGGGGATAGCATAAGAGGGGGGAACAGCA
GAACGTTTACAGGCCACATAAAAGGTTAGATAAATGAAGAAGCCAGTAGA
AGAGAGTAGAGACGATTGTTGATAATCAAGTGTTGGAGGAAGACAGTGAC
AAAGCTATTTAATCGGACGATATTTCGTCTCCTTTCCTTAACGGGGGATG
TTTAAGAGGGGAGGCATAATGGGAATACAACGCTTCACCCGGCAAATTTG
GATTGTCCTTCTTTGGCCTCTAAAAAAGCACGCACTTTCCGTTCGACTTC
CTACCCATTCTCCTCGCCTGATCAAATCCAATTTCTCTCCATACTTTGGG
GTCGAAGATTCCTCAGCCCGTGACAAAGTCCACTCAGTATACATCCCAGC
ATCTGTCTTTCCTCGTTCCTCGAGCGATCTTACCCTCTTGCGCCATACCC
TTTTTCCTTTCTCCCTCCTCCCCTGAATCTTTTCCTCTTCTCTATCTTGG
CCTTTATTCCTAAATCTGCGAGAATTTCTGAGGGAGGAGGGCGCACAACA
AAGACGGAAAATACACGATGTCCTTGTTGAAACTATTTCCTTTTCTTCGG
GAGGAGTGAGGTGCCCTGGGAATTCACTCTCAATCTGTATGAAGACAACA
TCAGAGGTTGCACAAGGTGGTGACTACTAGATAGCACAGGCTGTCTCATA
GGCCACGAAACAAATTCGAGTGGGCTTTTCTTGGCGTTGGCTTGTTAGTT
TCTTGCTGCTAGCGCCCTCTAGCGGGGGGGTACACGCGCGCCAGAGACAT
ATTACGAGTTCATATGTTGTATGTGAACAGAAGTCCGCATTCGAGGGGCC
AGGGGCATACAGGCATATATATACCCTCAGCTTGGTCCCAGCGTAAGGAA
ATATGCGCATTTTGAATTCTTTTTCGATGGCTACATGGAAATACCACACA
ATACACCAATACACGCAATAAATCAAGCTGGAGGTTGAAGCGCTAACACC
GTCTTCTTCCTATCTCATAAGCCACAATCGTATCCGGGAAGATGAAGATC
ACCCTGTGCCCTTCCCGGCAGCTCATCCTCGACGGATAACTCACACACTT
TCACATGTATACATTTCTTAGGTGGGACACGCTGGCCTGGCTTTTCCTTA
TGAAGGCGCATACATCCTTGCTGGCCACAGAGATTAGATTCTTTCTTTCC
CCTTACTTGCCTCCCGGAGACGGCATGAATTGATGTTTACCGCGACTACC
GAACAAGAGCTTTTTCATCGTACCATTATTAGCAGTCTCAGGAGTAAAGA
AGAATGTCGGCGTCCTCGGGTGCG

Coding sequence (CDS) from alignment at scaffold_12:129494..131967-

>mRNA_4960 ID=mRNA_4960|Name=jgi.p|Nanoce1779_2|590938|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at scaffold_12:129494..131967- (Nannochloropsis oceanica)
ATGCACACCAGAAAATCCATTGCTTTATTCTTGCTCGATGGTGGTGGTAT
ATTTTCATGTCGAGATTTACGCATCCCGAACCTCCCCCTACATGTACGCA
GGTTTACAATGAGCAGCGCCTCTCCCAAACGAAGCACTAAAGACCTGAGT
CGCGCGGTAGCTTTCCTGGCCCTGGAACGAGTTCAGCAGTCCTCGGACGA
TACCAGAATGGCCTTTTTGATCGGGAAGGGGTTCACAAAAGACGAAATTG
TTGAGGCCACGCGCCAAGCGGAAAATGTGAGGCGATCGACGAGTTCAACG
TCTAATGATGGGCATCAGACCTTTGGTGGAGCTACAGCACTAGCCGTGCC
CCTCACGACTATTGGCCACGTCACAGAGCCAGGGGCCAAATTCAGTACGC
GTGTGATGCTCGGAGGTGGGAGCATCTCCTTCGTCTCACTCGCAAGCGGA
CCTGATGACGGCATTATCACTCCGCAAGCTCAGTTGAATACATTATTGGC
ACGTTTCAATACTTTGCTTGCATCCGCACCGTCACCACGAGACAAGGCAG
ACGTTGCTGTCATTTATCTATCTGTGAAAGGACTGGCGAGGTGCGAGGAG
GAGGTCCACAAAGCTTTGGATTGCTGGGTAGATGCCCATGCCCCACCCAT
GCGCTTCTTGGTTGAGCAAACGGGTAAACGAAATATGGTTAATTTGATGG
CAGTCGTAAGGGGATAG

Synonyms

Publications